Wall clock time and date at job start Sun Mar 29 2020 23:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00682 * 2 1 4 4 C 1.50701 * 109.47713 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99924 * 179.97438 * 4 3 2 6 6 C 1.32990 * 119.99576 * 359.97438 * 4 3 2 7 7 C 1.47107 * 119.99729 * 172.81981 * 6 4 3 8 8 O 1.21605 * 119.99649 * 354.01029 * 7 6 4 9 9 N 1.34782 * 119.99825 * 174.00740 * 7 6 4 10 10 C 1.47578 * 134.48849 * 179.97438 * 9 7 6 11 11 C 1.53952 * 86.11273 * 155.36020 * 10 9 7 12 12 O 1.42895 * 113.74413 * 269.15562 * 11 10 9 13 13 C 1.50703 * 113.74000 * 137.95154 * 11 10 9 14 14 H 1.07997 * 119.99778 * 1.92927 * 13 11 10 15 15 C 1.37869 * 120.00120 * 181.92274 * 13 11 10 16 16 N 1.31521 * 119.99856 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00295 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47295 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.46944 * 300.00512 * 17 15 13 20 20 H 1.48502 * 109.46852 * 60.00285 * 17 15 13 21 21 C 1.47812 * 134.45726 * 359.87243 * 9 7 6 22 22 H 1.09003 * 109.46787 * 300.00093 * 1 2 3 23 23 H 1.08998 * 109.47295 * 59.99534 * 1 2 3 24 24 H 1.09002 * 109.47346 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46801 * 59.99654 * 3 2 1 26 26 H 1.09005 * 109.46552 * 300.00500 * 3 2 1 27 27 H 1.08999 * 109.47231 * 264.38853 * 5 4 3 28 28 H 1.08999 * 109.47358 * 24.39024 * 5 4 3 29 29 H 1.09007 * 109.46966 * 144.38977 * 5 4 3 30 30 H 1.08006 * 120.00156 * 352.82505 * 6 4 3 31 31 H 1.08998 * 113.76951 * 41.06449 * 10 9 7 32 32 H 1.08992 * 113.87654 * 269.67093 * 10 9 7 33 33 H 0.96696 * 114.00530 * 178.07641 * 12 11 10 34 34 H 0.97006 * 119.99604 * 179.97438 * 16 15 13 35 35 H 1.08994 * 113.76780 * 90.37297 * 21 9 7 36 36 H 1.09002 * 113.83179 * 318.91346 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.3668 2.4278 -0.0013 6 6 4.0844 -0.0143 -0.0006 7 6 5.5418 -0.1349 -0.1604 8 8 6.2107 0.8517 -0.4013 9 7 6.1357 -1.3388 -0.0399 10 6 7.5278 -1.8194 -0.1343 11 6 7.0753 -2.9859 0.7628 12 8 7.2364 -2.7332 2.1600 13 6 7.6245 -4.3243 0.3406 14 1 8.2964 -4.3907 -0.5023 15 6 7.2695 -5.4638 1.0306 16 7 6.4510 -5.3829 2.0570 17 14 7.9507 -7.1228 0.5078 18 1 7.4196 -8.1808 1.4042 19 1 7.5408 -7.4077 -0.8907 20 1 9.4331 -7.0985 0.5940 21 6 5.6535 -2.7074 0.2419 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.6887 1.8463 0.8899 26 1 1.6886 1.8463 -0.8900 27 1 4.6550 2.6699 -1.0243 28 1 3.8019 3.2578 0.4231 29 1 5.2613 2.2537 0.5967 30 1 3.4788 -0.9009 0.1168 31 1 8.2539 -1.1579 0.3382 32 1 7.8217 -2.1256 -1.1382 33 1 6.9261 -3.4517 2.7280 34 1 6.2009 -6.1848 2.5422 35 1 5.3941 -3.2745 -0.6520 36 1 4.8857 -2.7536 1.0142 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118310292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:42:29 Heat of formation + Delta-G solvation = -96.798896 kcal Electronic energy + Delta-G solvation = -19079.115115 eV Core-core repulsion = 15950.606966 eV Total energy + Delta-G solvation = -3128.508149 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.22281 -39.59509 -38.78764 -35.88821 -35.37339 -34.15115 -30.93706 -28.73863 -28.64251 -27.00807 -26.74838 -26.31896 -22.36663 -20.66544 -19.49828 -18.98711 -18.14372 -17.44236 -17.04917 -16.89484 -16.46173 -16.22993 -15.96457 -15.80962 -15.00983 -14.61713 -14.23089 -14.18060 -13.76034 -13.62238 -13.41145 -13.18239 -12.95489 -12.88178 -12.73258 -12.59658 -12.24163 -12.21750 -12.11916 -11.30932 -10.84951 -10.77437 -10.59417 -10.26729 -10.06990 -9.44777 -8.25519 -6.43325 0.34660 1.48931 1.50296 1.58156 2.02090 2.28738 2.42224 2.73267 2.96792 3.47258 3.77852 4.04742 4.12508 4.21275 4.36610 4.39111 4.47106 4.52987 4.59134 4.60831 4.67239 4.79368 4.83059 4.87091 4.89564 4.90727 5.20123 5.23969 5.42277 5.58139 5.72618 5.93065 6.23637 6.62176 6.86800 7.20183 7.30720 7.43502 8.80542 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.025732 B = 0.005177 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.858270 B = 5406.960299 C = 6138.625458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.095 3.905 4 C -0.041 4.041 5 C -0.111 4.111 6 C -0.218 4.218 7 C 0.548 3.452 8 O -0.588 6.588 9 N -0.634 5.634 10 C 0.112 3.888 11 C 0.220 3.780 12 O -0.586 6.586 13 C -0.558 4.558 14 H 0.073 0.927 15 C 0.033 3.967 16 N -0.917 5.917 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.268 1.268 20 H -0.274 1.274 21 C 0.095 3.905 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.387 0.613 34 H 0.276 0.724 35 H 0.089 0.911 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.725 8.602 -3.614 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C 0.019 3.981 4 C -0.043 4.043 5 C -0.167 4.167 6 C -0.239 4.239 7 C 0.343 3.657 8 O -0.473 6.473 9 N -0.367 5.367 10 C -0.010 4.010 11 C 0.179 3.821 12 O -0.398 6.398 13 C -0.596 4.596 14 H 0.091 0.909 15 C -0.168 4.168 16 N -0.557 5.557 17 Si 0.795 3.205 18 H -0.207 1.207 19 H -0.193 1.193 20 H -0.199 1.199 21 C -0.028 4.028 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.078 0.922 32 H 0.120 0.880 33 H 0.241 0.759 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.216 9.558 -3.822 15.224 hybrid contribution 0.002 -1.409 0.152 1.417 sum -11.214 8.149 -3.670 14.340 Atomic orbital electron populations 1.22947 0.78791 1.03833 1.01386 1.87895 1.22021 1.28201 1.95767 1.21557 0.87849 0.85321 1.03325 1.22749 0.95889 0.95025 0.90606 1.20950 0.98538 0.93956 1.03254 1.22230 0.91691 1.00196 1.09783 1.18817 0.89162 0.81228 0.76523 1.90646 1.67314 1.36545 1.52760 1.50183 1.10896 1.07089 1.68525 1.23413 0.83934 0.93656 0.99976 1.20119 0.90446 0.91675 0.79849 1.86040 1.86940 1.48668 1.18141 1.21702 1.30286 0.91491 1.16155 0.90910 1.25775 0.93866 1.02892 0.94266 1.69479 1.34445 1.31350 1.20460 0.85416 0.78606 0.78024 0.78438 1.20698 1.19255 1.19895 1.24093 1.00988 0.78227 0.99474 0.92532 0.92374 0.89158 0.88962 0.88593 0.90630 0.89100 0.91944 0.85358 0.92167 0.88038 0.75882 0.91443 0.89334 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.24 9.13 -148.98 -1.36 -11.60 16 3 C 0.10 1.93 6.32 71.24 0.45 2.38 16 4 C -0.04 -1.16 6.11 -17.62 -0.11 -1.27 16 5 C -0.11 -2.99 8.48 71.23 0.60 -2.39 16 6 C -0.22 -7.96 9.14 23.43 0.21 -7.75 16 7 C 0.55 24.05 7.85 86.57 0.68 24.73 16 8 O -0.59 -27.42 14.01 -4.05 -0.06 -27.48 16 9 N -0.63 -28.96 3.61 -843.96 -3.05 -32.01 16 10 C 0.11 5.19 8.23 86.49 0.71 5.90 16 11 C 0.22 11.03 1.40 -10.87 -0.02 11.01 16 12 O -0.59 -31.67 13.49 -148.98 -2.01 -33.68 16 13 C -0.56 -28.57 8.61 25.60 0.22 -28.35 16 14 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.03 1.64 5.39 84.65 0.46 2.09 16 16 N -0.92 -47.19 11.20 21.45 0.24 -46.95 16 17 Si 0.97 39.85 29.54 68.60 2.03 41.87 16 18 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 C 0.09 4.36 7.88 86.45 0.68 5.04 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 2.08 8.04 -2.39 -0.02 2.06 16 28 H 0.09 1.69 8.09 -2.39 -0.02 1.68 16 29 H 0.06 2.14 6.14 -2.38 -0.01 2.12 16 30 H 0.13 4.75 6.77 -2.91 -0.02 4.73 16 31 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.10 4.25 8.09 -2.39 -0.02 4.23 16 33 H 0.39 21.01 6.60 -74.06 -0.49 20.52 16 34 H 0.28 13.43 8.31 -92.70 -0.77 12.66 16 35 H 0.09 3.87 8.09 -2.39 -0.02 3.85 16 36 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 Total: -1.00 -62.76 307.65 1.53 -61.24 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.59 Total: 35.55 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.14 Total: 13.05 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.81 Total: -78.96 kcal Atomic # 8 Polarization: -69.33 SS G_CDS: -3.43 Total: -72.76 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 2.03 Total: 41.87 kcal Total: -62.76 1.53 -61.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118310292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.563 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds