Wall clock time and date at job start Sun Mar 29 2020 23:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.53005 * 109.46789 * 119.99972 * 2 1 3 5 5 N 1.46496 * 109.46690 * 174.99949 * 4 2 1 6 6 C 1.46765 * 124.34835 * 90.00247 * 5 4 2 7 7 C 1.54482 * 105.47236 * 162.96211 * 6 5 4 8 8 H 1.09003 * 110.96812 * 267.25550 * 7 6 5 9 9 C 1.50703 * 110.97063 * 143.53517 * 7 6 5 10 10 O 1.21209 * 120.00103 * 3.08185 * 9 7 6 11 11 O 1.34314 * 119.99874 * 183.08890 * 9 7 6 12 12 C 1.34916 * 116.99843 * 180.02562 * 11 9 7 13 13 H 1.08004 * 120.00324 * 0.26666 * 12 11 9 14 14 C 1.38755 * 120.00021 * 179.97438 * 12 11 9 15 15 N 1.31442 * 119.99714 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47093 * 60.00100 * 16 14 12 18 18 H 1.48495 * 109.47002 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47239 * 299.99820 * 16 14 12 20 20 C 1.54628 * 101.80248 * 25.39317 * 7 6 5 21 21 C 1.34421 * 124.35239 * 269.97531 * 5 4 2 22 22 O 1.21278 * 124.93735 * 0.41114 * 21 5 4 23 23 H 1.08999 * 109.47141 * 300.00450 * 1 2 3 24 24 H 1.09003 * 109.47218 * 60.00058 * 1 2 3 25 25 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47141 * 239.99550 * 2 1 3 27 27 H 1.09000 * 109.47355 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47011 * 300.00068 * 3 2 1 29 29 H 1.08999 * 109.47464 * 59.99748 * 3 2 1 30 30 H 1.08997 * 109.47336 * 54.99930 * 4 2 1 31 31 H 1.08998 * 109.46919 * 294.99735 * 4 2 1 32 32 H 1.08997 * 110.24959 * 43.96027 * 6 5 4 33 33 H 1.09007 * 110.31651 * 281.99341 * 6 5 4 34 34 H 0.97000 * 119.99461 * 179.97438 * 15 14 12 35 35 H 1.09003 * 110.48274 * 93.89939 * 20 7 6 36 36 H 1.08993 * 110.48537 * 216.54496 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.4248 0.1771 1.7305 7 6 5.7903 -0.5370 1.8391 8 1 5.9249 -0.9729 2.8291 9 6 6.9195 0.4051 1.5097 10 8 6.6858 1.5690 1.2648 11 8 8.1848 -0.0449 1.4873 12 6 9.1480 0.8503 1.1858 13 1 8.8854 1.8776 0.9803 14 6 10.4767 0.4527 1.1456 15 7 10.7970 -0.7961 1.4018 16 14 11.8103 1.6921 0.7274 17 1 11.7949 2.7915 1.7255 18 1 13.1348 1.0210 0.7514 19 1 11.5615 2.2491 -0.6265 20 6 5.6573 -1.6392 0.7628 21 6 4.1647 -1.8546 0.6358 22 8 3.6440 -2.8158 0.1106 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 4.0918 0.5061 2.7149 33 1 4.4972 1.0283 1.0534 34 1 11.7259 -1.0742 1.3734 35 1 6.0755 -1.2994 -0.1848 36 1 6.1489 -2.5547 1.0915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914676696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:16 Heat of formation + Delta-G solvation = -125.187207 kcal Electronic energy + Delta-G solvation = -19221.898529 eV Core-core repulsion = 16092.159370 eV Total energy + Delta-G solvation = -3129.739158 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55807 -38.89081 -36.69204 -35.87860 -34.90185 -32.27150 -31.71588 -27.70768 -27.14915 -26.62237 -25.33506 -22.89890 -20.75773 -19.77263 -19.06066 -17.81617 -17.23024 -16.61709 -15.88765 -15.41610 -14.76566 -14.55359 -14.43434 -14.28849 -14.04775 -13.44900 -13.21612 -12.82607 -12.64601 -12.46374 -12.36578 -11.86940 -11.67367 -11.44445 -11.33125 -11.18705 -11.12947 -10.83545 -10.75907 -10.50066 -10.46218 -9.90565 -9.69129 -9.11507 -8.64362 -8.57424 -6.47512 -4.16019 2.73546 3.00954 3.07199 3.16194 3.19870 3.39118 3.83580 4.30408 4.56217 4.65460 4.75190 4.84973 4.95423 5.06177 5.17835 5.28688 5.37537 5.45437 5.53926 5.58324 5.64300 5.75322 5.76973 5.89107 5.98404 6.03382 6.15672 6.18831 6.33770 6.58968 6.68208 7.18604 7.32591 7.87075 8.29852 8.59599 9.00829 9.74925 10.69797 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.037678 B = 0.004713 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.955512 B = 5938.987710 C = 6392.693094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.152 4.152 4 C 0.132 3.868 5 N -0.618 5.618 6 C 0.114 3.886 7 C -0.085 4.085 8 H 0.115 0.885 9 C 0.405 3.595 10 O -0.553 6.553 11 O -0.206 6.206 12 C -0.385 4.385 13 H 0.096 0.904 14 C 0.044 3.956 15 N -0.861 5.861 16 Si 0.944 3.056 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.140 4.140 21 C 0.521 3.479 22 O -0.537 6.537 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.271 0.729 35 H 0.110 0.890 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.612 1.204 0.787 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.209 4.209 4 C 0.010 3.990 5 N -0.352 5.352 6 C -0.008 4.008 7 C -0.105 4.105 8 H 0.133 0.867 9 C 0.251 3.749 10 O -0.450 6.450 11 O -0.112 6.112 12 C -0.461 4.461 13 H 0.114 0.886 14 C -0.161 4.161 15 N -0.498 5.498 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.180 4.180 21 C 0.310 3.690 22 O -0.414 6.414 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.801 0.850 0.477 14.833 hybrid contribution 0.729 0.658 -0.120 0.990 sum -14.072 1.508 0.357 14.157 Atomic orbital electron populations 1.21762 0.94636 1.01806 1.01904 1.21557 0.95836 0.97081 0.99089 1.21955 1.02117 0.95234 1.01582 1.21454 0.78279 1.01386 0.97853 1.48311 1.06090 1.22021 1.58759 1.22135 0.86651 0.91488 1.00566 1.21607 0.92041 0.95341 1.01491 0.86738 1.22512 0.85003 0.87461 0.79938 1.90562 1.84805 1.19192 1.50485 1.83865 1.13417 1.41453 1.72470 1.21197 0.84158 0.92090 1.48704 0.88596 1.25346 0.97296 0.97203 0.96208 1.69980 1.19229 1.15740 1.44814 0.85736 0.78663 0.79301 0.79449 1.19441 1.20335 1.19426 1.22310 0.93590 1.00842 1.01268 1.20966 0.89863 0.81479 0.76711 1.90686 1.74547 1.31434 1.44775 0.92576 0.92457 0.92575 0.90805 0.91735 0.92812 0.92682 0.90098 0.90369 0.89970 0.88670 0.91888 0.87174 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.19 37.16 0.34 -0.88 16 2 C -0.12 -1.25 3.13 -90.62 -0.28 -1.53 16 3 C -0.15 -1.63 8.87 37.16 0.33 -1.30 16 4 C 0.13 1.49 5.35 -4.04 -0.02 1.47 16 5 N -0.62 -8.54 2.71 -172.39 -0.47 -9.01 16 6 C 0.11 1.62 6.02 -3.12 -0.02 1.60 16 7 C -0.08 -1.42 3.65 -90.14 -0.33 -1.75 16 8 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 9 C 0.40 9.21 7.13 36.01 0.26 9.47 16 10 O -0.55 -13.63 14.77 -19.05 -0.28 -13.92 16 11 O -0.21 -5.57 9.75 -20.70 -0.20 -5.77 16 12 C -0.39 -10.95 9.64 30.92 0.30 -10.66 16 13 H 0.10 2.73 6.86 -52.48 -0.36 2.37 16 14 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 15 N -0.86 -24.51 13.67 55.48 0.76 -23.76 16 16 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 C -0.14 -2.30 6.41 -26.71 -0.17 -2.47 16 21 C 0.52 8.55 8.02 -10.83 -0.09 8.47 16 22 O -0.54 -10.31 17.59 5.56 0.10 -10.21 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.82 5.44 -51.93 -0.28 0.54 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.49 5.05 -51.93 -0.26 1.23 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.11 1.92 7.89 -51.93 -0.41 1.51 16 36 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -32.47 305.18 -5.39 -37.86 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.09 Total: 1.00 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.22 Total: 3.52 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.29 Total: -32.76 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.39 Total: -29.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.47 -5.39 -37.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914676696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.327 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds