Wall clock time and date at job start Sun Mar 29 2020 23:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46604 * 2 1 4 4 C 1.34773 * 119.99968 * 299.99592 * 3 2 1 5 5 O 1.21283 * 120.00360 * 359.73034 * 4 3 2 6 6 C 1.50706 * 120.00081 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47348 * 179.72561 * 6 4 3 8 8 C 1.50696 * 109.46969 * 179.97438 * 7 6 4 9 9 H 1.07997 * 120.00408 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99883 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99834 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99926 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47112 * 89.99781 * 12 10 8 14 14 H 1.48498 * 109.47011 * 210.00049 * 12 10 8 15 15 H 1.48494 * 109.47201 * 330.00023 * 12 10 8 16 16 C 1.50701 * 109.47337 * 240.00149 * 2 1 3 17 17 O 1.20827 * 119.99545 * 334.99778 * 16 2 1 18 18 O 1.34225 * 120.00133 * 154.99400 * 16 2 1 19 19 C 1.52992 * 109.47051 * 119.99687 * 2 1 3 20 20 C 1.53009 * 117.49591 * 123.62624 * 19 2 1 21 21 C 1.52998 * 59.99799 * 252.50977 * 20 19 2 22 22 H 1.09001 * 109.47281 * 60.00295 * 1 2 3 23 23 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47257 * 299.99991 * 1 2 3 25 25 H 0.96998 * 119.99507 * 120.00447 * 3 2 1 26 26 H 1.09001 * 109.46564 * 299.73030 * 6 4 3 27 27 H 1.08998 * 109.47012 * 59.72084 * 6 4 3 28 28 H 1.09000 * 109.46986 * 300.00089 * 7 6 4 29 29 H 1.09002 * 109.46857 * 60.00224 * 7 6 4 30 30 H 0.96999 * 119.99905 * 179.97438 * 11 10 8 31 31 H 0.96700 * 117.00127 * 180.02562 * 18 16 2 32 32 H 1.09000 * 115.55025 * 269.33080 * 19 2 1 33 33 H 1.08998 * 117.49769 * 359.97438 * 20 19 2 34 34 H 1.08998 * 117.49448 * 145.01790 * 20 19 2 35 35 H 1.09003 * 117.50211 * 252.51077 * 21 20 19 36 36 H 1.09000 * 117.50086 * 107.48848 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.6927 2.2111 -1.0108 5 8 0.9995 1.8130 -1.9230 6 6 2.1954 3.6319 -1.0112 7 6 1.6909 4.3511 -2.2638 8 6 2.1931 5.7719 -2.2637 9 1 2.8106 6.1264 -1.4517 10 6 1.8642 6.6194 -3.3004 11 7 1.1118 6.1880 -4.2889 12 14 2.4872 8.3805 -3.3007 13 1 3.7981 8.4416 -3.9957 14 1 1.5120 9.2504 -4.0058 15 1 2.6470 8.8492 -1.9008 16 6 2.0324 -0.7104 -1.2305 17 8 1.3397 -1.5362 -1.7764 18 8 3.2493 -0.4256 -1.7200 19 6 2.0400 -0.7211 1.2492 20 6 2.9841 -1.9076 1.0440 21 6 1.5417 -2.1467 1.4949 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 2.5759 1.6985 0.7275 26 1 1.8283 4.1472 -0.1236 27 1 3.2853 3.6316 -1.0064 28 1 2.0580 3.8356 -3.1513 29 1 0.6009 4.3514 -2.2684 30 1 0.8801 6.7843 -5.0180 31 1 3.5279 -0.9067 -2.5112 32 1 2.2075 -0.0892 2.1214 33 1 3.2415 -2.1746 0.0191 34 1 3.7730 -2.0563 1.7813 35 1 1.3817 -2.4528 2.5287 36 1 0.8505 -2.5707 0.7665 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604270189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:42 Heat of formation + Delta-G solvation = -138.071724 kcal Electronic energy + Delta-G solvation = -19407.155787 eV Core-core repulsion = 16276.857914 eV Total energy + Delta-G solvation = -3130.297873 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.27163 -40.39149 -38.59955 -37.21145 -35.69436 -35.41269 -33.17163 -31.30346 -27.80050 -26.56367 -24.53711 -23.46885 -23.16922 -21.05277 -20.81201 -19.29888 -18.86015 -18.37403 -17.83226 -17.08567 -16.47685 -16.41128 -15.92086 -15.58105 -15.06096 -14.74775 -14.41846 -14.18916 -14.16478 -13.40396 -13.28024 -13.20493 -12.81856 -12.80013 -12.64391 -12.45995 -12.36013 -11.90277 -11.74833 -11.62808 -11.48221 -11.30102 -11.27810 -10.67174 -10.56124 -10.26706 -8.16874 -6.30839 1.02596 1.43428 1.46049 1.56969 1.58629 1.93413 2.11504 2.44516 2.75718 3.16596 3.38276 3.68264 3.88980 3.98026 4.07309 4.20198 4.29038 4.50832 4.58507 4.60589 4.70060 4.74982 4.93389 4.98869 5.10583 5.14305 5.19601 5.33737 5.48234 5.52054 5.64716 5.86720 6.18713 6.54649 6.83858 6.88122 7.28076 7.39703 8.95830 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.042844 B = 0.004448 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.384059 B = 6293.280277 C = 6423.396473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.217 3.783 3 N -0.701 5.701 4 C 0.516 3.484 5 O -0.579 6.579 6 C -0.116 4.116 7 C 0.042 3.958 8 C -0.541 4.541 9 H 0.078 0.922 10 C -0.007 4.007 11 N -0.939 5.939 12 Si 0.973 3.027 13 H -0.272 1.272 14 H -0.288 1.288 15 H -0.253 1.253 16 C 0.484 3.516 17 O -0.546 6.546 18 O -0.508 6.508 19 C -0.158 4.158 20 C -0.177 4.177 21 C -0.160 4.160 22 H 0.043 0.957 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.425 0.575 26 H 0.110 0.890 27 H 0.107 0.893 28 H -0.021 1.021 29 H -0.018 1.018 30 H 0.262 0.738 31 H 0.419 0.581 32 H 0.163 0.837 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -14.552 16.927 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.129 3.871 3 N -0.357 5.357 4 C 0.305 3.695 5 O -0.458 6.458 6 C -0.156 4.156 7 C 0.005 3.995 8 C -0.579 4.579 9 H 0.096 0.904 10 C -0.204 4.204 11 N -0.579 5.579 12 Si 0.797 3.203 13 H -0.198 1.198 14 H -0.214 1.214 15 H -0.177 1.177 16 C 0.326 3.674 17 O -0.436 6.436 18 O -0.320 6.320 19 C -0.176 4.176 20 C -0.214 4.214 21 C -0.197 4.197 22 H 0.062 0.938 23 H 0.099 0.901 24 H 0.116 0.884 25 H 0.265 0.735 26 H 0.129 0.871 27 H 0.125 0.875 28 H -0.002 1.002 29 H 0.001 0.999 30 H 0.071 0.929 31 H 0.280 0.720 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.986 -14.796 16.327 22.591 hybrid contribution 0.280 0.543 -1.328 1.462 sum 5.266 -14.253 14.999 21.351 Atomic orbital electron populations 1.22112 0.91379 1.03890 1.03625 1.19799 0.95327 0.82137 0.89822 1.45892 1.54299 1.09300 1.26230 1.21454 0.78467 0.88874 0.80664 1.90680 1.39582 1.77959 1.37585 1.21635 1.02874 0.89419 1.01647 1.18685 0.94527 0.94235 0.92090 1.21725 1.31927 0.96819 1.07443 0.90380 1.26138 0.95198 1.04072 0.95040 1.70183 1.38452 1.37921 1.11382 0.85325 0.77827 0.78051 0.79069 1.19800 1.21368 1.17686 1.24113 0.78567 0.79323 0.85378 1.90664 1.57682 1.35170 1.60041 1.84535 1.34064 1.65980 1.47445 1.22419 1.06415 0.92135 0.96659 1.23227 0.94890 1.00607 1.02668 1.23180 0.96713 0.95437 1.04382 0.93785 0.90076 0.88386 0.73506 0.87145 0.87534 1.00248 0.99941 0.92949 0.72019 0.82002 0.91034 0.85087 0.84764 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 7.72 71.98 0.56 -3.64 16 2 C 0.22 5.48 0.88 2.86 0.00 5.48 16 3 N -0.70 -17.94 4.88 -426.32 -2.08 -20.02 16 4 C 0.52 19.39 7.15 87.66 0.63 20.01 16 5 O -0.58 -28.06 13.19 -3.04 -0.04 -28.10 16 6 C -0.12 -4.50 5.64 29.85 0.17 -4.34 16 7 C 0.04 2.34 4.26 29.85 0.13 2.46 16 8 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 9 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 10 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 11 N -0.94 -59.85 13.29 21.45 0.28 -59.57 16 12 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 15 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 16 C 0.48 15.03 3.54 71.24 0.25 15.28 16 17 O -0.55 -20.01 16.85 21.96 0.37 -19.64 16 18 O -0.51 -13.97 12.69 -51.36 -0.65 -14.62 16 19 C -0.16 -2.42 5.34 -10.79 -0.06 -2.48 16 20 C -0.18 -2.60 9.68 30.60 0.30 -2.30 16 21 C -0.16 -2.23 9.56 30.59 0.29 -1.93 16 22 H 0.04 1.62 6.18 -2.39 -0.01 1.61 16 23 H 0.08 2.08 6.72 -2.39 -0.02 2.06 16 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.43 7.20 8.40 -92.71 -0.78 6.42 16 26 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 27 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 28 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 29 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 30 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.42 8.51 9.10 -74.06 -0.67 7.84 16 32 H 0.16 1.42 8.04 -2.39 -0.02 1.40 16 33 H 0.07 1.39 6.19 -2.39 -0.01 1.37 16 34 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.54 7.29 -2.39 -0.02 1.52 16 Total: -1.00 -83.20 304.97 2.53 -80.67 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.34 Total: 16.86 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 2.96 Total: -1.68 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.79 Total: -79.59 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -0.32 Total: -62.37 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -83.20 2.53 -80.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604270189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.402 kcal (2) G-P(sol) polarization free energy of solvation -83.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds