Wall clock time and date at job start Sun Mar 29 2020 23:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47778 * 2 1 4 4 H 1.09005 * 109.46952 * 305.43595 * 3 2 1 5 5 C 1.50698 * 109.47758 * 185.43097 * 3 2 1 6 6 H 1.08004 * 119.99859 * 244.90648 * 5 3 2 7 7 C 1.37872 * 120.00167 * 64.90367 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.03162 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03728 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46506 * 109.47021 * 65.42877 * 3 2 1 14 14 C 1.34781 * 119.99719 * 275.00534 * 13 3 2 15 15 O 1.21283 * 120.00234 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99631 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47494 * 59.99812 * 16 14 13 18 18 C 1.50699 * 109.47520 * 299.99974 * 16 14 13 19 19 O 1.20830 * 119.99486 * 359.97438 * 18 16 14 20 20 O 1.34228 * 120.00470 * 180.02562 * 18 16 14 21 21 C 1.53000 * 109.47265 * 179.97438 * 16 14 13 22 22 C 1.52993 * 117.50044 * 248.75044 * 21 16 14 23 23 C 1.52998 * 117.50311 * 180.08624 * 21 16 14 24 24 H 1.08998 * 109.47166 * 300.00164 * 1 2 3 25 25 H 1.09002 * 109.47604 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46751 * 59.99453 * 1 2 3 27 27 H 1.09006 * 109.47430 * 120.00273 * 2 1 3 28 28 H 1.09007 * 109.47117 * 239.99858 * 2 1 3 29 29 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 30 30 H 0.96993 * 120.00255 * 95.00186 * 13 3 2 31 31 H 0.96695 * 116.99861 * 179.97438 * 20 18 16 32 32 H 1.09002 * 115.55016 * 34.41571 * 21 16 14 33 33 H 1.09003 * 117.50195 * 359.97438 * 22 21 16 34 34 H 1.09002 * 117.50259 * 145.01678 * 22 21 16 35 35 H 1.09000 * 117.50217 * 214.98382 * 23 21 16 36 36 H 1.08999 * 117.49709 * 359.97438 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5995 1.9836 -0.8374 5 6 3.5411 1.4445 -0.1345 6 1 4.1550 1.8150 0.6731 7 6 4.1305 0.9735 -1.2884 8 7 3.3855 0.6520 -2.3234 9 14 5.9873 0.7916 -1.3816 10 1 6.3855 -0.5206 -0.8119 11 1 6.4215 0.8678 -2.7998 12 1 6.6310 1.8833 -0.6076 13 7 1.6614 2.0943 1.2562 14 6 0.4449 2.6610 1.3813 15 8 -0.3361 2.6316 0.4539 16 6 0.0552 3.3310 2.6737 17 1 0.7482 4.1457 2.8840 18 6 0.1060 2.3263 3.7957 19 8 0.4254 1.1832 3.5691 20 8 -0.2046 2.7009 5.0467 21 6 -1.3644 3.8883 2.5514 22 6 -1.5267 5.4095 2.5291 23 6 -1.9462 4.6127 3.7670 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.8002 0.3202 -3.1351 30 1 2.2861 2.1181 1.9978 31 1 -0.1579 2.0212 5.7329 32 1 -2.0494 3.3002 1.9406 33 1 -0.6221 6.0133 2.6020 34 1 -2.3186 5.8221 1.9040 35 1 -3.0139 4.5013 3.9558 36 1 -1.3178 4.6918 4.6540 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589464331.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:08 Heat of formation + Delta-G solvation = -112.442457 kcal Electronic energy + Delta-G solvation = -19757.528389 eV Core-core repulsion = 16628.341884 eV Total energy + Delta-G solvation = -3129.186505 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.68414 -38.79515 -37.12582 -36.03710 -34.93863 -32.37280 -31.27831 -29.84993 -26.81423 -23.29316 -22.86008 -22.19089 -21.36074 -19.74258 -19.28487 -18.17974 -17.27063 -16.67119 -16.02691 -15.76122 -15.20945 -14.69422 -14.17086 -14.05291 -13.87724 -13.27495 -12.68723 -12.58321 -11.93582 -11.70510 -11.58577 -11.40170 -11.28483 -11.25705 -10.98874 -10.84523 -10.74569 -10.38864 -10.29647 -10.10947 -9.96285 -9.58961 -9.07188 -9.03291 -8.45590 -7.78940 -6.11117 -4.17254 2.19404 2.68750 3.27121 3.33464 3.34704 3.60545 3.70942 4.09638 4.38450 4.56849 4.87776 4.96643 5.04653 5.22018 5.33102 5.42479 5.64741 5.72559 5.87449 6.11776 6.25638 6.45391 6.45842 6.54040 6.71308 7.14809 7.22770 7.39742 7.46574 7.65969 7.75320 7.88593 7.89452 8.12622 8.67158 8.80200 9.10121 9.48414 10.96846 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.029003 B = 0.005785 C = 0.005688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.180797 B = 4838.554320 C = 4921.697183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.118 4.118 3 C 0.270 3.730 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.691 5.691 14 C 0.521 3.479 15 O -0.534 6.534 16 C -0.076 4.076 17 H 0.126 0.874 18 C 0.487 3.513 19 O -0.491 6.491 20 O -0.513 6.513 21 C -0.136 4.136 22 C -0.168 4.168 23 C -0.173 4.173 24 H 0.045 0.955 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.407 0.593 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 6.446 13.231 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.169 3.831 4 H 0.074 0.926 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.337 5.337 14 C 0.303 3.697 15 O -0.412 6.412 16 C -0.098 4.098 17 H 0.144 0.856 18 C 0.328 3.672 19 O -0.376 6.376 20 O -0.325 6.325 21 C -0.155 4.155 22 C -0.205 4.205 23 C -0.210 4.210 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.266 0.734 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.477 6.305 11.949 15.442 hybrid contribution 1.411 -0.632 0.746 1.716 sum -6.066 5.673 12.695 15.171 Atomic orbital electron populations 1.21826 0.98139 0.98121 1.01382 1.21807 0.92985 0.99683 1.01201 1.18827 0.94404 0.89207 0.80689 0.92628 1.21182 0.90644 1.43603 1.01973 0.92183 1.24879 0.98441 0.95098 0.95094 1.69973 1.35356 1.43184 1.03242 0.86515 0.85054 0.78628 0.77207 1.20449 1.21156 1.19954 1.46384 1.14091 1.54797 1.18467 1.19322 0.83335 0.79609 0.87402 1.90685 1.50879 1.59418 1.40220 1.20958 0.99802 0.97822 0.91224 0.85645 1.22965 0.73030 0.88342 0.82879 1.90846 1.42581 1.20549 1.83664 1.84536 1.81926 1.47247 1.18796 1.21864 0.94528 0.95805 1.03257 1.23045 1.03566 0.92842 1.01041 1.23116 1.01526 1.03654 0.92662 0.93641 0.95973 0.93287 0.94615 0.90138 0.92576 0.78066 0.73414 0.85858 0.88612 0.88419 0.88745 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.52 37.15 0.32 -2.91 16 2 C -0.12 -2.98 5.49 -26.74 -0.15 -3.12 16 3 C 0.27 6.95 2.11 -69.08 -0.15 6.80 16 4 H 0.06 1.64 7.55 -51.93 -0.39 1.25 16 5 C -0.54 -14.39 8.67 -34.44 -0.30 -14.68 16 6 H 0.06 1.55 7.73 -52.48 -0.41 1.14 16 7 C 0.07 1.87 5.20 -17.82 -0.09 1.77 16 8 N -0.88 -25.16 12.01 55.43 0.67 -24.49 16 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.69 -14.81 4.42 -54.93 -0.24 -15.06 16 14 C 0.52 10.36 5.24 -10.99 -0.06 10.31 16 15 O -0.53 -12.27 12.79 5.55 0.07 -12.20 16 16 C -0.08 -1.10 2.80 -92.93 -0.26 -1.36 16 17 H 0.13 1.51 7.90 -51.93 -0.41 1.10 16 18 C 0.49 6.79 7.48 36.01 0.27 7.06 16 19 O -0.49 -8.68 16.15 -18.75 -0.30 -8.98 16 20 O -0.51 -4.96 11.36 -39.25 -0.45 -5.40 16 21 C -0.14 -1.79 4.74 -90.62 -0.43 -2.22 16 22 C -0.17 -1.81 10.18 -26.70 -0.27 -2.08 16 23 C -0.17 -1.73 9.45 -26.69 -0.25 -1.98 16 24 H 0.04 1.06 5.64 -51.93 -0.29 0.77 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 1.20 7.87 -51.93 -0.41 0.79 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.08 2.20 6.65 -51.92 -0.35 1.86 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 7.54 8.21 -40.82 -0.34 7.21 16 31 H 0.41 2.30 9.10 45.56 0.41 2.71 16 32 H 0.12 1.87 7.47 -51.93 -0.39 1.49 16 33 H 0.10 0.95 8.05 -51.93 -0.42 0.53 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.11 0.99 6.85 -51.93 -0.36 0.63 16 LS Contribution 301.37 15.07 4.54 4.54 Total: -1.00 -32.21 301.37 -6.27 -38.47 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.16 Total: 9.71 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.37 Total: -2.42 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.42 Total: -39.55 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.68 Total: -26.58 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.21 -6.27 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589464331.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.969 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds