Wall clock time and date at job start Sun Mar 29 2020 23:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47318 * 269.99641 * 3 2 1 5 5 H 1.48503 * 109.47300 * 29.99761 * 3 2 1 6 6 H 1.48506 * 109.47536 * 149.99512 * 3 2 1 7 7 C 1.37872 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00190 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.46875 * 180.02562 * 10 9 7 12 12 O 1.20818 * 120.00001 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99508 * 180.02562 * 11 10 9 14 14 C 1.45205 * 116.99570 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46844 * 179.97438 * 14 13 11 16 16 H 1.09000 * 109.67553 * 54.49804 * 15 14 13 17 17 C 1.53347 * 109.67129 * 174.99641 * 15 14 13 18 18 C 1.52918 * 108.67079 * 187.26079 * 17 15 14 19 19 N 1.45755 * 110.49264 * 309.24474 * 18 17 15 20 20 C 1.33356 * 124.10311 * 19.36364 * 19 18 17 21 21 O 1.21280 * 118.24518 * 177.49459 * 20 19 18 22 22 C 1.50192 * 123.49312 * 357.20960 * 20 19 18 23 23 H 0.96998 * 120.00189 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46596 * 59.99574 * 9 7 2 25 25 H 1.09005 * 109.46895 * 300.00021 * 9 7 2 26 26 H 1.08995 * 109.47143 * 60.00287 * 10 9 7 27 27 H 1.09005 * 109.47104 * 299.99868 * 10 9 7 28 28 H 1.08998 * 109.47391 * 59.99656 * 14 13 11 29 29 H 1.08995 * 109.46739 * 299.98909 * 14 13 11 30 30 H 1.09004 * 109.60260 * 67.50657 * 17 15 14 31 31 H 1.08997 * 109.60534 * 307.01939 * 17 15 14 32 32 H 1.09010 * 109.29931 * 188.93365 * 18 17 15 33 33 H 1.09002 * 109.30404 * 69.56509 * 18 17 15 34 34 H 0.97001 * 117.94686 * 199.07122 * 19 18 17 35 35 H 1.09003 * 109.60092 * 257.85826 * 22 20 19 36 36 H 1.09002 * 109.26131 * 138.07862 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 8 0.2836 -4.9672 0.0003 13 8 2.1630 -6.1296 0.0026 14 6 1.3722 -7.3474 0.0013 15 6 2.3043 -8.5607 0.0026 16 1 2.9992 -8.4887 0.8393 17 6 1.4778 -9.8464 0.1272 18 6 2.4330 -11.0267 0.3090 19 7 3.4666 -11.0095 -0.7185 20 6 3.7904 -9.9327 -1.4355 21 8 4.7002 -10.0258 -2.2320 22 6 3.0844 -8.6127 -1.3133 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8713 -3.6039 0.8922 27 1 2.8727 -3.6047 -0.8877 28 1 0.7450 -7.3724 -0.8898 29 1 0.7419 -7.3721 0.8902 30 1 0.8867 -9.9902 -0.7772 31 1 0.8171 -9.7742 0.9911 32 1 1.8715 -11.9585 0.2397 33 1 2.9006 -10.9638 1.2916 34 1 3.9521 -11.8318 -0.8887 35 1 2.3948 -8.4882 -2.1482 36 1 3.8201 -7.8085 -1.3301 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343719514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:50 Heat of formation + Delta-G solvation = -174.373552 kcal Electronic energy + Delta-G solvation = -18387.684259 eV Core-core repulsion = 15255.812220 eV Total energy + Delta-G solvation = -3131.872038 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63287 -41.10085 -38.24015 -37.20537 -35.63475 -34.62087 -33.10534 -30.63872 -28.96933 -27.58799 -24.84660 -23.89720 -22.46971 -21.44211 -20.20807 -19.04629 -18.37579 -18.11803 -17.69177 -17.04473 -16.95732 -16.47809 -16.33186 -15.62849 -15.16290 -14.81890 -14.62832 -14.37377 -14.21405 -13.71668 -13.55617 -13.11027 -12.83400 -12.77891 -12.55066 -12.42548 -12.05519 -11.98510 -11.91829 -11.73537 -11.53444 -11.40211 -11.24258 -10.86374 -10.57072 -10.06826 -8.19592 -6.33106 1.27210 1.43908 1.46003 1.56571 1.57171 1.74037 2.34428 2.43771 3.14296 3.42792 3.57116 3.68976 3.80598 4.05610 4.25799 4.31138 4.38741 4.45999 4.47366 4.51232 4.54580 4.76745 4.84756 4.91601 4.96294 5.04616 5.25098 5.41929 5.49109 5.56870 5.81607 5.84373 6.14350 6.30583 6.81547 6.88884 7.18354 7.37167 8.92977 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.045261 B = 0.003342 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.487036 B = 8375.173537 C = 8815.783148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.038 3.962 10 C -0.097 4.097 11 C 0.467 3.533 12 O -0.544 6.544 13 O -0.357 6.357 14 C 0.062 3.938 15 C -0.079 4.079 16 H 0.097 0.903 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.712 5.712 20 C 0.520 3.480 21 O -0.612 6.612 22 C -0.131 4.131 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.405 0.595 35 H 0.105 0.895 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -23.482 2.855 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.001 3.999 10 C -0.134 4.134 11 C 0.312 3.688 12 O -0.434 6.434 13 O -0.274 6.274 14 C -0.012 4.012 15 C -0.097 4.097 16 H 0.116 0.884 17 C -0.167 4.167 18 C -0.013 4.013 19 N -0.362 5.362 20 C 0.308 3.692 21 O -0.494 6.494 22 C -0.170 4.170 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.133 0.867 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.549 -23.276 2.526 23.850 hybrid contribution -0.086 0.703 -0.216 0.740 sum 4.463 -22.573 2.310 23.126 Atomic orbital electron populations 1.70151 1.08169 1.27918 1.51266 1.26079 0.95734 1.03798 0.94540 0.85329 0.78692 0.77794 0.78495 1.19813 1.21116 1.18011 1.21658 0.94095 0.91400 1.51095 0.90560 1.18798 0.93693 0.91937 0.95491 1.21511 0.99366 0.86406 1.06138 1.24380 0.87075 0.86540 0.70765 1.90627 1.17431 1.88352 1.46969 1.86516 1.41884 1.14992 1.83963 1.23320 0.93796 0.80827 1.03243 1.21289 0.97363 0.93099 0.97968 0.88427 1.21940 0.97971 0.91308 1.05470 1.21641 0.88651 1.00220 0.90792 1.45522 1.39340 1.12598 1.38750 1.20383 0.82554 0.86913 0.79330 1.90745 1.33199 1.85742 1.39756 1.21707 1.01039 0.94223 1.00065 0.92749 0.99195 0.99034 0.86661 0.86877 0.91284 0.90222 0.90087 0.86968 0.87183 0.89674 0.75932 0.87729 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.04 2.05 4.26 29.85 0.13 2.17 16 10 C -0.10 -3.84 5.75 29.85 0.17 -3.67 16 11 C 0.47 17.63 7.96 71.24 0.57 18.20 16 12 O -0.54 -24.44 15.73 21.99 0.35 -24.10 16 13 O -0.36 -10.42 10.02 -51.38 -0.51 -10.93 16 14 C 0.06 1.33 4.85 71.98 0.35 1.68 16 15 C -0.08 -1.15 2.50 -10.65 -0.03 -1.18 16 16 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 17 C -0.13 -1.00 5.32 30.68 0.16 -0.84 16 18 C 0.11 0.59 7.17 86.49 0.62 1.21 16 19 N -0.71 -8.96 5.45 -467.28 -2.55 -11.51 16 20 C 0.52 10.98 7.71 87.72 0.68 11.66 16 21 O -0.61 -19.06 17.78 -3.03 -0.05 -19.11 16 22 C -0.13 -2.47 5.17 29.71 0.15 -2.32 16 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 24 H -0.01 -0.62 8.10 -2.38 -0.02 -0.64 16 25 H -0.01 -0.52 8.10 -2.38 -0.02 -0.54 16 26 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.11 4.03 8.14 -2.38 -0.02 4.01 16 28 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.08 1.64 8.13 -2.39 -0.02 1.63 16 30 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.40 4.36 8.80 -92.71 -0.82 3.54 16 35 H 0.10 1.91 8.06 -2.39 -0.02 1.89 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -78.32 308.81 3.30 -75.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.26 Total: 5.52 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 3.50 Total: -2.96 kcal Atomic # 7 Polarization: -66.88 SS G_CDS: -2.26 Total: -69.14 kcal Atomic # 8 Polarization: -53.92 SS G_CDS: -0.22 Total: -54.14 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -78.32 3.30 -75.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343719514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.350 kcal (2) G-P(sol) polarization free energy of solvation -78.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds