Wall clock time and date at job start Sun Mar 29 2020 23:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47242 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.47063 * 30.00068 * 3 2 1 6 6 H 1.48503 * 109.47169 * 150.00452 * 3 2 1 7 7 C 1.37881 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99791 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88438 * 62.43332 * 9 7 2 11 11 C 1.55156 * 111.00618 * 298.54780 * 9 7 2 12 12 C 1.54318 * 102.94280 * 206.42055 * 11 9 7 13 13 N 1.47021 * 107.27180 * 22.19790 * 12 11 9 14 14 C 1.34779 * 125.65134 * 181.02041 * 13 12 11 15 15 O 1.21284 * 119.99836 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99616 * 0.02562 * 14 13 12 17 17 H 1.08994 * 110.90992 * 62.13759 * 16 14 13 18 18 C 1.55457 * 110.92154 * 185.75287 * 16 14 13 19 19 C 1.54947 * 100.98961 * 152.22952 * 18 16 14 20 20 O 1.43650 * 105.13275 * 323.60678 * 19 18 16 21 21 C 1.43233 * 109.97542 * 24.42908 * 20 19 18 22 22 C 1.47430 * 108.70343 * 1.28543 * 13 12 11 23 23 H 0.96997 * 120.00184 * 359.97438 * 1 2 3 24 24 H 0.96698 * 113.99660 * 297.56757 * 10 9 7 25 25 H 1.09003 * 110.71546 * 88.06299 * 11 9 7 26 26 H 1.08995 * 110.72388 * 324.79093 * 11 9 7 27 27 H 1.09002 * 109.88670 * 262.77774 * 12 11 9 28 28 H 1.09002 * 110.00985 * 141.68532 * 12 11 9 29 29 H 1.08999 * 111.05650 * 34.31564 * 18 16 14 30 30 H 1.08993 * 111.14807 * 270.18306 * 18 16 14 31 31 H 1.08996 * 110.31348 * 204.69266 * 19 18 16 32 32 H 1.09000 * 110.30898 * 82.52016 * 19 18 16 33 33 H 1.09002 * 109.83312 * 117.80151 * 21 20 19 34 34 H 1.08996 * 109.82720 * 238.68562 * 21 20 19 35 35 H 1.08992 * 110.36919 * 94.47879 * 22 13 12 36 36 H 1.08999 * 110.36627 * 216.81041 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4608 -2.6311 -1.1838 11 6 0.3740 -2.6350 1.2721 12 6 0.2588 -4.1635 1.4509 13 7 1.3945 -4.7726 0.7433 14 6 1.6420 -6.0939 0.6457 15 8 2.6137 -6.4853 0.0346 16 6 0.7112 -7.0848 1.2960 17 1 -0.2887 -7.0184 0.8673 18 6 1.2689 -8.5310 1.1769 19 6 0.6431 -9.1930 2.4303 20 8 0.6544 -8.1707 3.4394 21 6 0.6685 -6.8769 2.8251 22 6 2.2213 -3.6985 0.1635 23 1 -0.4850 0.8400 0.0004 24 1 -0.2252 -1.9559 -1.2759 25 1 -0.6083 -2.1903 1.1127 26 1 0.8686 -2.1823 2.1315 27 1 -0.6785 -4.5174 1.0216 28 1 0.3014 -4.4194 2.5096 29 1 2.3574 -8.5367 1.2317 30 1 0.9209 -9.0126 0.2632 31 1 1.2441 -10.0449 2.7481 32 1 -0.3795 -9.5072 2.2214 33 1 -0.2326 -6.3278 3.0986 34 1 1.5506 -6.3240 3.1479 35 1 3.0364 -3.4403 0.8395 36 1 2.6139 -4.0036 -0.8064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326384534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:23 Heat of formation + Delta-G solvation = -131.579366 kcal Electronic energy + Delta-G solvation = -19764.906712 eV Core-core repulsion = 16634.890369 eV Total energy + Delta-G solvation = -3130.016343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.24759 -38.60904 -37.17186 -34.38321 -32.30207 -32.26773 -30.16296 -29.26731 -28.14327 -25.29299 -23.51007 -22.35812 -21.58685 -19.79082 -18.87149 -17.28841 -17.18148 -16.46302 -15.86429 -15.15760 -14.98749 -14.88856 -14.38546 -14.07418 -13.72285 -13.35082 -13.09297 -12.46314 -12.29519 -11.91454 -11.82426 -11.54129 -11.42671 -11.36392 -11.24824 -11.00981 -10.92807 -10.65146 -10.50285 -10.08246 -9.72730 -9.48044 -9.35538 -8.72538 -8.28070 -8.07654 -6.32923 -4.41089 2.91930 3.17798 3.25281 3.27832 3.38860 3.80404 4.23526 4.29094 4.71579 4.84441 4.94342 5.04819 5.10930 5.19883 5.47534 5.55795 5.59687 5.65155 5.69408 5.78980 5.83302 5.95589 6.08088 6.23010 6.37076 6.58350 6.82563 6.83127 6.89006 7.23800 7.28638 7.68833 7.96094 8.04371 8.51557 8.62044 9.25613 9.34437 10.74549 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.045655 B = 0.005109 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.147097 B = 5479.175008 C = 5647.589227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.094 3.906 13 N -0.604 5.604 14 C 0.533 3.467 15 O -0.551 6.551 16 C -0.142 4.142 17 H 0.109 0.891 18 C -0.135 4.135 19 C 0.050 3.950 20 O -0.383 6.383 21 C 0.064 3.936 22 C 0.119 3.881 23 H 0.268 0.732 24 H 0.381 0.619 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -10.638 4.909 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.391 6.391 11 C -0.175 4.175 12 C -0.028 4.028 13 N -0.336 5.336 14 C 0.321 3.679 15 O -0.429 6.429 16 C -0.164 4.164 17 H 0.127 0.873 18 C -0.173 4.173 19 C -0.026 4.026 20 O -0.303 6.303 21 C -0.013 4.013 22 C -0.002 4.002 23 H 0.078 0.922 24 H 0.231 0.769 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.896 -11.342 4.715 12.428 hybrid contribution -0.140 1.572 -0.130 1.583 sum -2.036 -9.770 4.585 10.983 Atomic orbital electron populations 1.69710 1.05980 1.27687 1.50076 1.24982 0.95014 0.99530 0.93382 0.86416 0.79830 0.82358 0.78385 1.20386 1.21037 1.19682 1.21443 0.93754 0.90149 1.52109 0.91696 1.19649 0.86993 0.90678 0.81927 1.86136 1.51514 1.56945 1.44535 1.23186 1.03273 0.89766 1.01262 1.22307 0.88554 0.97002 0.94974 1.48622 1.27352 1.04908 1.52755 1.19676 0.85767 0.81704 0.80773 1.90664 1.30109 1.78532 1.43640 1.22872 1.00833 0.95651 0.97011 0.87305 1.23177 1.02773 0.92549 0.98799 1.23425 1.00223 0.91545 0.87410 1.88399 1.95800 1.14490 1.31574 1.23120 1.02472 0.85859 0.89810 1.22450 0.93783 0.86006 0.97979 0.92195 0.76941 0.89419 0.91222 0.92342 0.92594 0.88994 0.89451 0.89510 0.92040 0.90389 0.90795 0.90890 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.50 10.76 55.43 0.60 -21.90 16 2 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.69 8.27 -34.44 -0.28 -13.98 16 8 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 9 C 0.25 5.83 0.87 -89.50 -0.08 5.75 16 10 O -0.58 -14.50 13.17 -35.23 -0.46 -14.96 16 11 C -0.14 -2.82 5.38 -24.90 -0.13 -2.95 16 12 C 0.09 1.63 6.02 -3.07 -0.02 1.61 16 13 N -0.60 -11.62 3.32 -170.38 -0.57 -12.19 16 14 C 0.53 9.81 7.08 -10.98 -0.08 9.74 16 15 O -0.55 -11.85 16.02 5.55 0.09 -11.76 16 16 C -0.14 -1.97 2.89 -89.74 -0.26 -2.23 16 17 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.14 -1.65 6.24 -24.40 -0.15 -1.80 16 19 C 0.05 0.53 7.78 38.18 0.30 0.83 16 20 O -0.38 -5.14 11.36 -35.23 -0.40 -5.54 16 21 C 0.06 0.84 5.84 37.88 0.22 1.06 16 22 C 0.12 2.62 6.10 -2.40 -0.01 2.60 16 23 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 24 H 0.38 9.41 7.56 45.56 0.34 9.75 16 25 H 0.09 1.90 7.55 -51.93 -0.39 1.50 16 26 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.82 6.39 -51.93 -0.33 0.49 16 29 H 0.09 1.27 7.47 -51.93 -0.39 0.88 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.90 7.35 -51.93 -0.38 0.52 16 34 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 35 H 0.07 1.56 8.03 -51.93 -0.42 1.14 16 36 H 0.07 1.66 8.03 -51.93 -0.42 1.25 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -28.41 292.29 -6.42 -34.83 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -4.46 Total: 9.90 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.60 Total: 2.39 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.03 Total: -34.09 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.78 Total: -32.27 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.41 -6.42 -34.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.751 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds