Wall clock time and date at job start Sun Mar 29 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00212 * 179.97438 * 14 12 11 16 16 H 1.08995 * 112.84862 * 23.79950 * 15 14 12 17 17 C 1.53775 * 113.61561 * 155.00137 * 15 14 12 18 18 C 1.53778 * 87.08470 * 89.11278 * 17 15 14 19 19 H 1.08993 * 113.61864 * 270.88426 * 18 17 15 20 20 C 1.50706 * 113.61284 * 139.97836 * 18 17 15 21 21 O 1.20820 * 120.00241 * 0.02562 * 20 18 17 22 22 O 1.34234 * 119.99559 * 180.02562 * 20 18 17 23 23 C 1.53786 * 113.61159 * 252.49885 * 15 14 12 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 0.97005 * 120.00065 * 359.97438 * 14 12 11 32 32 H 1.09000 * 113.61384 * 203.66400 * 17 15 14 33 33 H 1.09005 * 113.61704 * 334.56448 * 17 15 14 34 34 H 0.96702 * 116.99375 * 180.02562 * 22 20 18 35 35 H 1.08996 * 113.61408 * 25.42628 * 23 15 14 36 36 H 1.08997 * 113.61291 * 156.33923 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 7.8672 -5.6849 0.0328 16 1 7.1434 -6.3911 -0.3741 17 6 9.2789 -5.8412 -0.5566 18 6 9.8141 -5.5908 0.8631 19 1 9.9830 -4.5375 1.0866 20 6 10.9870 -6.4635 1.2288 21 8 11.4161 -7.2639 0.4319 22 8 11.5551 -6.3516 2.4398 23 6 8.4665 -6.1217 1.3800 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.0092 -3.5664 0.0291 32 1 9.4871 -6.8434 -0.9312 33 1 9.5443 -5.0588 -1.2676 34 1 12.3049 -6.9323 2.6283 35 1 8.0761 -5.5657 2.2323 36 1 8.4527 -7.2006 1.5347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902659227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:15 Heat of formation + Delta-G solvation = -126.494295 kcal Electronic energy + Delta-G solvation = -18099.449028 eV Core-core repulsion = 14969.653190 eV Total energy + Delta-G solvation = -3129.795838 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.21931 -39.81542 -38.17270 -36.45629 -34.31160 -33.31734 -32.03221 -28.67077 -27.08401 -26.20730 -23.93553 -22.23471 -20.86710 -19.89682 -19.57837 -18.57153 -17.53625 -16.83454 -16.44212 -16.19938 -15.94774 -15.50196 -14.70065 -14.25394 -14.03485 -13.67418 -13.40764 -12.96443 -12.73421 -12.67126 -12.29105 -11.96467 -11.94254 -11.64628 -11.16843 -11.11856 -10.98906 -10.79102 -10.72626 -10.02561 -9.86297 -9.70670 -9.46233 -9.17766 -9.13389 -8.51037 -6.00655 -3.98492 1.75477 2.62347 2.76913 3.06875 3.31452 3.38612 3.41175 3.88213 3.98597 4.38649 4.46997 4.50081 4.88963 4.97224 5.17087 5.27402 5.32602 5.41918 5.48846 5.52466 5.53596 5.57590 5.72016 6.06963 6.09477 6.39908 6.55252 6.68217 6.91670 7.36770 7.45131 7.46032 7.47534 7.82686 8.32665 8.59271 9.06207 9.61315 11.13083 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.050915 B = 0.003084 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.805142 B = 9075.896462 C = 9323.136777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.516 3.484 13 O -0.530 6.530 14 N -0.724 5.724 15 C 0.123 3.877 16 H 0.112 0.888 17 C -0.126 4.126 18 C -0.113 4.113 19 H 0.125 0.875 20 C 0.489 3.511 21 O -0.515 6.515 22 O -0.515 6.515 23 C -0.133 4.133 24 H 0.262 0.738 25 H 0.011 0.989 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.409 0.591 35 H 0.087 0.913 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.880 -9.778 2.674 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.126 4.126 11 C -0.181 4.181 12 C 0.304 3.696 13 O -0.405 6.405 14 N -0.377 5.377 15 C 0.017 3.983 16 H 0.130 0.870 17 C -0.164 4.164 18 C -0.132 4.132 19 H 0.143 0.857 20 C 0.332 3.668 21 O -0.403 6.403 22 O -0.327 6.327 23 C -0.172 4.172 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.268 0.732 35 H 0.106 0.894 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 23.895 -10.289 2.366 26.124 hybrid contribution 1.377 0.926 0.210 1.673 sum 25.272 -9.363 2.575 27.074 Atomic orbital electron populations 1.69924 1.06320 1.26798 1.51328 1.25061 0.94746 0.99168 0.94706 0.86754 0.80300 0.83631 0.78404 1.20354 1.21470 1.19046 1.21171 0.89547 0.94548 1.50454 0.90932 1.19606 0.97320 0.92156 0.96098 1.21273 0.89164 0.99578 1.02588 1.21882 1.00766 0.91681 1.03801 1.21230 0.81266 0.92722 0.74385 1.90702 1.55081 1.46731 1.48005 1.45850 1.07727 1.07018 1.77140 1.21702 0.95485 0.85509 0.95593 0.87010 1.23368 0.94048 1.04847 0.94109 1.22644 0.90688 1.00169 0.99716 0.85690 1.23386 0.82977 0.81790 0.78684 1.90721 1.62394 1.36458 1.50758 1.84573 1.48860 1.63348 1.35904 1.23417 0.91989 1.02324 0.99507 0.92789 0.97093 0.96666 0.92052 0.92056 0.89256 0.89255 0.76565 0.87266 0.89642 0.73237 0.89404 0.88621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.09 -1.78 4.44 -26.74 -0.12 -1.89 16 11 C -0.14 -2.05 5.70 -27.88 -0.16 -2.21 16 12 C 0.52 7.35 7.83 -10.98 -0.09 7.26 16 13 O -0.53 -9.88 15.58 5.56 0.09 -9.80 16 14 N -0.72 -7.00 5.26 -53.02 -0.28 -7.28 16 15 C 0.12 1.10 4.32 -67.12 -0.29 0.81 16 16 H 0.11 1.22 7.46 -51.93 -0.39 0.83 16 17 C -0.13 -0.89 7.15 -25.92 -0.19 -1.07 16 18 C -0.11 -0.75 4.14 -90.96 -0.38 -1.13 16 19 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 20 C 0.49 3.95 7.85 36.01 0.28 4.23 16 21 O -0.52 -5.68 16.66 -18.74 -0.31 -5.99 16 22 O -0.52 -3.20 13.42 -39.27 -0.53 -3.72 16 23 C -0.13 -1.03 7.43 -25.91 -0.19 -1.22 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.01 0.25 7.58 -51.93 -0.39 -0.15 16 26 H 0.02 0.35 7.19 -51.93 -0.37 -0.02 16 27 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 28 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.40 2.64 8.70 -40.82 -0.36 2.28 16 32 H 0.11 0.85 7.44 -51.93 -0.39 0.46 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 0.89 9.10 45.56 0.41 1.31 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -36.32 309.91 -6.37 -42.69 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.44 Total: -0.70 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.67 Total: -9.28 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.49 Total: -34.80 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.75 Total: -19.51 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.32 -6.37 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902659227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.807 kcal (2) G-P(sol) polarization free energy of solvation -36.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds