Wall clock time and date at job start Sun Mar 29 2020 23:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99884 * 2 1 4 4 C 1.50700 * 109.47081 * 179.97438 * 3 2 1 5 5 C 1.50704 * 120.00180 * 279.56923 * 4 3 2 6 6 C 1.32997 * 120.00285 * 99.57034 * 4 3 2 7 7 C 1.47099 * 119.99784 * 350.62173 * 6 4 3 8 8 O 1.21613 * 120.00085 * 353.33993 * 7 6 4 9 9 N 1.34774 * 120.00294 * 173.06232 * 7 6 4 10 10 C 1.47071 * 136.05345 * 359.63464 * 9 7 6 11 11 C 1.53239 * 88.08037 * 207.20190 * 10 9 7 12 12 O 1.42901 * 114.19965 * 87.72681 * 11 10 9 13 13 C 1.50698 * 114.32466 * 220.47015 * 11 10 9 14 14 H 1.07997 * 120.00612 * 93.76067 * 13 11 10 15 15 C 1.37880 * 119.99744 * 273.75551 * 13 11 10 16 16 N 1.31514 * 120.00211 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 120.00022 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46886 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47094 * 120.00162 * 17 15 13 20 20 H 1.48504 * 109.46962 * 240.00316 * 17 15 13 21 21 C 1.47071 * 136.06065 * 179.97438 * 9 7 6 22 22 H 1.08999 * 109.47238 * 300.00505 * 1 2 3 23 23 H 1.09002 * 109.46889 * 60.00729 * 1 2 3 24 24 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47738 * 59.99657 * 3 2 1 26 26 H 1.09004 * 109.46959 * 299.99359 * 3 2 1 27 27 H 1.09004 * 109.47116 * 270.00409 * 5 4 3 28 28 H 1.08999 * 109.46731 * 29.99680 * 5 4 3 29 29 H 1.08994 * 109.47342 * 150.00082 * 5 4 3 30 30 H 1.08000 * 120.00140 * 170.62877 * 6 4 3 31 31 H 1.09000 * 113.46635 * 321.93271 * 10 9 7 32 32 H 1.08998 * 113.46987 * 92.37733 * 10 9 7 33 33 H 0.96696 * 114.00134 * 86.30137 * 12 11 10 34 34 H 0.97000 * 119.99755 * 179.97438 * 16 15 13 35 35 H 1.08992 * 113.46800 * 267.62871 * 21 9 7 36 36 H 1.08997 * 113.46313 * 38.01136 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2460 0.9109 1.2879 6 6 4.1910 1.3247 -1.1348 7 6 3.4735 1.3870 -2.4175 8 8 2.2738 1.1914 -2.4532 9 7 4.1447 1.6664 -3.5523 10 6 5.5394 1.9645 -3.9115 11 6 5.0070 2.7574 -5.1100 12 8 4.7132 4.1261 -4.8230 13 6 5.7991 2.5715 -6.3785 14 1 5.5002 1.8227 -7.0970 15 6 6.9054 3.3575 -6.6218 16 7 7.2698 4.2692 -5.7467 17 14 7.8869 3.1277 -8.1946 18 1 7.2740 2.0460 -9.0068 19 1 7.8808 4.3933 -8.9713 20 1 9.2856 2.7612 -7.8561 21 6 3.8040 1.8133 -4.9754 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 1.6886 1.8465 0.8899 26 1 1.6886 1.8463 -0.8901 27 1 4.5028 1.8548 1.7690 28 1 3.6085 0.3266 1.9514 29 1 5.1572 0.3523 1.0745 30 1 5.2688 1.3910 -1.1152 31 1 6.0539 2.5841 -3.1770 32 1 6.1128 1.0820 -4.1951 33 1 5.4731 4.7178 -4.9087 34 1 8.0483 4.8219 -5.9178 35 1 3.9108 0.8901 -5.5448 36 1 2.8452 2.3037 -5.1437 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118310291.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:27 Heat of formation + Delta-G solvation = -87.386517 kcal Electronic energy + Delta-G solvation = -19162.756762 eV Core-core repulsion = 16034.656765 eV Total energy + Delta-G solvation = -3128.099997 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.37835 -39.78231 -38.42230 -35.94170 -35.64956 -34.13058 -30.99716 -28.81491 -28.61688 -27.05312 -26.80809 -26.12578 -22.44067 -20.64215 -19.58279 -19.13329 -18.13546 -17.45121 -17.21559 -16.84890 -16.71636 -16.19213 -15.95222 -15.18528 -14.97563 -14.77988 -14.35417 -14.07788 -13.96625 -13.78047 -13.42080 -13.33854 -12.96913 -12.78737 -12.67327 -12.50365 -12.23578 -12.18338 -12.12324 -11.33405 -10.99595 -10.68570 -10.40826 -10.29577 -10.09585 -9.48027 -8.27860 -6.45174 0.21184 1.46324 1.50952 1.61530 2.00477 2.21016 2.41383 2.94110 3.04393 3.52233 3.77750 3.87355 4.05832 4.16229 4.32711 4.45190 4.48464 4.54184 4.59957 4.62107 4.70385 4.77848 4.80021 4.81786 4.90867 4.95491 5.07073 5.23270 5.30855 5.58683 5.72720 5.90506 6.21409 6.61089 6.89146 7.17675 7.29348 7.48235 8.78667 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.041692 B = 0.004614 C = 0.004391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.434608 B = 6067.153486 C = 6375.288973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.398 6.398 3 C 0.071 3.929 4 C -0.033 4.033 5 C -0.115 4.115 6 C -0.209 4.209 7 C 0.551 3.449 8 O -0.582 6.582 9 N -0.635 5.635 10 C 0.087 3.913 11 C 0.219 3.781 12 O -0.587 6.587 13 C -0.553 4.553 14 H 0.074 0.926 15 C 0.033 3.967 16 N -0.918 5.918 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.275 1.275 21 C 0.107 3.893 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.098 0.902 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.145 0.855 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.390 0.610 34 H 0.277 0.723 35 H 0.101 0.899 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -5.122 11.120 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.318 6.318 3 C -0.004 4.004 4 C -0.035 4.035 5 C -0.171 4.171 6 C -0.230 4.230 7 C 0.346 3.654 8 O -0.466 6.466 9 N -0.367 5.367 10 C -0.036 4.036 11 C 0.178 3.822 12 O -0.400 6.400 13 C -0.591 4.591 14 H 0.092 0.908 15 C -0.168 4.168 16 N -0.559 5.559 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.016 4.016 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.063 -5.531 11.426 13.328 hybrid contribution 0.799 0.597 -1.088 1.476 sum -3.264 -4.934 10.338 11.911 Atomic orbital electron populations 1.22828 0.79930 1.03506 1.00173 1.87817 1.21137 1.27307 1.95521 1.21962 0.90395 0.86228 1.01844 1.22648 0.94668 0.90153 0.96066 1.20997 1.00257 1.03488 0.92333 1.22506 1.01110 1.08763 0.90617 1.18758 0.86339 0.76045 0.84261 1.90624 1.15734 1.53653 1.86583 1.49738 1.12756 1.67459 1.06771 1.23948 0.82520 0.99413 0.97689 1.19772 0.90625 0.80000 0.91839 1.86027 1.42343 1.19359 1.92266 1.21692 1.11366 1.20761 1.05261 0.90762 1.25775 0.97381 0.93788 0.99812 1.69331 1.27570 1.22392 1.36574 0.85287 0.78117 0.78108 0.78786 1.19126 1.20734 1.20080 1.23313 0.99303 0.98994 0.79977 0.92255 0.95372 0.88360 0.91107 0.91645 0.88446 0.89697 0.89852 0.83712 0.91826 0.88863 0.75454 0.91293 0.88101 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -12.72 10.51 -142.49 -1.50 -14.22 16 3 C 0.07 2.19 5.11 71.24 0.36 2.56 16 4 C -0.03 -0.95 5.73 -17.61 -0.10 -1.05 16 5 C -0.11 -2.14 10.05 71.24 0.72 -1.42 16 6 C -0.21 -7.02 9.45 23.43 0.22 -6.80 16 7 C 0.55 23.53 7.84 86.57 0.68 24.20 16 8 O -0.58 -27.32 13.81 2.42 0.03 -27.28 16 9 N -0.64 -27.90 3.69 -863.48 -3.19 -31.09 16 10 C 0.09 3.77 7.75 83.10 0.64 4.42 16 11 C 0.22 10.67 1.57 -11.29 -0.02 10.66 16 12 O -0.59 -31.15 13.54 -148.98 -2.02 -33.16 16 13 C -0.55 -27.60 8.69 25.60 0.22 -27.38 16 14 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 15 C 0.03 1.60 5.39 84.66 0.46 2.06 16 16 N -0.92 -46.02 11.01 21.45 0.24 -45.78 16 17 Si 0.97 38.97 29.54 68.60 2.03 41.00 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 21 C 0.11 4.83 8.04 83.19 0.67 5.50 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.07 2.48 5.19 -3.65 -0.02 2.46 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 29 H 0.08 1.40 8.07 -2.39 -0.02 1.38 16 30 H 0.15 4.24 8.00 -2.91 -0.02 4.21 16 31 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.09 3.77 8.10 -2.39 -0.02 3.75 16 33 H 0.39 20.79 6.32 -74.06 -0.47 20.33 16 34 H 0.28 13.06 8.31 -92.71 -0.77 12.29 16 35 H 0.10 4.15 8.10 -2.39 -0.02 4.13 16 36 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -61.83 309.08 1.30 -60.53 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.60 Total: 35.23 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.10 Total: 14.77 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -2.95 Total: -76.87 kcal Atomic # 8 Polarization: -71.18 SS G_CDS: -3.48 Total: -74.66 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -61.83 1.30 -60.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118310291.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.858 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds