Wall clock time and date at job start Sun Mar 29 2020 23:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 C 1.53005 * 109.47002 * 240.00033 * 2 1 3 5 5 N 1.46494 * 109.47337 * 120.00249 * 2 1 3 6 6 C 1.46771 * 124.35157 * 59.99672 * 5 2 1 7 7 C 1.54471 * 105.47391 * 197.03673 * 6 5 2 8 8 H 1.09005 * 110.96917 * 92.74239 * 7 6 5 9 9 C 1.50700 * 110.97054 * 216.46475 * 7 6 5 10 10 O 1.21212 * 119.99966 * 0.02562 * 9 7 6 11 11 O 1.34314 * 120.00115 * 180.02562 * 9 7 6 12 12 C 1.34912 * 117.00123 * 179.97438 * 11 9 7 13 13 H 1.08006 * 120.00252 * 359.97438 * 12 11 9 14 14 C 1.38756 * 120.00400 * 179.97438 * 12 11 9 15 15 N 1.31448 * 119.99474 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00384 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47194 * 60.00193 * 16 14 12 18 18 H 1.48501 * 109.47207 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47327 * 299.99992 * 16 14 12 20 20 C 1.54631 * 101.76869 * 334.58776 * 7 6 5 21 21 C 1.34419 * 124.35366 * 240.02446 * 5 2 1 22 22 O 1.21291 * 124.93416 * 359.53321 * 21 5 2 23 23 H 1.08995 * 109.46848 * 299.99668 * 1 2 3 24 24 H 1.08997 * 109.46982 * 60.00014 * 1 2 3 25 25 H 1.09005 * 109.46891 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47770 * 180.02562 * 3 2 1 27 27 H 1.09009 * 109.46909 * 300.00661 * 3 2 1 28 28 H 1.09000 * 109.46846 * 59.99384 * 3 2 1 29 29 H 1.08998 * 109.47130 * 300.00019 * 4 2 1 30 30 H 1.08999 * 109.46803 * 60.00297 * 4 2 1 31 31 H 1.09002 * 109.47338 * 179.97438 * 4 2 1 32 32 H 1.09005 * 110.24164 * 78.03998 * 6 5 2 33 33 H 1.08997 * 110.24315 * 316.04298 * 6 5 2 34 34 H 0.97005 * 119.99363 * 180.02562 * 15 14 12 35 35 H 1.09002 * 110.48462 * 143.47645 * 20 7 6 36 36 H 1.09001 * 110.48134 * 266.11858 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 1.7232 -2.0908 1.5225 7 6 2.0546 -2.2428 3.0235 8 1 1.1703 -2.0715 3.6375 9 6 2.6524 -3.5962 3.3096 10 8 2.8117 -4.3911 2.4084 11 8 3.0088 -3.9217 4.5630 12 6 3.5373 -5.1488 4.7504 13 1 3.6567 -5.8192 3.9121 14 6 3.9275 -5.5496 6.0202 15 7 3.7818 -4.7339 7.0406 16 14 4.6599 -7.2483 6.2796 17 1 5.8942 -7.3848 5.4653 18 1 4.9923 -7.4300 7.7155 19 1 3.6762 -8.2803 5.8643 20 6 3.0989 -1.1214 3.2310 21 6 2.7940 -0.1233 2.1360 22 8 3.1920 1.0221 2.1095 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 -1.7489 -1.2493 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2496 32 1 2.3495 -2.7566 0.9286 33 1 0.6693 -2.3053 1.3452 34 1 4.0549 -5.0140 7.9283 35 1 2.9753 -0.6617 4.2116 36 1 4.1090 -1.5152 3.1179 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914932556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:28:21 Heat of formation + Delta-G solvation = -115.629454 kcal Electronic energy + Delta-G solvation = -19485.299124 eV Core-core repulsion = 16355.974421 eV Total energy + Delta-G solvation = -3129.324703 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.76391 -38.96748 -36.64308 -35.92003 -34.80600 -32.21794 -30.45739 -27.83139 -27.43994 -27.05299 -25.60613 -23.16168 -21.33918 -19.68504 -18.51186 -17.80583 -17.12075 -16.44591 -15.70460 -15.16422 -14.69294 -14.44003 -14.36808 -14.02320 -13.82333 -13.60710 -13.34206 -12.82322 -12.52353 -12.26858 -12.13116 -12.07790 -11.72264 -11.62805 -11.39838 -11.28590 -11.13891 -11.03068 -10.88536 -10.49779 -10.45368 -9.88129 -9.38967 -9.05115 -8.63722 -8.55064 -6.47053 -4.15496 2.76300 2.96426 3.07337 3.16248 3.20026 3.39657 3.84053 4.30453 4.58363 4.61709 4.82195 4.89627 4.94820 5.08236 5.18131 5.35662 5.43522 5.45123 5.60474 5.64034 5.73116 5.74605 5.83581 5.86911 5.97772 6.07939 6.17131 6.23924 6.31452 6.63060 6.75797 7.25053 7.33159 7.87660 8.34685 8.60397 9.01307 9.75693 10.70285 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042743 B = 0.004808 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.914953 B = 5821.857573 C = 6147.342604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.140 4.140 4 C -0.158 4.158 5 N -0.611 5.611 6 C 0.116 3.884 7 C -0.084 4.084 8 H 0.114 0.886 9 C 0.405 3.595 10 O -0.553 6.553 11 O -0.206 6.206 12 C -0.385 4.385 13 H 0.096 0.904 14 C 0.044 3.956 15 N -0.862 5.862 16 Si 0.944 3.056 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.269 1.269 20 C -0.141 4.141 21 C 0.523 3.477 22 O -0.534 6.534 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.271 0.729 35 H 0.112 0.888 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 7.662 -11.091 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.089 3.911 3 C -0.197 4.197 4 C -0.216 4.216 5 N -0.346 5.346 6 C -0.007 4.007 7 C -0.104 4.104 8 H 0.132 0.868 9 C 0.251 3.749 10 O -0.450 6.450 11 O -0.112 6.112 12 C -0.461 4.461 13 H 0.114 0.886 14 C -0.161 4.161 15 N -0.498 5.498 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.194 1.194 20 C -0.181 4.181 21 C 0.311 3.689 22 O -0.412 6.412 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.407 8.101 -11.144 14.800 hybrid contribution 0.260 -0.997 0.224 1.055 sum -5.147 7.103 -10.920 14.007 Atomic orbital electron populations 1.22192 0.94409 1.02519 1.02490 1.20441 0.93762 0.92928 0.83920 1.22092 1.02598 0.93229 1.01774 1.22197 1.01941 1.00912 0.96576 1.48476 1.51126 1.12625 1.22389 1.21968 1.02301 0.81840 0.94549 1.21583 0.99899 0.92011 0.96875 0.86835 1.22517 0.80823 0.88499 0.83041 1.90561 1.56035 1.51922 1.46524 1.83864 1.65546 1.35156 1.26668 1.21194 1.40525 0.89017 0.95380 0.88614 1.25347 0.96686 0.99869 0.94165 1.69985 1.44038 1.35842 0.99932 0.85734 0.79497 0.80289 0.77610 1.19443 1.20335 1.19438 1.22318 1.01175 0.94782 0.99825 1.20893 0.77106 0.87552 0.83331 1.90692 1.54424 1.17848 1.78186 0.92080 0.91414 0.92029 0.91234 0.92657 0.91275 0.91940 0.91482 0.92088 0.88938 0.90058 0.91901 0.86953 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.49 37.16 0.32 -1.22 16 2 C 0.17 2.03 1.20 -131.82 -0.16 1.87 16 3 C -0.14 -1.70 6.99 37.16 0.26 -1.44 16 4 C -0.16 -1.64 8.54 37.16 0.32 -1.33 16 5 N -0.61 -8.62 2.76 -157.58 -0.43 -9.05 16 6 C 0.12 1.69 5.96 -3.12 -0.02 1.67 16 7 C -0.08 -1.42 3.65 -90.14 -0.33 -1.75 16 8 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 9 C 0.41 9.29 7.13 36.01 0.26 9.55 16 10 O -0.55 -13.77 14.74 -19.05 -0.28 -14.05 16 11 O -0.21 -5.61 9.75 -20.69 -0.20 -5.81 16 12 C -0.39 -10.99 9.64 30.92 0.30 -10.69 16 13 H 0.10 2.74 6.86 -52.48 -0.36 2.38 16 14 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 15 N -0.86 -24.58 13.67 55.48 0.76 -23.83 16 16 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 C -0.14 -2.31 6.41 -26.74 -0.17 -2.48 16 21 C 0.52 8.50 7.84 -10.86 -0.09 8.42 16 22 O -0.53 -9.79 13.99 5.55 0.08 -9.71 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.57 7.21 -51.93 -0.37 0.20 16 26 H 0.07 0.98 7.06 -51.93 -0.37 0.61 16 27 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.07 0.95 7.08 -51.93 -0.37 0.58 16 29 H 0.06 0.64 7.90 -51.93 -0.41 0.23 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.49 6.96 -51.93 -0.36 1.13 16 33 H 0.08 1.01 7.12 -51.93 -0.37 0.64 16 34 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.11 1.90 7.89 -51.93 -0.41 1.49 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -32.15 300.53 -5.10 -37.25 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.11 Total: 1.23 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 0.59 Total: 3.71 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.32 Total: -32.88 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.40 Total: -29.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.15 -5.10 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914932556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.382 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds