Wall clock time and date at job start Sun Mar 29 2020 23:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99901 * 2 1 4 4 H 1.48503 * 109.47242 * 270.00110 * 3 2 1 5 5 H 1.48501 * 109.47063 * 30.00068 * 3 2 1 6 6 H 1.48503 * 109.47169 * 150.00452 * 3 2 1 7 7 C 1.37881 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00243 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99791 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.88438 * 62.43332 * 9 7 2 11 11 C 1.55156 * 111.00618 * 298.54780 * 9 7 2 12 12 C 1.54318 * 102.94280 * 206.42055 * 11 9 7 13 13 N 1.47021 * 107.27180 * 22.19790 * 12 11 9 14 14 C 1.34779 * 125.65134 * 181.02041 * 13 12 11 15 15 O 1.21284 * 119.99836 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99616 * 0.02562 * 14 13 12 17 17 H 1.08994 * 110.90992 * 62.13759 * 16 14 13 18 18 C 1.55457 * 110.92154 * 185.75287 * 16 14 13 19 19 C 1.54947 * 100.98961 * 152.22952 * 18 16 14 20 20 O 1.43650 * 105.13275 * 323.60678 * 19 18 16 21 21 C 1.43233 * 109.97542 * 24.42908 * 20 19 18 22 22 C 1.47430 * 108.70343 * 1.28543 * 13 12 11 23 23 H 0.96997 * 120.00184 * 359.97438 * 1 2 3 24 24 H 0.96698 * 113.99660 * 297.56757 * 10 9 7 25 25 H 1.09003 * 110.71546 * 88.06299 * 11 9 7 26 26 H 1.08995 * 110.72388 * 324.79093 * 11 9 7 27 27 H 1.09002 * 109.88670 * 262.77774 * 12 11 9 28 28 H 1.09002 * 110.00985 * 141.68532 * 12 11 9 29 29 H 1.08999 * 111.05650 * 34.31564 * 18 16 14 30 30 H 1.08993 * 111.14807 * 270.18306 * 18 16 14 31 31 H 1.08996 * 110.31348 * 204.69266 * 19 18 16 32 32 H 1.09000 * 110.30898 * 82.52016 * 19 18 16 33 33 H 1.09002 * 109.83312 * 117.80151 * 21 20 19 34 34 H 1.08996 * 109.82720 * 238.68562 * 21 20 19 35 35 H 1.08992 * 110.36919 * 94.47879 * 22 13 12 36 36 H 1.08999 * 110.36627 * 216.81041 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 0.4608 -2.6311 -1.1838 11 6 0.3740 -2.6350 1.2721 12 6 0.2588 -4.1635 1.4509 13 7 1.3945 -4.7726 0.7433 14 6 1.6420 -6.0939 0.6457 15 8 2.6137 -6.4853 0.0346 16 6 0.7112 -7.0848 1.2960 17 1 -0.2887 -7.0184 0.8673 18 6 1.2689 -8.5310 1.1769 19 6 0.6431 -9.1930 2.4303 20 8 0.6544 -8.1707 3.4394 21 6 0.6685 -6.8769 2.8251 22 6 2.2213 -3.6985 0.1635 23 1 -0.4850 0.8400 0.0004 24 1 -0.2252 -1.9559 -1.2759 25 1 -0.6083 -2.1903 1.1127 26 1 0.8686 -2.1823 2.1315 27 1 -0.6785 -4.5174 1.0216 28 1 0.3014 -4.4194 2.5096 29 1 2.3574 -8.5367 1.2317 30 1 0.9209 -9.0126 0.2632 31 1 1.2441 -10.0449 2.7481 32 1 -0.3795 -9.5072 2.2214 33 1 -0.2326 -6.3278 3.0986 34 1 1.5506 -6.3240 3.1479 35 1 3.0364 -3.4403 0.8395 36 1 2.6139 -4.0036 -0.8064 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326384534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:23 Heat of formation + Delta-G solvation = -152.647146 kcal Electronic energy + Delta-G solvation = -19765.820279 eV Core-core repulsion = 16634.890369 eV Total energy + Delta-G solvation = -3130.929911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56063 -39.90232 -38.76234 -36.13395 -34.22308 -33.42512 -31.62277 -30.54254 -29.69682 -27.06793 -24.88415 -23.41914 -22.86016 -21.55285 -20.28407 -19.08017 -18.52792 -17.58809 -17.18639 -16.90671 -16.48117 -16.29039 -15.91271 -15.29715 -15.29030 -14.79773 -14.32240 -14.05300 -13.82726 -13.55764 -13.23946 -13.14399 -13.03859 -12.66935 -12.59749 -12.37549 -12.31551 -12.25097 -11.96843 -11.84804 -11.28740 -11.01810 -10.64501 -10.51160 -10.16257 -9.63124 -8.24593 -6.39316 1.41996 1.45529 1.49281 1.53812 1.95100 2.39973 2.83679 3.00714 3.23116 3.53695 3.77898 3.86867 3.98313 4.08239 4.14408 4.28851 4.32857 4.34279 4.57616 4.60606 4.71302 4.74786 4.83071 4.87701 4.91376 5.11093 5.15238 5.25194 5.44275 5.53998 5.76742 5.92161 6.07722 6.55200 6.64563 7.04359 7.30780 7.39257 8.81259 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.045655 B = 0.005109 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.147097 B = 5479.175008 C = 5647.589227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.053 0.947 9 C 0.234 3.766 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.102 3.898 13 N -0.608 5.608 14 C 0.528 3.472 15 O -0.589 6.589 16 C -0.136 4.136 17 H 0.133 0.867 18 C -0.135 4.135 19 C 0.053 3.947 20 O -0.399 6.399 21 C 0.068 3.932 22 C 0.124 3.876 23 H 0.271 0.729 24 H 0.378 0.622 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -11.452 5.998 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.162 4.162 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.194 3.806 10 O -0.401 6.401 11 C -0.166 4.166 12 C -0.020 4.020 13 N -0.339 5.339 14 C 0.318 3.682 15 O -0.470 6.470 16 C -0.157 4.157 17 H 0.151 0.849 18 C -0.173 4.173 19 C -0.023 4.023 20 O -0.319 6.319 21 C -0.009 4.009 22 C 0.001 3.999 23 H 0.081 0.919 24 H 0.228 0.772 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.195 -12.169 5.821 13.863 hybrid contribution 0.291 1.811 -0.513 1.905 sum -2.904 -10.358 5.308 11.995 Atomic orbital electron populations 1.69764 1.06554 1.28384 1.49664 1.25559 0.95826 1.01846 0.92964 0.85568 0.78795 0.79234 0.78066 1.20628 1.20209 1.19735 1.21670 0.93546 0.91731 1.53267 0.92871 1.19803 0.87631 0.90493 0.82626 1.86122 1.51581 1.56808 1.45632 1.22966 1.01811 0.92445 0.99345 1.22346 0.88498 0.94254 0.96915 1.48688 1.27479 1.04936 1.52842 1.20538 0.85874 0.81729 0.80073 1.90644 1.32000 1.79051 1.45350 1.22921 1.00575 0.94829 0.97392 0.84924 1.23196 1.01556 0.91930 1.00592 1.23601 1.01820 0.91097 0.85790 1.88385 1.95961 1.14919 1.32597 1.23100 1.02870 0.86131 0.88812 1.22199 0.94001 0.86706 0.97001 0.91921 0.77236 0.90379 0.91852 0.90416 0.89212 0.91221 0.87941 0.87934 0.89579 0.88240 0.92237 0.90957 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.17 10.76 21.45 0.23 -44.94 16 2 C 0.04 2.00 5.29 84.66 0.45 2.44 16 3 Si 0.96 40.57 29.54 68.60 2.03 42.60 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -29.24 8.27 25.60 0.21 -29.03 16 8 H 0.05 2.80 7.79 -2.91 -0.02 2.77 16 9 C 0.23 11.14 0.87 -10.07 -0.01 11.13 16 10 O -0.59 -29.84 13.17 -148.98 -1.96 -31.80 16 11 C -0.13 -5.16 5.38 31.78 0.17 -4.99 16 12 C 0.10 3.28 6.02 86.73 0.52 3.80 16 13 N -0.61 -22.89 3.32 -811.34 -2.70 -25.59 16 14 C 0.53 18.98 7.08 87.66 0.62 19.60 16 15 O -0.59 -25.62 16.02 -3.04 -0.05 -25.66 16 16 C -0.14 -3.42 2.89 -10.23 -0.03 -3.45 16 17 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.13 -2.99 6.24 32.11 0.20 -2.79 16 19 C 0.05 0.94 7.78 72.65 0.57 1.51 16 20 O -0.40 -9.50 11.36 -148.98 -1.69 -11.19 16 21 C 0.07 1.57 5.84 72.45 0.42 2.00 16 22 C 0.12 5.54 6.10 86.93 0.53 6.07 16 23 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16 24 H 0.38 18.92 7.56 -74.06 -0.56 18.36 16 25 H 0.08 3.31 7.55 -2.39 -0.02 3.30 16 26 H 0.06 2.61 8.03 -2.39 -0.02 2.60 16 27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.09 2.33 6.39 -2.39 -0.02 2.31 16 29 H 0.07 1.87 7.47 -2.39 -0.02 1.85 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.10 1.89 7.35 -2.39 -0.02 1.87 16 34 H 0.06 1.55 7.80 -2.39 -0.02 1.53 16 35 H 0.07 3.18 8.03 -2.39 -0.02 3.16 16 36 H 0.05 2.23 8.03 -2.39 -0.02 2.22 16 Total: -1.00 -61.32 292.29 0.04 -61.29 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.53 Total: 29.02 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 3.65 Total: 6.28 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -2.47 Total: -70.53 kcal Atomic # 8 Polarization: -64.96 SS G_CDS: -3.70 Total: -68.66 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -61.32 0.04 -61.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326384534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.359 kcal (2) G-P(sol) polarization free energy of solvation -61.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds