Wall clock time and date at job start Sun Mar 29 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00100 * 2 1 4 4 N 1.46503 * 109.47168 * 125.00012 * 3 2 1 5 5 C 1.46505 * 119.99482 * 266.11298 * 4 3 2 6 6 C 1.50700 * 109.46849 * 83.69568 * 5 4 3 7 7 H 1.07995 * 120.00364 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99762 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00098 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00207 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47046 * 59.99612 * 10 8 6 12 12 H 1.48489 * 109.47232 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46779 * 300.00410 * 10 8 6 14 14 C 1.34772 * 120.00405 * 86.10831 * 4 3 2 15 15 O 1.21279 * 120.00203 * 5.38654 * 14 4 3 16 16 C 1.50698 * 120.00289 * 185.37604 * 14 4 3 17 17 O 1.42908 * 110.45445 * 45.81563 * 16 14 4 18 18 C 1.54512 * 110.51282 * 168.41929 * 16 14 4 19 19 C 1.54483 * 104.06011 * 118.64630 * 18 16 14 20 20 O 1.44426 * 104.80576 * 23.98307 * 19 18 16 21 21 C 1.44652 * 105.36741 * 319.56304 * 20 19 18 22 22 H 1.08004 * 120.00495 * 179.97438 * 1 2 3 23 23 H 1.08004 * 119.99807 * 359.72932 * 1 2 3 24 24 H 1.08003 * 119.99625 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46896 * 244.99665 * 3 2 1 26 26 H 1.08994 * 109.47320 * 4.99933 * 3 2 1 27 27 H 1.09000 * 109.46960 * 203.68529 * 5 4 3 28 28 H 1.08996 * 109.47626 * 323.69185 * 5 4 3 29 29 H 0.97005 * 120.00146 * 180.02562 * 9 8 6 30 30 H 0.96696 * 113.99982 * 280.60062 * 17 16 14 31 31 H 1.08996 * 110.50844 * 237.29042 * 18 16 14 32 32 H 1.08995 * 110.50824 * 0.02562 * 18 16 14 33 33 H 1.08999 * 110.36987 * 142.80879 * 19 18 16 34 34 H 1.08998 * 110.36990 * 265.14832 * 19 18 16 35 35 H 1.09000 * 110.33852 * 281.59663 * 21 20 19 36 36 H 1.08993 * 110.50812 * 159.18206 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5871 1.9422 2.3997 6 6 1.8095 0.9397 3.2130 7 1 1.6352 -0.0525 2.8240 8 6 1.3205 1.2894 4.4538 9 7 1.5331 2.4976 4.9278 10 14 0.3559 0.0471 5.4617 11 1 1.2078 -1.1386 5.7330 12 1 -0.0551 0.6653 6.7478 13 1 -0.8512 -0.3732 4.7057 14 6 4.2235 0.7950 1.0057 15 8 4.5959 0.3778 -0.0705 16 6 5.1360 0.7132 2.2022 17 8 4.4252 0.2202 3.3397 18 6 6.3542 -0.1859 1.8937 19 6 7.5665 0.7593 2.0467 20 8 7.1078 1.8084 2.9269 21 6 5.7536 2.0959 2.5075 22 1 -0.5401 -0.9353 -0.0004 23 1 -0.5400 0.9354 0.0044 24 1 1.8499 -0.9354 0.0004 25 1 2.6213 1.4025 -0.9314 26 1 1.3586 2.1316 0.0895 27 1 3.4729 2.2513 2.9546 28 1 1.9613 2.8120 2.2002 29 1 1.1894 2.7435 5.8010 30 1 3.8805 0.8857 3.7818 31 1 6.4155 -1.0049 2.6102 32 1 6.2966 -0.5708 0.8756 33 1 8.4070 0.2289 2.4944 34 1 7.8498 1.1727 1.0788 35 1 5.7583 2.7157 1.6108 36 1 5.2025 2.5892 3.3080 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569599918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:50 Heat of formation + Delta-G solvation = -96.573030 kcal Electronic energy + Delta-G solvation = -20401.835715 eV Core-core repulsion = 17273.337361 eV Total energy + Delta-G solvation = -3128.498355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34857 -38.13742 -35.91804 -35.24763 -33.20350 -32.23684 -30.72612 -28.61886 -27.71727 -25.70558 -23.50536 -22.73644 -21.44924 -19.66846 -18.68908 -16.93511 -16.72759 -16.45379 -16.05044 -15.45548 -15.04002 -14.78554 -14.60203 -14.17307 -13.56593 -12.93629 -12.67841 -12.49678 -12.42138 -12.24183 -11.81030 -11.47145 -11.44409 -11.18062 -11.05520 -10.91711 -10.71698 -10.61444 -10.33607 -10.18252 -9.85230 -9.49790 -9.00773 -8.72525 -8.57071 -7.90098 -6.30306 -4.36892 2.68751 3.10902 3.23319 3.27597 3.33001 3.81345 4.18115 4.28933 4.71507 4.86808 5.04496 5.07164 5.14242 5.35862 5.43588 5.60767 5.63635 5.78053 5.84729 5.90314 5.96982 6.13199 6.25529 6.29599 6.36178 6.50439 6.82562 6.97436 7.06246 7.15485 7.39039 7.67366 7.85554 8.14429 8.47161 8.66637 8.82090 9.30800 10.75071 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.017545 B = 0.009759 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.538656 B = 2868.589136 C = 3883.142877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.585 5.585 5 C 0.226 3.774 6 C -0.531 4.531 7 H 0.070 0.930 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.900 3.100 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.503 3.497 15 O -0.564 6.564 16 C 0.095 3.905 17 O -0.540 6.540 18 C -0.140 4.140 19 C 0.047 3.953 20 O -0.370 6.370 21 C 0.026 3.974 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.269 0.731 30 H 0.404 0.596 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -0.888 -5.373 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.165 4.165 3 C 0.025 3.975 4 N -0.315 5.315 5 C 0.106 3.894 6 C -0.569 4.569 7 H 0.088 0.912 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.727 3.273 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.290 3.710 15 O -0.445 6.445 16 C 0.049 3.951 17 O -0.356 6.356 18 C -0.177 4.177 19 C -0.030 4.030 20 O -0.288 6.288 21 C -0.051 4.051 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.264 0.736 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.841 -1.360 -5.711 7.610 hybrid contribution -1.217 -0.221 0.768 1.456 sum 3.624 -1.581 -4.943 6.330 Atomic orbital electron populations 1.23634 0.95698 1.01282 1.01840 1.23132 0.95982 0.98800 0.98616 1.20411 0.91783 0.95490 0.89819 1.48197 1.12162 1.56375 1.14775 1.19714 0.96213 0.94204 0.79225 1.21442 1.34745 0.99266 1.01462 0.91197 1.24977 0.95855 0.95500 0.97615 1.69900 1.45400 1.18421 1.19257 0.86499 0.80402 0.81375 0.79025 1.19772 1.21222 1.20124 1.21023 0.82887 0.77265 0.89790 1.90566 1.75514 1.49885 1.28555 1.22393 0.91645 0.94501 0.86536 1.86557 1.64299 1.43641 1.41127 1.22966 0.91300 0.98881 1.04603 1.23448 0.97043 0.88266 0.94251 1.89149 1.27822 1.55873 1.55970 1.24293 0.83774 0.95761 1.01303 0.89099 0.88709 0.88020 0.90436 0.90276 0.94809 0.94166 0.92162 0.73558 0.89229 0.88007 0.88890 0.92163 0.91642 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 14.32 29.02 0.42 -2.60 16 2 C -0.15 -2.63 9.49 -36.03 -0.34 -2.97 16 3 C 0.15 2.69 5.88 -5.20 -0.03 2.66 16 4 N -0.59 -11.97 2.45 -176.44 -0.43 -12.40 16 5 C 0.23 5.00 4.64 -5.19 -0.02 4.97 16 6 C -0.53 -12.91 6.80 -34.44 -0.23 -13.14 16 7 H 0.07 1.80 7.56 -52.49 -0.40 1.41 16 8 C 0.06 1.60 5.36 -17.82 -0.10 1.50 16 9 N -0.89 -22.92 13.29 55.43 0.74 -22.18 16 10 Si 0.90 20.18 29.54 -169.99 -5.02 15.15 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 C 0.50 10.45 6.58 -10.99 -0.07 10.38 16 15 O -0.56 -12.33 14.97 5.56 0.08 -12.25 16 16 C 0.09 1.84 1.04 -90.20 -0.09 1.74 16 17 O -0.54 -11.84 11.92 -35.23 -0.42 -12.26 16 18 C -0.14 -2.35 6.46 -25.16 -0.16 -2.52 16 19 C 0.05 0.68 7.64 37.94 0.29 0.97 16 20 O -0.37 -6.46 11.65 -35.23 -0.41 -6.87 16 21 C 0.03 0.46 6.11 37.94 0.23 0.69 16 22 H 0.09 1.34 8.06 -52.48 -0.42 0.91 16 23 H 0.09 1.44 7.84 -52.48 -0.41 1.03 16 24 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 25 H 0.08 1.36 7.47 -51.93 -0.39 0.98 16 26 H 0.08 1.34 7.57 -51.93 -0.39 0.95 16 27 H 0.03 0.75 3.48 -51.93 -0.18 0.57 16 28 H 0.04 0.93 7.97 -51.93 -0.41 0.52 16 29 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 30 H 0.40 9.24 4.36 45.56 0.20 9.44 16 31 H 0.09 1.48 8.00 -51.93 -0.42 1.06 16 32 H 0.10 1.73 6.57 -51.93 -0.34 1.39 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.09 7.86 -51.93 -0.41 0.69 16 36 H 0.11 1.99 6.49 -51.93 -0.34 1.65 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -27.29 295.32 -5.44 -32.74 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.31 Total: 11.92 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.12 Total: 1.69 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.30 Total: -34.59 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.75 Total: -31.38 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.29 -5.44 -32.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569599918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.834 kcal (2) G-P(sol) polarization free energy of solvation -27.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds