Wall clock time and date at job start Sun Mar 29 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 O 1.45198 * 109.46884 * 294.99515 * 3 2 1 14 14 C 1.34232 * 116.99973 * 90.00459 * 13 3 2 15 15 O 1.20828 * 120.00187 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00321 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.47405 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.43168 * 307.53726 * 17 16 14 19 19 C 1.54628 * 110.48517 * 184.99695 * 17 16 14 20 20 C 1.54481 * 101.76510 * 216.52115 * 19 17 16 21 21 N 1.46765 * 105.47084 * 25.41487 * 20 19 17 22 22 C 1.34415 * 111.30312 * 342.98925 * 21 20 19 23 23 O 1.21287 * 124.94526 * 180.44295 * 22 21 20 24 24 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 25 25 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 26 26 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 30 30 H 1.09006 * 109.47040 * 299.99732 * 16 14 13 31 31 H 1.09005 * 109.47258 * 59.99528 * 16 14 13 32 32 H 1.08997 * 110.97154 * 334.64296 * 19 17 16 33 33 H 1.08999 * 110.96795 * 98.36766 * 19 17 16 34 34 H 1.09000 * 110.24510 * 144.41855 * 20 19 17 35 35 H 1.09006 * 110.24733 * 266.42231 * 20 19 17 36 36 H 0.97004 * 124.34792 * 162.97897 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6559 2.0916 -1.2407 14 6 0.4727 2.7254 -1.2561 15 8 -0.2193 2.7370 -0.2657 16 6 0.0069 3.4214 -2.5089 17 6 -1.3618 4.0582 -2.2597 18 1 -2.0569 3.3211 -1.8576 19 6 -1.9189 4.6718 -3.5651 20 6 -2.6298 5.9386 -3.0395 21 7 -1.9492 6.2769 -1.7839 22 6 -1.2341 5.2373 -1.3206 23 8 -0.5821 5.2434 -0.2979 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8293 -0.0608 2.9500 30 1 0.7239 4.1957 -2.7823 31 1 -0.0720 2.6967 -3.3193 32 1 -1.1114 4.9330 -4.2490 33 1 -2.6281 3.9955 -4.0424 34 1 -2.5268 6.7536 -3.7559 35 1 -3.6833 5.7301 -2.8530 36 1 -2.0078 7.1400 -1.3450 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514886461.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:17 Heat of formation + Delta-G solvation = -159.409123 kcal Electronic energy + Delta-G solvation = -19572.729178 eV Core-core repulsion = 16441.506046 eV Total energy + Delta-G solvation = -3131.223132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73744 -40.72044 -37.56154 -37.35296 -35.45359 -34.04351 -33.27686 -30.09548 -29.22587 -27.04917 -25.14825 -22.78731 -22.72139 -21.41719 -20.50483 -18.86370 -18.47885 -18.08563 -17.79115 -17.10818 -16.70322 -16.27935 -15.68250 -15.01434 -14.79693 -14.64980 -14.55570 -14.05206 -13.60558 -13.39535 -13.32167 -13.18796 -13.10538 -12.85247 -12.73157 -12.55823 -12.35481 -12.12091 -11.86413 -11.74048 -11.38497 -11.13165 -10.78296 -10.68689 -10.50171 -9.99540 -8.27428 -6.44442 1.39127 1.40911 1.54293 1.59539 1.63296 2.14983 2.44357 2.50199 3.01720 3.43464 3.52811 3.86536 4.03847 4.29604 4.37959 4.41398 4.43323 4.47986 4.56345 4.66034 4.83953 4.84728 4.87397 5.09469 5.14591 5.24663 5.27490 5.43433 5.53051 5.70186 5.98722 6.02951 6.08458 6.24016 6.62570 7.13002 7.30644 7.36928 8.79864 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.034563 B = 0.005207 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.930842 B = 5376.266311 C = 5641.820171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.226 3.774 4 H -0.006 1.006 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.267 1.267 13 O -0.372 6.372 14 C 0.431 3.569 15 O -0.528 6.528 16 C -0.090 4.090 17 C -0.113 4.113 18 H 0.108 0.892 19 C -0.114 4.114 20 C 0.098 3.902 21 N -0.730 5.730 22 C 0.499 3.501 23 O -0.576 6.576 24 H 0.028 0.972 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.270 0.730 30 H 0.110 0.890 31 H 0.150 0.850 32 H 0.104 0.896 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.467 8.310 -16.310 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.012 0.988 5 C -0.588 4.588 6 H 0.082 0.918 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.192 1.192 13 O -0.289 6.289 14 C 0.275 3.725 15 O -0.417 6.417 16 C -0.127 4.127 17 C -0.134 4.134 18 H 0.126 0.874 19 C -0.151 4.151 20 C -0.025 4.025 21 N -0.385 5.385 22 C 0.285 3.715 23 O -0.454 6.454 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.167 0.833 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.129 0.871 35 H 0.106 0.894 36 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -12.310 8.095 -15.359 21.283 hybrid contribution 0.812 0.341 1.321 1.587 sum -11.499 8.436 -14.038 20.011 Atomic orbital electron populations 1.21688 0.96135 1.00523 1.00066 1.21831 0.94630 0.97829 1.02267 1.20260 0.94368 0.89310 0.78828 0.98791 1.21400 0.90739 1.39718 1.06913 0.91804 1.25863 1.04487 0.93903 0.94275 1.70047 1.37412 1.38140 1.09873 0.85139 0.77486 0.78474 0.78313 1.18725 1.20338 1.19221 1.86424 1.36829 1.63575 1.42085 1.24472 0.79719 0.76604 0.91696 1.90626 1.56016 1.57851 1.37213 1.21395 0.96701 1.01329 0.93317 1.21871 0.97331 0.96110 0.98133 0.87357 1.22815 1.02098 0.96496 0.93720 1.22401 0.96954 0.98856 0.84321 1.46334 1.49805 1.14894 1.27512 1.21466 0.78045 0.86680 0.85325 1.90833 1.43582 1.83682 1.27290 0.95317 0.93878 0.91804 0.93219 0.89914 0.92111 0.87192 0.83270 0.87711 0.85648 0.87086 0.89385 0.74906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.21 16 2 C -0.13 -6.77 5.49 30.60 0.17 -6.60 16 3 C 0.23 13.26 2.25 29.85 0.07 13.32 16 4 H -0.01 -0.39 7.16 -2.39 -0.02 -0.41 16 5 C -0.55 -33.30 8.90 25.60 0.23 -33.08 16 6 H 0.06 3.79 7.81 -2.91 -0.02 3.77 16 7 C 0.01 0.82 5.29 84.65 0.45 1.26 16 8 N -0.92 -55.44 11.30 21.45 0.24 -55.19 16 9 Si 0.98 45.09 29.54 68.60 2.03 47.12 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 O -0.37 -19.08 9.81 -51.43 -0.50 -19.59 16 14 C 0.43 19.15 5.88 71.23 0.42 19.57 16 15 O -0.53 -27.19 11.19 28.79 0.32 -26.87 16 16 C -0.09 -2.47 5.20 29.85 0.16 -2.31 16 17 C -0.11 -2.62 2.54 -10.80 -0.03 -2.65 16 18 H 0.11 2.72 7.90 -2.39 -0.02 2.70 16 19 C -0.11 -1.07 6.70 31.65 0.21 -0.86 16 20 C 0.10 0.87 7.78 86.83 0.68 1.54 16 21 N -0.73 -14.19 6.24 -459.79 -2.87 -17.05 16 22 C 0.50 15.58 7.70 87.90 0.68 16.26 16 23 O -0.58 -26.51 15.63 17.42 0.27 -26.24 16 24 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 25 H 0.04 1.84 6.06 -2.39 -0.01 1.83 16 26 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 27 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 4.80 5.95 -2.39 -0.01 4.78 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.11 2.82 8.12 -2.38 -0.02 2.80 16 31 H 0.15 2.82 8.14 -2.38 -0.02 2.80 16 32 H 0.10 0.68 7.91 -2.39 -0.02 0.66 16 33 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.36 8.14 -2.39 -0.02 0.35 16 35 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.41 7.09 8.96 -92.70 -0.83 6.26 16 Total: -1.00 -86.33 296.15 3.39 -82.94 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.26 Total: 13.64 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 3.64 Total: 1.25 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -2.63 Total: -72.25 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: 0.09 Total: -72.70 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -86.33 3.39 -82.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514886461.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.468 kcal (2) G-P(sol) polarization free energy of solvation -86.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds