Wall clock time and date at job start Sun Mar 29 2020 23:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00682 * 2 1 4 4 C 1.50701 * 109.47713 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99924 * 179.97438 * 4 3 2 6 6 C 1.32990 * 119.99576 * 359.97438 * 4 3 2 7 7 C 1.47107 * 119.99729 * 172.81981 * 6 4 3 8 8 O 1.21605 * 119.99649 * 354.01029 * 7 6 4 9 9 N 1.34782 * 119.99825 * 174.00740 * 7 6 4 10 10 C 1.47578 * 134.48849 * 179.97438 * 9 7 6 11 11 C 1.53952 * 86.11273 * 155.36020 * 10 9 7 12 12 O 1.42895 * 113.74413 * 269.15562 * 11 10 9 13 13 C 1.50703 * 113.74000 * 137.95154 * 11 10 9 14 14 H 1.07997 * 119.99778 * 1.92927 * 13 11 10 15 15 C 1.37869 * 120.00120 * 181.92274 * 13 11 10 16 16 N 1.31521 * 119.99856 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00295 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47295 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.46944 * 300.00512 * 17 15 13 20 20 H 1.48502 * 109.46852 * 60.00285 * 17 15 13 21 21 C 1.47812 * 134.45726 * 359.87243 * 9 7 6 22 22 H 1.09003 * 109.46787 * 300.00093 * 1 2 3 23 23 H 1.08998 * 109.47295 * 59.99534 * 1 2 3 24 24 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46801 * 59.99654 * 3 2 1 26 26 H 1.09005 * 109.46552 * 300.00500 * 3 2 1 27 27 H 1.08999 * 109.47231 * 264.38853 * 5 4 3 28 28 H 1.08999 * 109.47358 * 24.39024 * 5 4 3 29 29 H 1.09007 * 109.46966 * 144.38977 * 5 4 3 30 30 H 1.08006 * 120.00156 * 352.82505 * 6 4 3 31 31 H 1.08998 * 113.76951 * 41.06449 * 10 9 7 32 32 H 1.08992 * 113.87654 * 269.67093 * 10 9 7 33 33 H 0.96696 * 114.00530 * 178.07641 * 12 11 10 34 34 H 0.97006 * 119.99604 * 179.97438 * 16 15 13 35 35 H 1.08994 * 113.76780 * 90.37297 * 21 9 7 36 36 H 1.09002 * 113.83179 * 318.91346 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3668 2.4278 -0.0013 6 6 4.0844 -0.0143 -0.0006 7 6 5.5418 -0.1349 -0.1604 8 8 6.2107 0.8517 -0.4013 9 7 6.1357 -1.3388 -0.0399 10 6 7.5278 -1.8194 -0.1343 11 6 7.0753 -2.9859 0.7628 12 8 7.2364 -2.7332 2.1600 13 6 7.6245 -4.3243 0.3406 14 1 8.2964 -4.3907 -0.5023 15 6 7.2695 -5.4638 1.0306 16 7 6.4510 -5.3829 2.0570 17 14 7.9507 -7.1228 0.5078 18 1 7.4196 -8.1808 1.4042 19 1 7.5408 -7.4077 -0.8907 20 1 9.4331 -7.0985 0.5940 21 6 5.6535 -2.7074 0.2419 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 4.6550 2.6699 -1.0243 28 1 3.8019 3.2578 0.4231 29 1 5.2613 2.2537 0.5967 30 1 3.4788 -0.9009 0.1168 31 1 8.2539 -1.1579 0.3382 32 1 7.8217 -2.1256 -1.1382 33 1 6.9261 -3.4517 2.7280 34 1 6.2009 -6.1848 2.5422 35 1 5.3941 -3.2745 -0.6520 36 1 4.8857 -2.7536 1.0142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118310292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:29 Heat of formation + Delta-G solvation = -75.859454 kcal Electronic energy + Delta-G solvation = -19078.207113 eV Core-core repulsion = 15950.606966 eV Total energy + Delta-G solvation = -3127.600147 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52097 -38.32034 -37.36553 -34.27684 -33.79176 -32.17673 -29.25663 -27.85598 -27.07695 -25.51813 -25.17090 -24.96556 -20.70951 -19.03169 -17.77782 -17.30915 -16.57877 -16.29023 -16.02722 -15.19679 -15.15791 -14.59006 -14.49042 -14.04991 -13.48107 -13.21915 -12.92297 -12.45316 -12.38192 -12.13647 -11.93282 -11.66919 -11.58538 -11.51165 -11.18733 -11.00573 -10.96104 -10.49775 -10.24144 -9.97958 -9.47680 -9.00882 -8.85182 -8.71119 -8.32394 -7.68858 -6.34658 -4.45035 1.70998 3.19287 3.24853 3.27306 3.58496 3.69540 3.89242 4.22521 4.80774 4.90376 5.08348 5.12665 5.20887 5.28784 5.31387 5.49507 5.54583 5.70211 5.77650 6.00160 6.05150 6.21871 6.39475 6.44176 6.57538 6.61093 6.67144 6.75589 6.92411 7.09418 7.17147 7.67122 7.87265 8.57579 8.58984 8.89266 9.25959 9.47656 10.72015 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.005177 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.858270 B = 5406.960299 C = 6138.625458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.097 3.903 4 C -0.074 4.074 5 C -0.111 4.111 6 C -0.177 4.177 7 C 0.554 3.446 8 O -0.566 6.566 9 N -0.627 5.627 10 C 0.112 3.888 11 C 0.238 3.762 12 O -0.573 6.573 13 C -0.537 4.537 14 H 0.070 0.930 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.907 3.093 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.080 3.920 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.133 0.867 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.391 0.609 34 H 0.273 0.727 35 H 0.081 0.919 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 8.031 -2.983 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C 0.021 3.979 4 C -0.076 4.076 5 C -0.167 4.167 6 C -0.198 4.198 7 C 0.347 3.653 8 O -0.449 6.449 9 N -0.359 5.359 10 C -0.010 4.010 11 C 0.196 3.804 12 O -0.384 6.384 13 C -0.576 4.576 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.043 4.043 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.106 0.894 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.151 0.849 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.651 8.974 -3.186 13.558 hybrid contribution -0.416 -1.362 -0.065 1.426 sum -10.067 7.611 -3.251 13.033 Atomic orbital electron populations 1.22749 0.80857 1.03030 0.99812 1.87932 1.19717 1.27349 1.95430 1.21372 0.90709 0.85103 1.00734 1.22210 0.93425 0.96000 0.95991 1.20964 0.99222 0.92924 1.03560 1.22467 0.93903 0.98860 1.04528 1.18210 0.87747 0.81994 0.77352 1.90666 1.66418 1.36226 1.51614 1.50145 1.11233 1.06777 1.67768 1.23420 0.83601 0.94430 0.99573 1.19854 0.88921 0.91019 0.80563 1.86056 1.86703 1.48655 1.17014 1.21473 1.29668 0.90786 1.15637 0.91141 1.25064 0.93773 0.99844 0.94336 1.69407 1.33983 1.30480 1.19943 0.86400 0.79508 0.82037 0.78629 1.21030 1.19923 1.19876 1.24329 1.02400 0.77932 0.99603 0.94049 0.94105 0.89385 0.91782 0.91567 0.90693 0.93267 0.88833 0.84914 0.91213 0.89730 0.75421 0.91677 0.90081 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.14 9.13 -35.23 -0.32 -5.46 16 3 C 0.10 1.15 6.32 36.01 0.23 1.38 16 4 C -0.07 -1.13 6.11 -101.17 -0.62 -1.75 16 5 C -0.11 -1.60 8.48 36.00 0.31 -1.30 16 6 C -0.18 -3.23 9.14 -37.80 -0.35 -3.58 16 7 C 0.55 11.97 7.85 -12.66 -0.10 11.87 16 8 O -0.57 -12.99 14.01 5.27 0.07 -12.92 16 9 N -0.63 -14.03 3.61 -179.52 -0.65 -14.68 16 10 C 0.11 2.53 8.23 -2.96 -0.02 2.51 16 11 C 0.24 5.85 1.40 -90.83 -0.13 5.73 16 12 O -0.57 -15.05 13.49 -35.23 -0.48 -15.53 16 13 C -0.54 -13.69 8.61 -34.44 -0.30 -13.98 16 14 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 15 C 0.07 1.82 5.39 -17.82 -0.10 1.73 16 16 N -0.90 -23.02 11.20 55.43 0.62 -22.40 16 17 Si 0.91 19.63 29.54 -169.99 -5.02 14.60 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 C 0.08 1.80 7.88 -2.83 -0.02 1.78 16 22 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 28 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.09 1.62 6.14 -51.93 -0.32 1.30 16 30 H 0.13 2.43 6.77 -52.48 -0.36 2.07 16 31 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.08 1.76 8.09 -51.93 -0.42 1.34 16 33 H 0.39 10.31 6.60 45.56 0.30 10.61 16 34 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.08 1.75 8.09 -51.93 -0.42 1.33 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 307.65 15.07 4.64 4.64 Total: -1.00 -29.01 307.65 -5.68 -34.69 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -4.56 Total: 11.27 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 0.02 Total: 5.79 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.03 Total: -37.07 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.72 Total: -33.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.01 -5.68 -34.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118310292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.173 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds