Wall clock time and date at job start Sun Mar 29 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46604 * 2 1 4 4 C 1.34773 * 119.99968 * 299.99592 * 3 2 1 5 5 O 1.21283 * 120.00360 * 359.73034 * 4 3 2 6 6 C 1.50706 * 120.00081 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47348 * 179.72561 * 6 4 3 8 8 C 1.50696 * 109.46969 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00408 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99883 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99834 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99926 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47112 * 89.99781 * 12 10 8 14 14 H 1.48498 * 109.47011 * 210.00049 * 12 10 8 15 15 H 1.48494 * 109.47201 * 330.00023 * 12 10 8 16 16 C 1.50701 * 109.47337 * 240.00149 * 2 1 3 17 17 O 1.20827 * 119.99545 * 334.99778 * 16 2 1 18 18 O 1.34225 * 120.00133 * 154.99400 * 16 2 1 19 19 C 1.52992 * 109.47051 * 119.99687 * 2 1 3 20 20 C 1.53009 * 117.49591 * 123.62624 * 19 2 1 21 21 C 1.52998 * 59.99799 * 252.50977 * 20 19 2 22 22 H 1.09001 * 109.47281 * 60.00295 * 1 2 3 23 23 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47257 * 299.99991 * 1 2 3 25 25 H 0.96998 * 119.99507 * 120.00447 * 3 2 1 26 26 H 1.09001 * 109.46564 * 299.73030 * 6 4 3 27 27 H 1.08998 * 109.47012 * 59.72084 * 6 4 3 28 28 H 1.09000 * 109.46986 * 300.00089 * 7 6 4 29 29 H 1.09002 * 109.46857 * 60.00224 * 7 6 4 30 30 H 0.96999 * 119.99905 * 179.97438 * 11 10 8 31 31 H 0.96700 * 117.00127 * 180.02562 * 18 16 2 32 32 H 1.09000 * 115.55025 * 269.33080 * 19 2 1 33 33 H 1.08998 * 117.49769 * 359.97438 * 20 19 2 34 34 H 1.08998 * 117.49448 * 145.01790 * 20 19 2 35 35 H 1.09003 * 117.50211 * 252.51077 * 21 20 19 36 36 H 1.09000 * 117.50086 * 107.48848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.6927 2.2111 -1.0108 5 8 0.9995 1.8130 -1.9230 6 6 2.1954 3.6319 -1.0112 7 6 1.6909 4.3511 -2.2638 8 6 2.1931 5.7719 -2.2637 9 1 2.8106 6.1264 -1.4517 10 6 1.8642 6.6194 -3.3004 11 7 1.1118 6.1880 -4.2889 12 14 2.4872 8.3805 -3.3007 13 1 3.7981 8.4416 -3.9957 14 1 1.5120 9.2504 -4.0058 15 1 2.6470 8.8492 -1.9008 16 6 2.0324 -0.7104 -1.2305 17 8 1.3397 -1.5362 -1.7764 18 8 3.2493 -0.4256 -1.7200 19 6 2.0400 -0.7211 1.2492 20 6 2.9841 -1.9076 1.0440 21 6 1.5417 -2.1467 1.4949 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.5759 1.6985 0.7275 26 1 1.8283 4.1472 -0.1236 27 1 3.2853 3.6316 -1.0064 28 1 2.0580 3.8356 -3.1513 29 1 0.6009 4.3514 -2.2684 30 1 0.8801 6.7843 -5.0180 31 1 3.5279 -0.9067 -2.5112 32 1 2.2075 -0.0892 2.1214 33 1 3.2415 -2.1746 0.0191 34 1 3.7730 -2.0563 1.7813 35 1 1.3817 -2.4528 2.5287 36 1 0.8505 -2.5707 0.7665 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604270189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:43 Heat of formation + Delta-G solvation = -110.982562 kcal Electronic energy + Delta-G solvation = -19405.981113 eV Core-core repulsion = 16276.857914 eV Total energy + Delta-G solvation = -3129.123199 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10431 -38.94549 -37.65033 -36.00918 -34.36304 -33.46420 -31.34427 -29.89677 -26.09266 -25.15037 -23.42162 -22.51668 -21.68691 -19.78820 -19.53712 -18.07946 -17.39036 -16.94572 -16.40350 -15.58604 -14.98985 -14.80214 -14.62809 -14.35676 -13.80679 -13.50139 -13.11561 -12.67268 -12.34117 -12.11719 -12.07842 -11.75731 -11.66687 -11.39337 -11.16724 -10.93280 -10.82332 -10.61290 -10.56900 -10.49648 -9.96457 -9.67002 -9.18647 -9.03274 -8.98019 -8.32179 -5.96068 -4.00603 2.22134 2.88065 3.13312 3.28465 3.33524 3.39681 3.42138 3.55515 4.23626 4.47190 4.48886 4.61425 4.86509 5.05044 5.20793 5.33022 5.38994 5.52175 5.53352 5.64754 5.74984 5.81512 5.85212 6.20254 6.20697 6.31979 6.51664 6.58523 6.87035 7.73543 7.76777 7.85467 7.96481 8.06726 8.37716 8.67887 9.07760 9.63010 11.14873 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042844 B = 0.004448 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.384059 B = 6293.280277 C = 6423.396473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.222 3.778 3 N -0.728 5.728 4 C 0.514 3.486 5 O -0.527 6.527 6 C -0.127 4.127 7 C 0.037 3.963 8 C -0.527 4.527 9 H 0.056 0.944 10 C 0.058 3.942 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.489 3.511 17 O -0.513 6.513 18 O -0.506 6.506 19 C -0.159 4.159 20 C -0.177 4.177 21 C -0.166 4.166 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.404 0.596 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.406 0.594 32 H 0.128 0.872 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -15.132 13.694 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.133 3.867 3 N -0.384 5.384 4 C 0.304 3.696 5 O -0.402 6.402 6 C -0.167 4.167 7 C 0.000 4.000 8 C -0.566 4.566 9 H 0.074 0.926 10 C -0.143 4.143 11 N -0.528 5.528 12 Si 0.721 3.279 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.330 3.670 17 O -0.400 6.400 18 O -0.317 6.317 19 C -0.177 4.177 20 C -0.214 4.214 21 C -0.203 4.203 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.239 0.761 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.146 0.854 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.110 -15.363 13.029 20.382 hybrid contribution 0.848 0.810 -0.283 1.207 sum 3.958 -14.553 12.746 19.746 Atomic orbital electron populations 1.22146 0.90664 1.03720 1.04675 1.19586 0.95687 0.82717 0.88662 1.46280 1.55317 1.09543 1.27283 1.21688 0.78993 0.88680 0.80280 1.90675 1.37159 1.77128 1.35221 1.21870 1.01615 0.89009 1.04212 1.18901 0.97155 0.93687 0.90293 1.21212 1.32127 0.96284 1.06939 0.92573 1.25023 0.95148 0.98610 0.95567 1.69997 1.36619 1.35874 1.10320 0.86590 0.78574 0.84702 0.78074 1.20679 1.21232 1.19874 1.23580 0.78627 0.79752 0.85018 1.90685 1.56845 1.33531 1.58988 1.84575 1.34655 1.65840 1.46628 1.22359 1.05818 0.91616 0.97923 1.23153 0.93922 1.01270 1.03027 1.23100 0.97401 0.96589 1.03257 0.89372 0.90767 0.90871 0.76079 0.90044 0.89966 0.95847 0.95797 0.92947 0.73626 0.85421 0.88893 0.87757 0.87751 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.72 37.16 0.29 -1.85 16 2 C 0.22 2.94 0.88 -132.97 -0.12 2.83 16 3 N -0.73 -10.04 4.88 -48.68 -0.24 -10.28 16 4 C 0.51 9.70 7.15 -10.98 -0.08 9.62 16 5 O -0.53 -12.19 13.19 5.56 0.07 -12.12 16 6 C -0.13 -2.53 5.64 -27.88 -0.16 -2.69 16 7 C 0.04 0.99 4.26 -27.89 -0.12 0.88 16 8 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 9 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 12 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 C 0.49 7.56 3.54 36.01 0.13 7.69 16 17 O -0.51 -9.08 16.85 -18.75 -0.32 -9.40 16 18 O -0.51 -7.00 12.69 -39.24 -0.50 -7.50 16 19 C -0.16 -1.48 5.34 -90.62 -0.48 -1.96 16 20 C -0.18 -1.55 9.68 -26.73 -0.26 -1.81 16 21 C -0.17 -1.40 9.56 -26.73 -0.26 -1.65 16 22 H 0.09 1.56 6.18 -51.93 -0.32 1.24 16 23 H 0.07 0.95 6.72 -51.93 -0.35 0.60 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.40 4.19 8.40 -40.82 -0.34 3.85 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.41 4.04 9.10 45.56 0.41 4.45 16 32 H 0.13 0.91 8.04 -51.93 -0.42 0.49 16 33 H 0.09 0.96 6.19 -51.93 -0.32 0.64 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.01 7.29 -51.93 -0.38 0.63 16 LS Contribution 304.97 15.07 4.60 4.60 Total: -1.00 -36.02 304.97 -6.35 -42.36 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.21 Total: 5.02 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -1.47 Total: -2.55 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.50 Total: -36.99 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.74 Total: -29.02 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.02 -6.35 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604270189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.620 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds