Wall clock time and date at job start Sun Mar 29 2020 23:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47318 * 269.99641 * 3 2 1 5 5 H 1.48503 * 109.47300 * 29.99761 * 3 2 1 6 6 H 1.48506 * 109.47536 * 149.99512 * 3 2 1 7 7 C 1.37872 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46875 * 180.02562 * 10 9 7 12 12 O 1.20818 * 120.00001 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99508 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99570 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46844 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.67553 * 54.49804 * 15 14 13 17 17 C 1.53347 * 109.67129 * 174.99641 * 15 14 13 18 18 C 1.52918 * 108.67079 * 187.26079 * 17 15 14 19 19 N 1.45755 * 110.49264 * 309.24474 * 18 17 15 20 20 C 1.33356 * 124.10311 * 19.36364 * 19 18 17 21 21 O 1.21280 * 118.24518 * 177.49459 * 20 19 18 22 22 C 1.50192 * 123.49312 * 357.20960 * 20 19 18 23 23 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46596 * 59.99574 * 9 7 2 25 25 H 1.09005 * 109.46895 * 300.00021 * 9 7 2 26 26 H 1.08995 * 109.47143 * 60.00287 * 10 9 7 27 27 H 1.09005 * 109.47104 * 299.99868 * 10 9 7 28 28 H 1.08998 * 109.47391 * 59.99656 * 14 13 11 29 29 H 1.08995 * 109.46739 * 299.98909 * 14 13 11 30 30 H 1.09004 * 109.60260 * 67.50657 * 17 15 14 31 31 H 1.08997 * 109.60534 * 307.01939 * 17 15 14 32 32 H 1.09010 * 109.29931 * 188.93365 * 18 17 15 33 33 H 1.09002 * 109.30404 * 69.56509 * 18 17 15 34 34 H 0.97001 * 117.94686 * 199.07122 * 19 18 17 35 35 H 1.09003 * 109.60092 * 257.85826 * 22 20 19 36 36 H 1.09002 * 109.26131 * 138.07862 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0003 13 8 2.1630 -6.1296 0.0026 14 6 1.3722 -7.3474 0.0013 15 6 2.3043 -8.5607 0.0026 16 1 2.9992 -8.4887 0.8393 17 6 1.4778 -9.8464 0.1272 18 6 2.4330 -11.0267 0.3090 19 7 3.4666 -11.0095 -0.7185 20 6 3.7904 -9.9327 -1.4355 21 8 4.7002 -10.0258 -2.2320 22 6 3.0844 -8.6127 -1.3133 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 0.7450 -7.3724 -0.8898 29 1 0.7419 -7.3721 0.8902 30 1 0.8867 -9.9902 -0.7772 31 1 0.8171 -9.7742 0.9911 32 1 1.8715 -11.9585 0.2397 33 1 2.9006 -10.9638 1.2916 34 1 3.9521 -11.8318 -0.8887 35 1 2.3948 -8.4882 -2.1482 36 1 3.8201 -7.8085 -1.3301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343719514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:51 Heat of formation + Delta-G solvation = -150.010659 kcal Electronic energy + Delta-G solvation = -18386.627805 eV Core-core repulsion = 15255.812220 eV Total energy + Delta-G solvation = -3130.815584 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.64776 -39.86856 -37.21772 -36.05474 -33.82572 -33.58781 -31.15547 -29.99192 -27.81145 -25.85971 -24.04081 -22.30174 -21.53879 -19.89838 -19.49860 -17.66743 -17.36224 -16.62945 -16.39002 -15.91550 -15.81404 -15.25943 -14.64908 -14.55221 -14.43178 -13.73160 -13.46838 -13.37542 -12.45486 -12.32110 -12.25006 -12.02653 -11.77003 -11.33776 -11.25999 -11.12882 -10.96474 -10.64939 -10.41982 -10.06557 -10.01581 -9.93180 -9.55914 -9.43263 -9.18788 -8.38646 -6.02527 -4.07433 2.40899 2.79415 2.93702 3.03467 3.31483 3.37792 3.40786 4.17177 4.26557 4.34551 4.37905 4.45688 4.88241 4.94049 4.97599 5.17859 5.29323 5.33026 5.33307 5.37761 5.45323 5.57817 5.74468 5.87934 6.10785 6.18603 6.44454 6.62071 6.90436 7.00544 7.65165 7.71720 7.94400 7.96759 8.23425 8.38986 8.99706 9.56823 11.08484 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.045261 B = 0.003342 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.487036 B = 8375.173537 C = 8815.783148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.104 4.104 11 C 0.457 3.543 12 O -0.506 6.506 13 O -0.366 6.366 14 C 0.069 3.931 15 C -0.090 4.090 16 H 0.092 0.908 17 C -0.132 4.132 18 C 0.113 3.887 19 N -0.724 5.724 20 C 0.522 3.478 21 O -0.557 6.557 22 C -0.131 4.131 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.398 0.602 35 H 0.102 0.898 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -22.374 1.936 22.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.284 6.284 14 C -0.005 4.005 15 C -0.109 4.109 16 H 0.110 0.890 17 C -0.170 4.170 18 C -0.011 4.011 19 N -0.377 5.377 20 C 0.309 3.691 21 O -0.436 6.436 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.233 0.767 35 H 0.120 0.880 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.444 -22.110 1.571 22.432 hybrid contribution 0.303 0.485 0.040 0.573 sum 3.747 -21.625 1.612 22.006 Atomic orbital electron populations 1.69991 1.06099 1.26773 1.49956 1.25020 0.94861 0.99353 0.95102 0.86539 0.79766 0.83197 0.78155 1.20585 1.21197 1.19773 1.21160 0.93095 0.90646 1.51789 0.92286 1.19021 0.93231 0.89314 0.98871 1.21774 1.00684 0.87638 1.04051 1.24775 0.87925 0.85642 0.71556 1.90635 1.15917 1.87677 1.45009 1.86556 1.42014 1.14903 1.84902 1.22927 0.93071 0.81698 1.02844 1.21304 0.97635 0.93159 0.98781 0.89000 1.21891 0.97924 0.92918 1.04290 1.21356 0.89280 0.99330 0.91175 1.45509 1.39378 1.13405 1.39380 1.20270 0.83177 0.86021 0.79588 1.90770 1.30761 1.84845 1.37188 1.21744 1.01286 0.95016 0.98970 0.92845 0.95595 0.95610 0.88933 0.88901 0.91188 0.90984 0.90327 0.89062 0.90208 0.91341 0.76664 0.87952 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 10 C -0.10 -2.08 5.75 -27.88 -0.16 -2.24 16 11 C 0.46 8.67 7.96 36.01 0.29 8.96 16 12 O -0.51 -11.15 15.73 -18.74 -0.29 -11.44 16 13 O -0.37 -5.55 10.02 -39.25 -0.39 -5.94 16 14 C 0.07 0.79 4.85 37.16 0.18 0.97 16 15 C -0.09 -0.76 2.50 -90.40 -0.23 -0.98 16 16 H 0.09 0.77 8.13 -51.93 -0.42 0.34 16 17 C -0.13 -0.73 5.32 -26.59 -0.14 -0.87 16 18 C 0.11 0.52 7.17 -4.49 -0.03 0.49 16 19 N -0.72 -5.37 5.45 -61.38 -0.33 -5.70 16 20 C 0.52 5.72 7.71 -11.86 -0.09 5.63 16 21 O -0.56 -8.58 17.78 5.56 0.10 -8.48 16 22 C -0.13 -1.29 5.17 -28.09 -0.15 -1.43 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 24 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 27 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 29 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.40 2.55 8.80 -40.82 -0.36 2.19 16 35 H 0.10 0.96 8.06 -51.93 -0.42 0.54 16 36 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 308.81 15.07 4.65 4.65 Total: -1.00 -34.91 308.81 -6.80 -41.71 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.38 Total: -2.80 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.86 Total: -2.20 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.40 Total: -31.87 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.59 Total: -25.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.91 -6.80 -41.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343719514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.304 kcal (2) G-P(sol) polarization free energy of solvation -34.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds