Wall clock time and date at job start Sun Mar 29 2020 23:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.53005 * 109.46789 * 119.99972 * 2 1 3 5 5 N 1.46496 * 109.46690 * 174.99949 * 4 2 1 6 6 C 1.46765 * 124.34835 * 90.00247 * 5 4 2 7 7 C 1.54482 * 105.47236 * 162.96211 * 6 5 4 8 8 H 1.09003 * 110.96812 * 267.25550 * 7 6 5 9 9 C 1.50703 * 110.97063 * 143.53517 * 7 6 5 10 10 O 1.21209 * 120.00103 * 3.08185 * 9 7 6 11 11 O 1.34314 * 119.99874 * 183.08890 * 9 7 6 12 12 C 1.34916 * 116.99843 * 180.02562 * 11 9 7 13 13 H 1.08004 * 120.00324 * 0.26666 * 12 11 9 14 14 C 1.38755 * 120.00021 * 179.97438 * 12 11 9 15 15 N 1.31442 * 119.99714 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99929 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47093 * 60.00100 * 16 14 12 18 18 H 1.48495 * 109.47002 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47239 * 299.99820 * 16 14 12 20 20 C 1.54628 * 101.80248 * 25.39317 * 7 6 5 21 21 C 1.34421 * 124.35239 * 269.97531 * 5 4 2 22 22 O 1.21278 * 124.93735 * 0.41114 * 21 5 4 23 23 H 1.08999 * 109.47141 * 300.00450 * 1 2 3 24 24 H 1.09003 * 109.47218 * 60.00058 * 1 2 3 25 25 H 1.09002 * 109.47377 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47141 * 239.99550 * 2 1 3 27 27 H 1.09000 * 109.47355 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47011 * 300.00068 * 3 2 1 29 29 H 1.08999 * 109.47464 * 59.99748 * 3 2 1 30 30 H 1.08997 * 109.47336 * 54.99930 * 4 2 1 31 31 H 1.08998 * 109.46919 * 294.99735 * 4 2 1 32 32 H 1.08997 * 110.24959 * 43.96027 * 6 5 4 33 33 H 1.09007 * 110.31651 * 281.99341 * 6 5 4 34 34 H 0.97000 * 119.99461 * 179.97438 * 15 14 12 35 35 H 1.09003 * 110.48274 * 93.89939 * 20 7 6 36 36 H 1.08993 * 110.48537 * 216.54496 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1906 6 6 4.4248 0.1771 1.7305 7 6 5.7903 -0.5370 1.8391 8 1 5.9249 -0.9729 2.8291 9 6 6.9195 0.4051 1.5097 10 8 6.6858 1.5690 1.2648 11 8 8.1848 -0.0449 1.4873 12 6 9.1480 0.8503 1.1858 13 1 8.8854 1.8776 0.9803 14 6 10.4767 0.4527 1.1456 15 7 10.7970 -0.7961 1.4018 16 14 11.8103 1.6921 0.7274 17 1 11.7949 2.7915 1.7255 18 1 13.1348 1.0210 0.7514 19 1 11.5615 2.2491 -0.6265 20 6 5.6573 -1.6392 0.7628 21 6 4.1647 -1.8546 0.6358 22 8 3.6440 -2.8158 0.1106 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 4.0918 0.5061 2.7149 33 1 4.4972 1.0283 1.0534 34 1 11.7259 -1.0742 1.3734 35 1 6.0755 -1.2994 -0.1848 36 1 6.1489 -2.5547 1.0915 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914676696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:15 Heat of formation + Delta-G solvation = -145.304202 kcal Electronic energy + Delta-G solvation = -19222.770867 eV Core-core repulsion = 16092.159370 eV Total energy + Delta-G solvation = -3130.611497 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.94759 -40.68585 -37.95930 -37.38299 -36.45138 -34.30314 -32.97150 -28.94699 -28.26999 -27.77935 -27.00013 -24.42299 -21.82596 -21.30282 -20.28762 -19.86043 -18.85268 -17.84619 -17.47200 -16.73545 -16.39805 -16.24281 -15.94515 -15.65743 -15.21564 -14.65712 -14.54948 -14.26714 -13.87184 -13.74325 -13.56152 -13.14274 -13.07187 -12.72458 -12.58850 -12.51299 -12.32658 -12.28030 -12.15441 -11.96446 -11.74398 -11.64707 -11.22400 -10.84701 -10.68424 -9.74882 -8.52806 -6.32448 1.29609 1.36239 1.41219 1.51632 1.61601 1.85114 2.13117 2.62436 2.98068 3.24166 3.41673 3.75526 3.88505 3.94685 4.00626 4.14032 4.45038 4.48689 4.52461 4.61721 4.65680 4.76646 4.80003 4.85029 4.88746 5.00110 5.04900 5.19005 5.23810 5.31886 5.41895 5.57177 5.83092 5.95637 6.63923 6.92617 7.02004 7.75143 8.67047 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.037678 B = 0.004713 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.955512 B = 5938.987710 C = 6392.693094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C -0.149 4.149 4 C 0.126 3.874 5 N -0.606 5.606 6 C 0.122 3.878 7 C -0.077 4.077 8 H 0.142 0.858 9 C 0.409 3.591 10 O -0.572 6.572 11 O -0.236 6.236 12 C -0.421 4.421 13 H 0.085 0.915 14 C -0.002 4.002 15 N -0.900 5.900 16 Si 1.014 2.986 17 H -0.260 1.260 18 H -0.263 1.263 19 H -0.263 1.263 20 C -0.139 4.139 21 C 0.523 3.477 22 O -0.568 6.568 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.278 0.722 35 H 0.094 0.906 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.652 2.108 1.676 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 C -0.206 4.206 4 C 0.006 3.994 5 N -0.338 5.338 6 C -0.001 4.001 7 C -0.097 4.097 8 H 0.160 0.840 9 C 0.256 3.744 10 O -0.470 6.470 11 O -0.144 6.144 12 C -0.496 4.496 13 H 0.103 0.897 14 C -0.202 4.202 15 N -0.537 5.537 16 Si 0.833 3.167 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.188 1.188 20 C -0.179 4.179 21 C 0.311 3.689 22 O -0.448 6.448 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.882 1.775 1.379 16.040 hybrid contribution 0.924 0.398 -0.401 1.083 sum -14.958 2.174 0.977 15.147 Atomic orbital electron populations 1.21719 0.92506 1.02300 1.03010 1.21515 0.97563 0.96616 0.97646 1.21931 1.00533 0.95447 1.02717 1.21756 0.76236 1.02023 0.99422 1.48341 1.07277 1.20782 1.57395 1.22137 0.85255 0.90557 1.02120 1.21698 0.90867 0.94415 1.02707 0.83993 1.23617 0.84991 0.88133 0.77616 1.90538 1.85054 1.20650 1.50750 1.83888 1.14883 1.41870 1.73775 1.21395 0.85419 0.92107 1.50714 0.89713 1.26481 0.99153 0.99363 0.95252 1.70066 1.20252 1.17668 1.45714 0.84727 0.75661 0.76844 0.79457 1.18450 1.18714 1.18750 1.22257 0.94180 1.00975 1.00463 1.20827 0.89685 0.81698 0.76670 1.90671 1.74891 1.32870 1.46372 0.90761 0.92081 0.92422 0.93640 0.94073 0.92451 0.90849 0.90241 0.87122 0.86395 0.89991 0.91230 0.88788 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.11 -2.26 3.13 -10.79 -0.03 -2.30 16 3 C -0.15 -2.95 8.87 71.98 0.64 -2.31 16 4 C 0.13 2.52 5.35 86.38 0.46 2.99 16 5 N -0.61 -15.69 2.71 -817.90 -2.21 -17.91 16 6 C 0.12 3.20 6.02 86.83 0.52 3.73 16 7 C -0.08 -2.51 3.65 -10.48 -0.04 -2.55 16 8 H 0.14 3.89 8.14 -2.39 -0.02 3.87 16 9 C 0.41 18.77 7.13 71.24 0.51 19.28 16 10 O -0.57 -28.48 14.77 20.78 0.31 -28.17 16 11 O -0.24 -13.12 9.75 14.88 0.15 -12.98 16 12 C -0.42 -24.47 9.64 67.94 0.66 -23.82 16 13 H 0.09 4.96 6.86 -2.91 -0.02 4.94 16 14 C 0.00 -0.09 5.49 84.87 0.47 0.37 16 15 N -0.90 -51.85 13.67 21.62 0.30 -51.55 16 16 Si 1.01 42.19 29.55 68.60 2.03 44.22 16 17 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 20 C -0.14 -4.54 6.41 30.61 0.20 -4.35 16 21 C 0.52 16.86 8.02 87.92 0.71 17.56 16 22 O -0.57 -21.77 17.59 -3.02 -0.05 -21.83 16 23 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.04 1.00 5.44 -2.39 -0.01 0.99 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.67 7.93 -2.39 -0.02 1.65 16 31 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 2.47 5.05 -2.38 -0.01 2.46 16 34 H 0.28 14.65 8.31 -92.71 -0.77 13.87 16 35 H 0.09 3.39 7.89 -2.39 -0.02 3.37 16 36 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 Total: -1.00 -71.73 305.18 6.32 -65.41 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.07 Total: 15.53 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 4.74 Total: 7.28 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.92 Total: -69.46 kcal Atomic # 8 Polarization: -63.37 SS G_CDS: 0.40 Total: -62.98 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -71.73 6.32 -65.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914676696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.896 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds