Wall clock time and date at job start Sun Mar 29 2020 23:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46499 * 120.00175 * 269.99780 * 4 3 2 6 6 C 1.50710 * 109.46669 * 90.00210 * 5 4 3 7 7 H 1.07996 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99627 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00138 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99570 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47430 * 60.00343 * 10 8 6 12 12 H 1.48504 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47251 * 299.99695 * 10 8 6 14 14 C 1.34784 * 119.99932 * 90.00252 * 4 3 2 15 15 O 1.21506 * 119.99998 * 180.02562 * 14 4 3 16 16 O 1.34633 * 119.99784 * 0.02562 * 14 4 3 17 17 C 1.45207 * 116.99837 * 180.02562 * 16 14 4 18 18 H 1.09000 * 110.45195 * 332.60542 * 17 16 14 19 19 C 1.54505 * 110.51094 * 209.99888 * 17 16 14 20 20 C 1.54480 * 104.06363 * 241.35620 * 19 17 16 21 21 O 1.44424 * 104.80234 * 23.97725 * 20 19 17 22 22 C 1.44420 * 105.27580 * 319.48923 * 21 20 19 23 23 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 24 24 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 25 25 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 26 26 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 27 27 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 28 28 H 1.08999 * 109.47132 * 209.99845 * 5 4 3 29 29 H 1.08994 * 109.47305 * 330.00525 * 5 4 3 30 30 H 0.96997 * 119.99818 * 179.97438 * 9 8 6 31 31 H 1.09008 * 110.51346 * 0.02562 * 19 17 16 32 32 H 1.08995 * 110.51479 * 122.70584 * 19 17 16 33 33 H 1.08999 * 110.37272 * 142.81037 * 20 19 17 34 34 H 1.09004 * 110.37113 * 265.14851 * 20 19 17 35 35 H 1.08995 * 110.37451 * 281.68025 * 22 21 20 36 36 H 1.09009 * 110.37410 * 159.33864 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 2.5689 1.8591 2.4241 6 6 1.9887 0.7438 3.2553 7 1 1.9447 -0.2594 2.8577 8 6 1.5150 1.0040 4.5238 9 7 1.5699 2.2253 5.0085 10 14 0.7965 -0.3785 5.5542 11 1 1.8274 -1.4265 5.7643 12 1 0.3610 0.1586 6.8684 13 1 -0.3707 -0.9664 4.8490 14 6 4.2537 0.8638 0.9722 15 8 5.0290 0.8833 1.9076 16 8 4.6486 0.3774 -0.2194 17 6 6.0142 -0.1072 -0.3139 18 1 6.6517 0.4081 0.4045 19 6 6.5561 0.0775 -1.7489 20 6 6.8686 -1.3602 -2.2201 21 8 6.0196 -2.2055 -1.4136 22 6 6.0633 -1.6346 -0.0878 23 1 -0.5400 -0.9353 -0.0045 24 1 -0.5401 0.9353 0.0045 25 1 1.8500 -0.9353 -0.0046 26 1 2.6173 1.4049 -0.9334 27 1 1.3589 2.1314 0.0945 28 1 3.4254 2.2904 2.9421 29 1 1.8124 2.6284 2.2697 30 1 1.2363 2.4084 5.9007 31 1 5.7991 0.5330 -2.3875 32 1 7.4630 0.6821 -1.7399 33 1 6.6249 -1.4747 -3.2763 34 1 7.9178 -1.5976 -2.0439 35 1 6.9889 -1.9140 0.4154 36 1 5.2009 -1.9599 0.4942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915815833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:09 Heat of formation + Delta-G solvation = -99.445737 kcal Electronic energy + Delta-G solvation = -19526.984587 eV Core-core repulsion = 16398.361662 eV Total energy + Delta-G solvation = -3128.622924 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21398 -38.83165 -36.34834 -35.27475 -33.04088 -32.12450 -31.44403 -28.89415 -27.58074 -25.42152 -23.64264 -22.78665 -21.18958 -19.97306 -19.47870 -17.41447 -16.82778 -16.62689 -16.24604 -15.79253 -15.24973 -15.03339 -14.63008 -14.40440 -13.58431 -13.10686 -12.92856 -12.82769 -12.33141 -12.18120 -11.85285 -11.61590 -11.55904 -11.27931 -11.09179 -10.88990 -10.79869 -10.59642 -10.41048 -10.20945 -9.73172 -9.69807 -9.57855 -8.88950 -8.42390 -7.82234 -6.04739 -4.08232 2.59093 2.99659 3.33337 3.36892 3.40510 3.57406 3.88565 4.40915 4.45764 4.59079 4.73378 4.93146 5.02424 5.29053 5.34952 5.40655 5.45417 5.51393 5.60492 5.64260 5.76585 5.85093 5.88089 6.11598 6.36794 6.51812 6.77985 7.04714 7.06883 7.20492 7.39590 7.48816 7.91477 8.20083 8.29641 8.89857 9.11942 9.56357 11.03684 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.006001 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.433931 B = 4665.058511 C = 4929.557788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.151 4.151 3 C 0.146 3.854 4 N -0.572 5.572 5 C 0.260 3.740 6 C -0.522 4.522 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.897 5.897 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.638 3.362 15 O -0.570 6.570 16 O -0.364 6.364 17 C 0.074 3.926 18 H 0.102 0.898 19 C -0.154 4.154 20 C 0.045 3.955 21 O -0.371 6.371 22 C 0.033 3.967 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -3.440 -14.366 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.170 4.170 3 C 0.022 3.978 4 N -0.310 5.310 5 C 0.142 3.858 6 C -0.561 4.561 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.536 5.536 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.391 3.609 15 O -0.459 6.459 16 O -0.279 6.279 17 C 0.017 3.983 18 H 0.120 0.880 19 C -0.191 4.191 20 C -0.031 4.031 21 O -0.290 6.290 22 C -0.044 4.044 23 H 0.110 0.890 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.350 -3.503 -13.985 15.754 hybrid contribution -0.327 -0.631 0.901 1.148 sum 6.023 -4.134 -13.084 14.985 Atomic orbital electron populations 1.23644 0.95744 1.01340 1.01490 1.23189 0.96144 0.98764 0.98897 1.20549 0.92302 0.95722 0.89202 1.47337 1.07185 1.62207 1.14306 1.19409 0.95988 0.94216 0.76188 1.21380 1.39879 0.95246 0.99592 0.92295 1.24897 0.95944 0.95737 0.97397 1.69914 1.46854 1.19237 1.17570 0.86566 0.79426 0.82195 0.79306 1.20240 1.21188 1.20189 1.18207 0.84035 0.77826 0.80852 1.90945 1.53331 1.61266 1.40315 1.86354 1.31454 1.74982 1.35135 1.23879 0.81526 0.94881 0.98034 0.87979 1.23107 1.02092 0.98548 0.95374 1.23423 0.94703 0.88352 0.96671 1.89164 1.68338 1.51194 1.20261 1.23860 1.03302 0.91625 0.85612 0.89046 0.88687 0.87920 0.90425 0.90133 0.93545 0.94271 0.92654 0.88970 0.89223 0.88770 0.92088 0.90713 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.92 14.32 29.02 0.42 -2.51 16 2 C -0.15 -2.63 9.85 -36.02 -0.35 -2.98 16 3 C 0.15 2.57 5.90 -5.19 -0.03 2.54 16 4 N -0.57 -12.59 2.44 -182.24 -0.44 -13.04 16 5 C 0.26 6.76 5.20 -5.19 -0.03 6.74 16 6 C -0.52 -14.73 9.39 -34.43 -0.32 -15.06 16 7 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.64 14.02 8.39 54.06 0.45 14.47 16 15 O -0.57 -14.36 15.17 -19.28 -0.29 -14.65 16 16 O -0.36 -6.57 8.70 -40.31 -0.35 -6.92 16 17 C 0.07 1.09 3.49 -25.16 -0.09 1.00 16 18 H 0.10 1.56 7.14 -51.93 -0.37 1.19 16 19 C -0.15 -1.63 6.90 -25.16 -0.17 -1.80 16 20 C 0.05 0.46 7.63 37.93 0.29 0.75 16 21 O -0.37 -5.22 11.65 -35.23 -0.41 -5.63 16 22 C 0.03 0.47 7.38 37.93 0.28 0.75 16 23 H 0.09 1.32 8.06 -52.49 -0.42 0.90 16 24 H 0.09 1.41 7.84 -52.49 -0.41 1.00 16 25 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 26 H 0.08 1.20 7.37 -51.93 -0.38 0.82 16 27 H 0.08 1.33 7.55 -51.93 -0.39 0.94 16 28 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 29 H 0.04 1.02 7.89 -51.93 -0.41 0.61 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.09 0.98 8.00 -51.92 -0.42 0.57 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 1.63 8.09 -51.92 -0.42 1.21 16 LS Contribution 312.13 15.07 4.70 4.70 Total: -1.00 -32.64 312.13 -6.00 -38.64 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.27 Total: 0.07 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 0.34 Total: 5.56 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.29 Total: -38.74 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.05 Total: -27.21 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.64 -6.00 -38.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915815833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.804 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds