Wall clock time and date at job start Sun Mar 29 2020 23:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00146 * 2 1 4 4 O 1.20822 * 119.99926 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47174 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.46945 * 299.99743 * 6 5 3 8 8 N 1.46500 * 109.46947 * 180.02562 * 6 5 3 9 9 C 1.34779 * 119.99665 * 294.85329 * 8 6 5 10 10 O 1.21684 * 120.00146 * 4.97119 * 9 8 6 11 11 C 1.46377 * 119.99330 * 184.96860 * 9 8 6 12 12 H 1.07995 * 120.00372 * 0.02562 * 11 9 8 13 13 C 1.40051 * 119.99516 * 180.02562 * 11 9 8 14 14 N 1.30673 * 120.00170 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99919 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47283 * 89.99923 * 15 13 11 17 17 H 1.48503 * 109.47245 * 209.99822 * 15 13 11 18 18 H 1.48496 * 109.47042 * 329.99783 * 15 13 11 19 19 C 1.52997 * 109.47129 * 59.99910 * 6 5 3 20 20 C 1.53001 * 117.49702 * 248.95665 * 19 6 5 21 21 C 1.52992 * 117.49853 * 180.29648 * 19 6 5 22 22 H 1.08996 * 109.47240 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47176 * 300.00472 * 1 2 3 24 24 H 1.09000 * 109.47118 * 60.00233 * 1 2 3 25 25 H 1.08999 * 109.47044 * 59.99905 * 5 3 2 26 26 H 1.08995 * 109.47069 * 299.99481 * 5 3 2 27 27 H 1.08999 * 109.47707 * 299.99962 * 7 6 5 28 28 H 1.08996 * 109.47053 * 179.97438 * 7 6 5 29 29 H 1.08999 * 109.46932 * 60.00070 * 7 6 5 30 30 H 0.96998 * 119.99932 * 114.85640 * 8 6 5 31 31 H 0.97003 * 120.00095 * 180.02562 * 14 13 11 32 32 H 1.09001 * 115.54788 * 34.62034 * 19 6 5 33 33 H 1.09001 * 117.50075 * 359.97438 * 20 19 6 34 34 H 1.09004 * 117.49611 * 145.02306 * 20 19 6 35 35 H 1.09004 * 117.50091 * 214.98147 * 21 19 6 36 36 H 1.08998 * 117.50246 * 359.97438 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 3.4537 3.4347 -1.2502 8 7 5.4632 2.8186 -0.0002 9 6 6.1618 2.3644 1.0591 10 8 5.5850 1.8091 1.9755 11 6 7.6142 2.5393 1.1073 12 1 8.1260 3.0325 0.2942 13 6 8.3402 2.0669 2.2078 14 7 7.7210 1.4697 3.1914 15 14 10.1938 2.2907 2.2697 16 1 10.5147 3.5827 2.9275 17 1 10.8012 1.1775 3.0425 18 1 10.7388 2.2895 0.8884 19 6 3.4526 3.4364 1.2483 20 6 2.3564 4.4851 1.0499 21 6 3.7739 4.9213 1.4290 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.9564 0.7805 -0.8891 26 1 3.9557 0.7809 0.8908 27 1 3.8438 2.9401 -2.1397 28 1 3.7624 4.4801 -1.2505 29 1 2.3652 3.3777 -1.2506 30 1 5.9290 3.1962 -0.7626 31 1 8.2238 1.1428 3.9539 32 1 3.4025 2.8194 2.1455 33 1 2.0256 4.6807 0.0299 34 1 1.5853 4.5584 1.8169 35 1 3.9348 5.2814 2.4452 36 1 4.3756 5.4034 0.6587 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871237032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:21 Heat of formation + Delta-G solvation = -115.144369 kcal Electronic energy + Delta-G solvation = -20003.377556 eV Core-core repulsion = 16874.073888 eV Total energy + Delta-G solvation = -3129.303668 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.81642 -40.17178 -38.13638 -37.15646 -35.12225 -34.36758 -32.16841 -29.69391 -28.17567 -27.85722 -24.70410 -23.18356 -22.32615 -21.98297 -19.58822 -19.13814 -18.55079 -17.64416 -17.50129 -17.30491 -16.47595 -16.02978 -15.90136 -15.28374 -14.69323 -14.45357 -14.22254 -13.97721 -13.56575 -13.30196 -13.05284 -12.88863 -12.86247 -12.75331 -12.53310 -12.38656 -12.03959 -11.99387 -11.74977 -11.70033 -11.31350 -10.99007 -10.86463 -10.82052 -9.57182 -9.38763 -8.20496 -6.76254 1.25066 1.42191 1.42773 1.57155 1.80797 2.27935 2.56245 2.93121 3.43059 3.67889 3.68331 3.91260 4.07791 4.19042 4.25670 4.34633 4.36949 4.41651 4.51670 4.64571 4.71936 4.81468 4.86825 4.98910 5.07456 5.20065 5.26553 5.33126 5.38429 5.49504 5.52708 5.97493 6.32780 6.39310 6.83333 6.95663 7.68673 8.60142 8.78967 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.006228 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.763357 B = 4494.662882 C = 4920.775078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.375 6.375 3 C 0.472 3.528 4 O -0.502 6.502 5 C -0.121 4.121 6 C 0.230 3.770 7 C -0.157 4.157 8 N -0.744 5.744 9 C 0.550 3.450 10 O -0.612 6.612 11 C -0.575 4.575 12 H 0.082 0.918 13 C 0.034 3.966 14 N -0.820 5.820 15 Si 0.988 3.012 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.250 1.250 19 C -0.149 4.149 20 C -0.132 4.132 21 C -0.179 4.179 22 H 0.126 0.874 23 H 0.057 0.943 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.394 0.606 31 H 0.271 0.729 32 H 0.057 0.943 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.530 1.482 -9.347 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.291 6.291 3 C 0.315 3.685 4 O -0.391 6.391 5 C -0.160 4.160 6 C 0.142 3.858 7 C -0.214 4.214 8 N -0.398 5.398 9 C 0.354 3.646 10 O -0.498 6.498 11 C -0.611 4.611 12 H 0.100 0.900 13 C -0.181 4.181 14 N -0.450 5.450 15 Si 0.809 3.191 16 H -0.191 1.191 17 H -0.201 1.201 18 H -0.173 1.173 19 C -0.169 4.169 20 C -0.169 4.169 21 C -0.216 4.216 22 H 0.145 0.855 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.187 1.296 -8.526 13.347 hybrid contribution 0.944 -0.014 0.408 1.029 sum -9.243 1.282 -8.118 12.368 Atomic orbital electron populations 1.23519 0.74768 1.05427 1.02659 1.86523 1.25194 1.33358 1.84075 1.23541 0.91724 0.81399 0.71794 1.90551 1.67254 1.35807 1.45470 1.21834 0.87779 1.00811 1.05595 1.19156 0.81361 0.90769 0.94470 1.22346 1.03490 1.00826 0.94780 1.45991 1.04294 1.68095 1.21370 1.18338 0.88187 0.77503 0.80594 1.90529 1.71973 1.47820 1.39472 1.21434 0.91755 1.41117 1.06843 0.89971 1.26802 1.05417 0.92011 0.93871 1.70177 1.38887 1.29153 1.06797 0.85152 0.75926 0.78388 0.79648 1.19105 1.20099 1.17323 1.22217 1.04399 0.91634 0.98601 1.22956 0.90211 1.00753 1.03005 1.22823 1.00044 0.97202 1.01535 0.85535 0.92397 0.91057 0.87066 0.89503 0.91057 0.91198 0.88810 0.77171 0.91928 0.92493 0.86669 0.89909 0.91012 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.37 -11.20 10.56 -51.36 -0.54 -11.74 16 3 C 0.47 15.76 7.39 71.24 0.53 16.29 16 4 O -0.50 -16.72 10.79 21.98 0.24 -16.48 16 5 C -0.12 -4.54 4.86 29.85 0.15 -4.40 16 6 C 0.23 8.56 0.62 3.60 0.00 8.56 16 7 C -0.16 -4.44 6.92 71.98 0.50 -3.94 16 8 N -0.74 -31.58 4.98 -427.15 -2.13 -33.71 16 9 C 0.55 30.24 7.16 86.36 0.62 30.85 16 10 O -0.61 -38.36 11.88 -4.30 -0.05 -38.42 16 11 C -0.57 -31.75 9.54 24.83 0.24 -31.51 16 12 H 0.08 4.10 7.85 -2.91 -0.02 4.08 16 13 C 0.03 1.87 5.50 85.30 0.47 2.34 16 14 N -0.82 -49.57 11.83 21.84 0.26 -49.31 16 15 Si 0.99 40.88 29.56 68.60 2.03 42.91 16 16 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 17 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 19 C -0.15 -6.09 3.03 -10.80 -0.03 -6.13 16 20 C -0.13 -4.35 7.88 30.62 0.24 -4.11 16 21 C -0.18 -6.63 9.78 30.62 0.30 -6.33 16 22 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 24 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 25 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 26 H 0.09 4.07 6.38 -2.39 -0.02 4.05 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.83 7.07 -2.39 -0.02 1.81 16 29 H 0.09 2.63 4.50 -2.39 -0.01 2.62 16 30 H 0.39 14.50 8.46 -92.71 -0.78 13.72 16 31 H 0.27 14.99 8.29 -92.71 -0.77 14.22 16 32 H 0.06 2.86 7.41 -2.39 -0.02 2.84 16 33 H 0.12 3.35 5.77 -2.39 -0.01 3.34 16 34 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 36 H 0.10 3.37 7.59 -2.39 -0.02 3.35 16 Total: -1.00 -71.86 294.43 4.32 -67.54 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: 0.32 Total: 35.79 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.20 Total: 3.42 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -1.87 Total: -83.02 kcal Atomic # 8 Polarization: -66.28 SS G_CDS: -0.36 Total: -66.64 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -71.86 4.32 -67.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871237032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.606 kcal (2) G-P(sol) polarization free energy of solvation -71.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds