Wall clock time and date at job start Sun Mar 29 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.47405 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43168 * 307.53726 * 17 16 14 19 19 C 1.54628 * 110.48517 * 184.99695 * 17 16 14 20 20 C 1.54481 * 101.76510 * 216.52115 * 19 17 16 21 21 N 1.46765 * 105.47084 * 25.41487 * 20 19 17 22 22 C 1.34415 * 111.30312 * 342.98925 * 21 20 19 23 23 O 1.21287 * 124.94526 * 180.44295 * 22 21 20 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 31 31 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 32 32 H 1.08997 * 110.97154 * 334.64296 * 19 17 16 33 33 H 1.08999 * 110.96795 * 98.36766 * 19 17 16 34 34 H 1.09000 * 110.24510 * 144.41855 * 20 19 17 35 35 H 1.09006 * 110.24733 * 266.42231 * 20 19 17 36 36 H 0.97004 * 124.34792 * 162.97897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 -1.3618 4.0582 -2.2597 18 1 -2.0569 3.3211 -1.8576 19 6 -1.9189 4.6718 -3.5651 20 6 -2.6298 5.9386 -3.0395 21 7 -1.9492 6.2769 -1.7839 22 6 -1.2341 5.2373 -1.3206 23 8 -0.5821 5.2434 -0.2979 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 0.7239 4.1957 -2.7823 31 1 -0.0720 2.6967 -3.3193 32 1 -1.1114 4.9330 -4.2490 33 1 -2.6281 3.9955 -4.0424 34 1 -2.5268 6.7536 -3.7559 35 1 -3.6833 5.7301 -2.8530 36 1 -2.0078 7.1400 -1.3450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514886461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:17 Heat of formation + Delta-G solvation = -133.170273 kcal Electronic energy + Delta-G solvation = -19571.591376 eV Core-core repulsion = 16441.506046 eV Total energy + Delta-G solvation = -3130.085330 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51261 -39.10350 -36.23262 -35.66345 -33.37908 -32.89287 -31.24898 -29.12099 -27.26225 -25.85737 -23.10305 -22.02562 -21.09064 -19.73338 -19.07269 -17.34172 -16.88911 -16.62373 -16.36205 -15.30606 -15.09407 -14.70763 -14.28124 -13.82521 -13.59527 -13.05731 -12.83749 -12.70544 -12.57822 -12.15400 -11.65856 -11.60239 -11.30869 -11.21109 -11.02439 -11.00138 -10.86787 -10.53920 -10.18061 -9.70481 -9.56219 -9.36149 -9.17797 -9.10489 -8.66511 -8.35219 -6.09162 -4.15248 2.79087 3.27076 3.29367 3.34327 3.36057 3.41210 3.77246 4.27769 4.34624 4.43950 4.63714 4.95588 5.12219 5.22606 5.27548 5.33854 5.50595 5.63955 5.73344 5.99832 6.03963 6.30750 6.37956 6.55434 6.83918 6.96889 7.02979 7.09762 7.28000 7.41049 7.72495 7.86975 8.10961 8.29044 8.42206 8.80295 9.06326 9.49688 10.97848 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.034563 B = 0.005207 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.930842 B = 5376.266311 C = 5641.820171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.061 3.939 8 N -0.888 5.888 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.361 6.361 14 C 0.446 3.554 15 O -0.495 6.495 16 C -0.100 4.100 17 C -0.112 4.112 18 H 0.117 0.883 19 C -0.130 4.130 20 C 0.104 3.896 21 N -0.744 5.744 22 C 0.516 3.484 23 O -0.494 6.494 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.264 0.736 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 8.033 -13.261 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.065 0.935 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.278 6.278 14 C 0.288 3.712 15 O -0.383 6.383 16 C -0.138 4.138 17 C -0.134 4.134 18 H 0.135 0.865 19 C -0.168 4.168 20 C -0.021 4.021 21 N -0.402 5.402 22 C 0.301 3.699 23 O -0.366 6.366 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -11.623 7.785 -12.238 18.587 hybrid contribution 0.740 0.333 0.384 0.898 sum -10.883 8.118 -11.855 18.024 Atomic orbital electron populations 1.21849 0.98447 0.98756 1.00776 1.22006 0.92602 0.99515 1.03174 1.20610 0.94848 0.88604 0.79028 0.93469 1.21101 0.89897 1.38479 1.06099 0.91422 1.24885 0.99112 0.94929 0.95107 1.69913 1.35156 1.38135 1.09465 0.86254 0.84143 0.77761 0.78176 1.19534 1.20808 1.20783 1.86432 1.34630 1.62833 1.43938 1.22957 0.81274 0.77474 0.89526 1.90639 1.55448 1.56983 1.35240 1.21162 0.95571 1.00795 0.96291 1.21791 0.98537 0.97385 0.95666 0.86482 1.22709 1.01069 0.96474 0.96556 1.21988 0.96504 0.97791 0.85805 1.46243 1.51537 1.15791 1.26609 1.20762 0.78568 0.84750 0.85847 1.90877 1.39842 1.82039 1.23841 0.92821 0.94965 0.95005 0.94122 0.87479 0.92570 0.88318 0.87515 0.89562 0.88925 0.90463 0.91290 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.57 37.16 0.32 -2.87 16 2 C -0.13 -3.48 5.49 -26.73 -0.15 -3.62 16 3 C 0.22 6.20 2.25 -27.88 -0.06 6.14 16 4 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 5 C -0.52 -15.14 8.90 -34.44 -0.31 -15.45 16 6 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -26.07 11.30 55.43 0.63 -25.44 16 9 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 O -0.36 -8.99 9.81 -39.26 -0.39 -9.38 16 14 C 0.45 9.66 5.88 36.00 0.21 9.88 16 15 O -0.50 -12.10 11.19 -25.90 -0.29 -12.39 16 16 C -0.10 -1.46 5.20 -27.88 -0.14 -1.60 16 17 C -0.11 -1.41 2.54 -90.63 -0.23 -1.64 16 18 H 0.12 1.54 7.90 -51.93 -0.41 1.13 16 19 C -0.13 -0.93 6.70 -25.10 -0.17 -1.10 16 20 C 0.10 0.69 7.78 -3.12 -0.02 0.67 16 21 N -0.74 -7.85 6.24 -59.20 -0.37 -8.22 16 22 C 0.52 8.04 7.70 -10.86 -0.08 7.95 16 23 O -0.49 -10.72 15.63 -15.86 -0.25 -10.97 16 24 H 0.05 1.29 7.80 -51.93 -0.40 0.89 16 25 H 0.03 0.68 6.06 -51.93 -0.31 0.37 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 1.35 8.12 -51.93 -0.42 0.93 16 31 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.09 0.53 7.91 -51.93 -0.41 0.12 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.41 3.72 8.96 -40.82 -0.37 3.35 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -36.03 296.15 -7.05 -43.08 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.09 Total: 2.08 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.73 Total: 0.01 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: 0.26 Total: -33.67 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.92 Total: -32.73 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -36.03 -7.05 -43.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514886461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.090 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds