Wall clock time and date at job start Sun Mar 29 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.47080 * 180.02562 * 11 10 9 13 13 O 1.21277 * 119.99772 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00117 * 179.97438 * 12 11 10 15 15 C 1.46499 * 120.00212 * 179.97438 * 14 12 11 16 16 H 1.08995 * 112.84862 * 23.79950 * 15 14 12 17 17 C 1.53775 * 113.61561 * 155.00137 * 15 14 12 18 18 C 1.53778 * 87.08470 * 89.11278 * 17 15 14 19 19 H 1.08993 * 113.61864 * 270.88426 * 18 17 15 20 20 C 1.50706 * 113.61284 * 139.97836 * 18 17 15 21 21 O 1.20820 * 120.00241 * 0.02562 * 20 18 17 22 22 O 1.34234 * 119.99559 * 180.02562 * 20 18 17 23 23 C 1.53786 * 113.61159 * 252.49885 * 15 14 12 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 30 30 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 31 31 H 0.97005 * 120.00065 * 359.97438 * 14 12 11 32 32 H 1.09000 * 113.61384 * 203.66400 * 17 15 14 33 33 H 1.09005 * 113.61704 * 334.56448 * 17 15 14 34 34 H 0.96702 * 116.99375 * 180.02562 * 22 20 18 35 35 H 1.08996 * 113.61408 * 25.42628 * 23 15 14 36 36 H 1.08997 * 113.61291 * 156.33923 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 6 5.5515 -2.6366 0.0178 12 6 6.0538 -4.0574 0.0221 13 8 5.2657 -4.9792 0.0202 14 7 7.3788 -4.3037 0.0280 15 6 7.8672 -5.6849 0.0328 16 1 7.1434 -6.3911 -0.3741 17 6 9.2789 -5.8412 -0.5566 18 6 9.8141 -5.5908 0.8631 19 1 9.9830 -4.5375 1.0866 20 6 10.9870 -6.4635 1.2288 21 8 11.4161 -7.2639 0.4319 22 8 11.5551 -6.3516 2.4398 23 6 8.4665 -6.1217 1.3800 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 3.6545 -3.1486 0.9003 28 1 3.6618 -3.1522 -0.8796 29 1 5.9188 -2.1245 -0.8715 30 1 5.9108 -2.1211 0.9084 31 1 8.0092 -3.5664 0.0291 32 1 9.4871 -6.8434 -0.9312 33 1 9.5443 -5.0588 -1.2676 34 1 12.3049 -6.9323 2.6283 35 1 8.0761 -5.5657 2.2323 36 1 8.4527 -7.2006 1.5347 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902659227.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:15 Heat of formation + Delta-G solvation = -154.227135 kcal Electronic energy + Delta-G solvation = -18100.651614 eV Core-core repulsion = 14969.653190 eV Total energy + Delta-G solvation = -3130.998424 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88516 -40.73413 -39.01650 -37.05999 -36.09427 -34.35144 -33.97044 -30.27335 -27.92970 -26.80359 -25.58805 -23.02941 -22.22388 -21.31138 -20.28911 -19.19540 -18.89026 -18.25907 -17.48483 -16.93128 -16.71320 -16.68474 -16.23006 -15.43687 -15.11010 -14.78247 -14.76644 -14.33025 -13.80903 -13.68306 -13.47618 -13.13804 -12.91771 -12.65572 -12.56001 -12.45128 -11.81984 -11.75742 -11.74458 -11.69680 -11.45575 -11.37356 -11.29498 -10.77982 -10.72823 -10.06474 -8.25673 -6.31283 1.15231 1.40662 1.44324 1.56340 1.68206 2.11939 2.20073 2.41308 3.09671 3.29626 3.38425 3.73051 3.91678 3.99150 4.20934 4.31347 4.40205 4.57400 4.68120 4.73695 4.84101 4.89782 4.94070 4.97368 5.01553 5.07068 5.08891 5.55176 5.60909 5.63708 5.64526 5.71140 6.33331 6.60878 6.78050 6.98961 7.32611 7.34335 8.92128 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.050915 B = 0.003084 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.805142 B = 9075.896462 C = 9323.136777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.005 4.005 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.009 4.009 10 C -0.083 4.083 11 C -0.131 4.131 12 C 0.516 3.484 13 O -0.586 6.586 14 N -0.699 5.699 15 C 0.114 3.886 16 H 0.086 0.914 17 C -0.115 4.115 18 C -0.104 4.104 19 H 0.152 0.848 20 C 0.493 3.507 21 O -0.550 6.550 22 O -0.513 6.513 23 C -0.130 4.130 24 H 0.266 0.734 25 H 0.030 0.970 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.420 0.580 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.426 0.574 35 H 0.087 0.913 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.586 -7.650 3.032 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.201 4.201 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.156 1.156 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.047 4.047 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.305 3.695 13 O -0.466 6.466 14 N -0.352 5.352 15 C 0.008 3.992 16 H 0.104 0.896 17 C -0.153 4.153 18 C -0.122 4.122 19 H 0.169 0.831 20 C 0.337 3.663 21 O -0.441 6.441 22 O -0.326 6.326 23 C -0.169 4.169 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.259 0.741 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.288 0.712 35 H 0.106 0.894 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 27.687 -8.168 2.744 28.997 hybrid contribution 0.171 0.136 0.133 0.256 sum 27.858 -8.031 2.877 29.135 Atomic orbital electron populations 1.70114 1.08768 1.28265 1.52817 1.26230 0.95745 1.04226 0.93896 0.85476 0.79723 0.76922 0.79361 1.18957 1.21410 1.15586 1.21596 0.92887 0.92772 1.50576 0.96349 1.19552 0.93296 0.94450 0.97381 1.21053 0.93795 0.97012 1.00229 1.21728 0.96033 0.92493 1.06757 1.21185 0.82319 0.92049 0.73943 1.90699 1.56818 1.48105 1.50954 1.45540 1.06467 1.08153 1.75082 1.21748 0.95897 0.84538 0.97050 0.89550 1.23265 0.92112 1.05034 0.94884 1.22682 0.89446 1.01255 0.98856 0.83050 1.23564 0.82923 0.81132 0.78644 1.90718 1.63599 1.37916 1.51854 1.84535 1.49562 1.63693 1.34830 1.23358 0.92528 1.02410 0.98585 0.92554 0.95190 0.95009 0.94588 0.94637 0.86235 0.86175 0.74142 0.88142 0.87911 0.71239 0.89419 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.85 13.96 21.45 0.30 -61.55 16 2 C -0.01 -0.32 5.47 84.66 0.46 0.15 16 3 Si 0.96 43.39 27.47 68.60 1.88 45.28 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 7 C -0.54 -32.26 9.66 25.60 0.25 -32.01 16 8 H 0.02 1.23 7.99 -2.91 -0.02 1.21 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.08 -3.33 4.44 30.59 0.14 -3.19 16 11 C -0.13 -3.39 5.70 29.85 0.17 -3.22 16 12 C 0.52 13.92 7.83 87.66 0.69 14.61 16 13 O -0.59 -22.30 15.58 -3.02 -0.05 -22.35 16 14 N -0.70 -11.59 5.26 -440.05 -2.32 -13.90 16 15 C 0.11 1.87 4.32 45.52 0.20 2.07 16 16 H 0.09 1.92 7.46 -2.39 -0.02 1.90 16 17 C -0.11 -1.36 7.15 31.12 0.22 -1.14 16 18 C -0.10 -1.08 4.14 -11.01 -0.05 -1.12 16 19 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 20 C 0.49 6.86 7.85 71.24 0.56 7.41 16 21 O -0.55 -11.36 16.66 21.98 0.37 -10.99 16 22 O -0.51 -5.02 13.42 -51.46 -0.69 -5.71 16 23 C -0.13 -1.77 7.43 31.12 0.23 -1.54 16 24 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 25 H 0.03 1.26 7.58 -2.38 -0.02 1.24 16 26 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 27 H 0.04 1.59 8.10 -2.38 -0.02 1.57 16 28 H 0.03 1.57 8.10 -2.39 -0.02 1.55 16 29 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.42 3.64 8.70 -92.70 -0.81 2.84 16 32 H 0.10 1.44 7.44 -2.39 -0.02 1.42 16 33 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.43 0.87 9.10 -74.06 -0.67 0.19 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -83.59 309.91 2.05 -81.54 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -0.44 Total: 5.99 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 2.99 Total: -18.30 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.02 Total: -75.46 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -0.37 Total: -39.06 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.28 kcal Total: -83.59 2.05 -81.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902659227.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.686 kcal (2) G-P(sol) polarization free energy of solvation -83.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds