Wall clock time and date at job start Sun Mar 29 2020 23:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00146 * 2 1 4 4 O 1.20822 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47174 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46945 * 299.99743 * 6 5 3 8 8 N 1.46500 * 109.46947 * 180.02562 * 6 5 3 9 9 C 1.34779 * 119.99665 * 294.85329 * 8 6 5 10 10 O 1.21684 * 120.00146 * 4.97119 * 9 8 6 11 11 C 1.46377 * 119.99330 * 184.96860 * 9 8 6 12 12 H 1.07995 * 120.00372 * 0.02562 * 11 9 8 13 13 C 1.40051 * 119.99516 * 180.02562 * 11 9 8 14 14 N 1.30673 * 120.00170 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99919 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47283 * 89.99923 * 15 13 11 17 17 H 1.48503 * 109.47245 * 209.99822 * 15 13 11 18 18 H 1.48496 * 109.47042 * 329.99783 * 15 13 11 19 19 C 1.52997 * 109.47129 * 59.99910 * 6 5 3 20 20 C 1.53001 * 117.49702 * 248.95665 * 19 6 5 21 21 C 1.52992 * 117.49853 * 180.29648 * 19 6 5 22 22 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47176 * 300.00472 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00233 * 1 2 3 25 25 H 1.08999 * 109.47044 * 59.99905 * 5 3 2 26 26 H 1.08995 * 109.47069 * 299.99481 * 5 3 2 27 27 H 1.08999 * 109.47707 * 299.99962 * 7 6 5 28 28 H 1.08996 * 109.47053 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46932 * 60.00070 * 7 6 5 30 30 H 0.96998 * 119.99932 * 114.85640 * 8 6 5 31 31 H 0.97003 * 120.00095 * 180.02562 * 14 13 11 32 32 H 1.09001 * 115.54788 * 34.62034 * 19 6 5 33 33 H 1.09001 * 117.50075 * 359.97438 * 20 19 6 34 34 H 1.09004 * 117.49611 * 145.02306 * 20 19 6 35 35 H 1.09004 * 117.50091 * 214.98147 * 21 19 6 36 36 H 1.08998 * 117.50246 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 3.4537 3.4347 -1.2502 8 7 5.4632 2.8186 -0.0002 9 6 6.1618 2.3644 1.0591 10 8 5.5850 1.8091 1.9755 11 6 7.6142 2.5393 1.1073 12 1 8.1260 3.0325 0.2942 13 6 8.3402 2.0669 2.2078 14 7 7.7210 1.4697 3.1914 15 14 10.1938 2.2907 2.2697 16 1 10.5147 3.5827 2.9275 17 1 10.8012 1.1775 3.0425 18 1 10.7388 2.2895 0.8884 19 6 3.4526 3.4364 1.2483 20 6 2.3564 4.4851 1.0499 21 6 3.7739 4.9213 1.4290 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.9564 0.7805 -0.8891 26 1 3.9557 0.7809 0.8908 27 1 3.8438 2.9401 -2.1397 28 1 3.7624 4.4801 -1.2505 29 1 2.3652 3.3777 -1.2506 30 1 5.9290 3.1962 -0.7626 31 1 8.2238 1.1428 3.9539 32 1 3.4025 2.8194 2.1455 33 1 2.0256 4.6807 0.0299 34 1 1.5853 4.5584 1.8169 35 1 3.9348 5.2814 2.4452 36 1 4.3756 5.4034 0.6587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871237032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:22 Heat of formation + Delta-G solvation = -93.444357 kcal Electronic energy + Delta-G solvation = -20002.436573 eV Core-core repulsion = 16874.073888 eV Total energy + Delta-G solvation = -3128.362685 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44646 -38.62479 -36.39128 -35.75179 -33.41132 -32.32934 -30.48657 -28.40862 -26.79683 -26.11989 -23.19943 -21.69636 -20.82634 -20.26554 -17.95845 -17.33855 -17.07790 -16.29758 -16.21829 -15.35735 -15.05036 -14.40071 -14.29248 -13.72493 -13.29943 -12.96316 -12.55460 -12.29113 -12.06172 -11.92181 -11.71777 -11.61110 -11.13582 -11.06527 -10.90146 -10.68343 -10.52695 -10.46119 -10.25599 -10.14398 -9.94216 -9.46088 -9.31075 -8.83757 -7.53728 -7.49466 -6.16633 -4.62432 2.60222 3.02408 3.14590 3.21967 3.24710 4.10740 4.45905 4.61653 4.98757 5.16473 5.18378 5.22727 5.26833 5.35123 5.53512 5.64579 5.76033 5.84354 5.88473 5.95117 6.01642 6.24409 6.28477 6.39581 6.46952 6.66627 6.68531 6.78023 6.79841 7.08221 7.44550 7.92886 8.09389 8.16343 8.34806 9.04379 9.56390 10.61308 10.80762 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.006228 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.763357 B = 4494.662882 C = 4920.775078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.498 6.498 5 C -0.122 4.122 6 C 0.232 3.768 7 C -0.169 4.169 8 N -0.756 5.756 9 C 0.560 3.440 10 O -0.573 6.573 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.090 3.910 14 N -0.767 5.767 15 Si 0.904 3.096 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.125 4.125 20 C -0.166 4.166 21 C -0.174 4.174 22 H 0.094 0.906 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.129 0.871 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.381 0.619 31 H 0.267 0.733 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 0.655 -7.326 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.161 4.161 6 C 0.144 3.856 7 C -0.226 4.226 8 N -0.410 5.410 9 C 0.365 3.635 10 O -0.456 6.456 11 C -0.582 4.582 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.396 5.396 15 Si 0.729 3.271 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.144 4.144 20 C -0.203 4.203 21 C -0.212 4.212 22 H 0.113 0.887 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.147 0.853 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.213 0.787 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.077 0.456 -6.456 11.976 hybrid contribution 1.047 0.286 -0.226 1.109 sum -9.030 0.742 -6.682 11.258 Atomic orbital electron populations 1.23152 0.77388 1.03054 1.02173 1.86559 1.22672 1.34437 1.84517 1.24047 0.92458 0.80905 0.71755 1.90580 1.67303 1.35591 1.45096 1.22023 0.86029 1.01143 1.06919 1.18978 0.83097 0.90249 0.93259 1.22435 1.03459 1.00473 0.96204 1.46326 1.02963 1.69332 1.22418 1.18117 0.87708 0.77740 0.79974 1.90545 1.71141 1.46284 1.37628 1.20889 0.90859 1.40568 1.05906 0.91621 1.25662 0.99582 0.93035 0.94715 1.70009 1.36284 1.27540 1.05739 0.86430 0.83369 0.78349 0.78941 1.19837 1.20536 1.18983 1.22352 1.01228 0.91348 0.99503 1.22942 0.91208 1.04360 1.01832 1.22781 0.98365 0.98383 1.01636 0.88716 0.92141 0.92301 0.88607 0.85271 0.93138 0.92308 0.89252 0.78685 0.92210 0.87814 0.88728 0.90426 0.89960 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.61 10.56 -39.24 -0.41 -6.03 16 3 C 0.46 7.88 7.39 36.01 0.27 8.14 16 4 O -0.50 -8.64 10.79 -18.75 -0.20 -8.85 16 5 C -0.12 -2.26 4.86 -27.88 -0.14 -2.39 16 6 C 0.23 4.37 0.62 -131.82 -0.08 4.29 16 7 C -0.17 -2.61 6.92 37.16 0.26 -2.35 16 8 N -0.76 -16.06 4.98 -49.00 -0.24 -16.30 16 9 C 0.56 14.98 7.16 -12.99 -0.09 14.89 16 10 O -0.57 -17.06 11.88 5.20 0.06 -17.00 16 11 C -0.55 -14.92 9.54 -35.63 -0.34 -15.26 16 12 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 13 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 14 N -0.77 -22.41 11.83 55.55 0.66 -21.75 16 15 Si 0.90 19.90 29.56 -169.99 -5.02 14.87 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.13 -2.52 3.03 -90.63 -0.27 -2.79 16 20 C -0.17 -2.85 7.88 -26.69 -0.21 -3.06 16 21 C -0.17 -3.26 9.78 -26.70 -0.26 -3.52 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 24 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 25 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 26 H 0.13 2.84 6.38 -51.93 -0.33 2.51 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.87 7.07 -51.93 -0.37 0.50 16 29 H 0.09 1.40 4.50 -51.93 -0.23 1.16 16 30 H 0.38 7.24 8.46 -40.82 -0.35 6.90 16 31 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 32 H 0.10 2.44 7.41 -51.93 -0.38 2.06 16 33 H 0.09 1.53 5.77 -51.93 -0.30 1.23 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.56 7.59 -51.93 -0.39 1.17 16 LS Contribution 294.43 15.07 4.44 4.44 Total: -1.00 -31.94 294.43 -5.49 -37.43 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.86 Total: 11.42 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 0.10 Total: 1.77 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.41 Total: -38.06 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.56 Total: -31.87 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.94 -5.49 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871237032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.011 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds