Wall clock time and date at job start Sun Mar 29 2020 23:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 N 1.46502 * 109.46804 * 125.27541 * 3 2 1 5 5 C 1.46499 * 120.00175 * 269.99780 * 4 3 2 6 6 C 1.50710 * 109.46669 * 90.00210 * 5 4 3 7 7 H 1.07996 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99627 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00138 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99570 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47430 * 60.00343 * 10 8 6 12 12 H 1.48504 * 109.47218 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47251 * 299.99695 * 10 8 6 14 14 C 1.34784 * 119.99932 * 90.00252 * 4 3 2 15 15 O 1.21506 * 119.99998 * 180.02562 * 14 4 3 16 16 O 1.34633 * 119.99784 * 0.02562 * 14 4 3 17 17 C 1.45207 * 116.99837 * 180.02562 * 16 14 4 18 18 H 1.09000 * 110.45195 * 332.60542 * 17 16 14 19 19 C 1.54505 * 110.51094 * 209.99888 * 17 16 14 20 20 C 1.54480 * 104.06363 * 241.35620 * 19 17 16 21 21 O 1.44424 * 104.80234 * 23.97725 * 20 19 17 22 22 C 1.44420 * 105.27580 * 319.48923 * 21 20 19 23 23 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 24 24 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 25 25 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 26 26 H 1.08998 * 109.47474 * 245.27493 * 3 2 1 27 27 H 1.09001 * 109.47291 * 5.27780 * 3 2 1 28 28 H 1.08999 * 109.47132 * 209.99845 * 5 4 3 29 29 H 1.08994 * 109.47305 * 330.00525 * 5 4 3 30 30 H 0.96997 * 119.99818 * 179.97438 * 9 8 6 31 31 H 1.09008 * 110.51346 * 0.02562 * 19 17 16 32 32 H 1.08995 * 110.51479 * 122.70584 * 19 17 16 33 33 H 1.08999 * 110.37272 * 142.81037 * 20 19 17 34 34 H 1.09004 * 110.37113 * 265.14851 * 20 19 17 35 35 H 1.08995 * 110.37451 * 281.68025 * 22 21 20 36 36 H 1.09009 * 110.37410 * 159.33864 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9984 1.3292 1.1276 5 6 2.5689 1.8591 2.4241 6 6 1.9887 0.7438 3.2553 7 1 1.9447 -0.2594 2.8577 8 6 1.5150 1.0040 4.5238 9 7 1.5699 2.2253 5.0085 10 14 0.7965 -0.3785 5.5542 11 1 1.8274 -1.4265 5.7643 12 1 0.3610 0.1586 6.8684 13 1 -0.3707 -0.9664 4.8490 14 6 4.2537 0.8638 0.9722 15 8 5.0290 0.8833 1.9076 16 8 4.6486 0.3774 -0.2194 17 6 6.0142 -0.1072 -0.3139 18 1 6.6517 0.4081 0.4045 19 6 6.5561 0.0775 -1.7489 20 6 6.8686 -1.3602 -2.2201 21 8 6.0196 -2.2055 -1.4136 22 6 6.0633 -1.6346 -0.0878 23 1 -0.5400 -0.9353 -0.0045 24 1 -0.5401 0.9353 0.0045 25 1 1.8500 -0.9353 -0.0046 26 1 2.6173 1.4049 -0.9334 27 1 1.3589 2.1314 0.0945 28 1 3.4254 2.2904 2.9421 29 1 1.8124 2.6284 2.2697 30 1 1.2363 2.4084 5.9007 31 1 5.7991 0.5330 -2.3875 32 1 7.4630 0.6821 -1.7399 33 1 6.6249 -1.4747 -3.2763 34 1 7.9178 -1.5976 -2.0439 35 1 6.9889 -1.9140 0.4154 36 1 5.2009 -1.9599 0.4942 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915815833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:09 Heat of formation + Delta-G solvation = -120.801551 kcal Electronic energy + Delta-G solvation = -19527.910644 eV Core-core repulsion = 16398.361662 eV Total energy + Delta-G solvation = -3129.548982 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69390 -40.08449 -37.88069 -36.92656 -35.00131 -33.78043 -32.53240 -30.05539 -29.43987 -26.95420 -25.46358 -23.96580 -22.40463 -21.49641 -20.89417 -19.00144 -18.65129 -18.23890 -17.54253 -17.11743 -16.68717 -16.57157 -16.07068 -15.86969 -15.09834 -14.62273 -14.39766 -14.21467 -13.96422 -13.39169 -13.28318 -13.15419 -12.99197 -12.95818 -12.61247 -12.51461 -12.26821 -12.22894 -11.89257 -11.70814 -11.65806 -11.44348 -10.74946 -10.63274 -10.22827 -9.64177 -8.21566 -6.33496 1.10396 1.37831 1.40750 1.48327 1.61148 1.86890 2.39140 2.90308 3.05027 3.11335 3.44898 3.68753 3.98395 4.04735 4.16468 4.22254 4.31203 4.36634 4.48484 4.61134 4.77829 4.78044 4.84212 4.90655 4.97924 5.07234 5.15737 5.36855 5.47931 5.72926 5.75910 5.76623 5.96743 6.04938 6.54364 6.72517 7.28644 7.44571 8.86078 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.006001 C = 0.005679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.433931 B = 4665.058511 C = 4929.557788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.144 3.856 4 N -0.578 5.578 5 C 0.275 3.725 6 C -0.534 4.534 7 H 0.051 0.949 8 C 0.014 3.986 9 N -0.926 5.926 10 Si 0.960 3.040 11 H -0.280 1.280 12 H -0.277 1.277 13 H -0.263 1.263 14 C 0.639 3.361 15 O -0.611 6.611 16 O -0.355 6.355 17 C 0.057 3.943 18 H 0.093 0.907 19 C -0.143 4.143 20 C 0.042 3.958 21 O -0.392 6.392 22 C 0.036 3.964 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.008 0.992 29 H 0.038 0.962 30 H 0.267 0.733 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 -4.276 -15.785 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.023 3.977 4 N -0.315 5.315 5 C 0.156 3.844 6 C -0.573 4.573 7 H 0.069 0.931 8 C -0.186 4.186 9 N -0.566 5.566 10 Si 0.785 3.215 11 H -0.206 1.206 12 H -0.202 1.202 13 H -0.187 1.187 14 C 0.393 3.607 15 O -0.503 6.503 16 O -0.270 6.270 17 C 0.001 3.999 18 H 0.111 0.889 19 C -0.180 4.180 20 C -0.034 4.034 21 O -0.312 6.312 22 C -0.042 4.042 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.130 -4.348 -15.466 17.195 hybrid contribution -0.216 -0.378 1.248 1.322 sum 5.914 -4.726 -14.218 16.108 Atomic orbital electron populations 1.23902 0.95228 1.02711 0.98745 1.23111 0.96785 0.98095 1.01401 1.20788 0.92110 0.96444 0.88392 1.47230 1.08121 1.61970 1.14184 1.18921 0.94051 0.93708 0.77763 1.21567 1.40115 0.95258 1.00341 0.93115 1.25718 0.96239 0.98097 0.98507 1.70017 1.47495 1.21022 1.18068 0.85576 0.78845 0.79056 0.78010 1.20572 1.20213 1.18724 1.18272 0.83681 0.77373 0.81395 1.90904 1.54539 1.62844 1.42006 1.86359 1.33602 1.74414 1.32598 1.24352 0.79618 0.95079 1.00819 0.88854 1.23169 1.03048 0.99693 0.92114 1.23725 0.95474 0.86996 0.97177 1.89140 1.69616 1.52144 1.20257 1.23777 1.03095 0.91205 0.86081 0.87500 0.87453 0.89078 0.88205 0.88982 0.97431 0.94454 0.92358 0.88780 0.86340 0.86608 0.89678 0.88664 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 14.32 67.79 0.97 -4.04 16 2 C -0.17 -5.94 9.85 25.65 0.25 -5.69 16 3 C 0.14 4.99 5.90 85.63 0.50 5.49 16 4 N -0.58 -25.84 2.44 -960.90 -2.34 -28.18 16 5 C 0.28 14.75 5.20 85.64 0.45 15.19 16 6 C -0.53 -30.59 9.39 25.60 0.24 -30.35 16 7 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 8 C 0.01 0.78 5.46 84.66 0.46 1.24 16 9 N -0.93 -55.16 13.29 21.45 0.28 -54.88 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 14 C 0.64 28.75 8.39 129.79 1.09 29.84 16 15 O -0.61 -32.00 15.17 19.82 0.30 -31.70 16 16 O -0.36 -12.84 8.70 -55.43 -0.48 -13.32 16 17 C 0.06 1.66 3.49 31.61 0.11 1.77 16 18 H 0.09 2.88 7.14 -2.39 -0.02 2.86 16 19 C -0.14 -2.68 6.90 31.61 0.22 -2.46 16 20 C 0.04 0.72 7.63 72.49 0.55 1.27 16 21 O -0.39 -10.48 11.65 -148.98 -1.74 -12.22 16 22 C 0.04 1.00 7.38 72.49 0.54 1.54 16 23 H 0.11 2.84 8.06 -2.91 -0.02 2.81 16 24 H 0.11 2.93 7.84 -2.91 -0.02 2.90 16 25 H 0.09 3.29 8.06 -2.91 -0.02 3.26 16 26 H 0.10 2.96 7.37 -2.39 -0.02 2.95 16 27 H 0.09 2.94 7.55 -2.39 -0.02 2.92 16 28 H 0.01 0.46 7.42 -2.39 -0.02 0.44 16 29 H 0.04 1.99 7.89 -2.39 -0.02 1.98 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.09 1.76 8.00 -2.38 -0.02 1.74 16 32 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.07 2.46 8.09 -2.38 -0.02 2.44 16 Total: -1.00 -71.41 312.13 4.48 -66.93 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 1.05 Total: 12.56 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.38 Total: 13.81 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.06 Total: -83.06 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -1.92 Total: -57.24 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -71.41 4.48 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915815833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.875 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds