Wall clock time and date at job start Sun Mar 29 2020 23:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.62930 * 2 1 4 4 O 1.43375 * 109.62926 * 120.38986 * 2 1 3 5 5 C 1.44194 * 107.28552 * 119.21154 * 4 2 1 6 6 C 1.54916 * 103.07570 * 338.56386 * 5 4 2 7 7 H 1.09009 * 111.00913 * 277.43864 * 6 5 4 8 8 C 1.50696 * 110.97907 * 153.67324 * 6 5 4 9 9 C 1.32989 * 120.00572 * 126.20592 * 8 6 5 10 10 C 1.47110 * 120.00321 * 180.02562 * 9 8 6 11 11 O 1.21613 * 119.99982 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00069 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47506 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99481 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99823 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99658 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47088 * 90.00415 * 18 16 14 20 20 H 1.48507 * 109.46582 * 209.99805 * 18 16 14 21 21 H 1.48497 * 109.47212 * 329.99543 * 18 16 14 22 22 O 1.43748 * 109.63136 * 239.75529 * 2 1 3 23 23 H 1.08998 * 109.47026 * 301.06456 * 1 2 3 24 24 H 1.09001 * 109.46793 * 61.06297 * 1 2 3 25 25 H 1.09001 * 109.47178 * 181.06436 * 1 2 3 26 26 H 1.08996 * 109.46923 * 178.93634 * 3 2 1 27 27 H 1.09001 * 109.46793 * 298.94270 * 3 2 1 28 28 H 1.09002 * 109.47294 * 58.93562 * 3 2 1 29 29 H 1.08996 * 110.69608 * 96.96176 * 5 4 2 30 30 H 1.09001 * 110.69660 * 220.16696 * 5 4 2 31 31 H 1.08003 * 119.99701 * 306.21140 * 8 6 5 32 32 H 1.08001 * 120.00249 * 0.02562 * 9 8 6 33 33 H 0.97001 * 120.00318 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47320 * 300.00699 * 13 12 10 35 35 H 1.09003 * 109.47035 * 60.00043 * 13 12 10 36 36 H 0.97002 * 119.99313 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6832 1.1649 5 6 2.7885 -1.8097 0.7104 6 6 2.2652 -2.0381 -0.7298 7 1 1.3458 -2.6236 -0.7233 8 6 3.3149 -2.6969 -1.5871 9 6 3.0294 -3.8167 -2.2452 10 6 4.0543 -4.4601 -3.0816 11 8 5.1627 -3.9678 -3.1717 12 7 3.7647 -5.5947 -3.7489 13 6 4.7852 -6.2352 -4.5823 14 6 4.2114 -7.4777 -5.2133 15 1 3.1886 -7.7615 -5.0137 16 6 4.9920 -8.2519 -6.0452 17 7 4.4910 -9.3359 -6.5962 18 14 6.7612 -7.7611 -6.3897 19 1 7.6537 -8.3862 -5.3808 20 1 7.1478 -8.2237 -7.7469 21 1 6.8884 -6.2834 -6.3155 22 8 2.0130 -0.6820 -1.1696 23 1 -0.3633 0.5303 0.8803 24 1 -0.3633 0.4972 -0.8994 25 1 -0.3633 -1.0275 0.0191 26 1 3.1338 1.4381 0.0191 27 1 1.6976 1.9503 -0.8993 28 1 1.6666 1.9615 0.8803 29 1 3.8508 -1.5661 0.7001 30 1 2.5988 -2.6845 1.3323 31 1 4.2993 -2.2597 -1.6670 32 1 2.0450 -4.2539 -2.1656 33 1 2.8803 -5.9868 -3.6779 34 1 5.1028 -5.5442 -5.3632 35 1 5.6422 -6.5043 -3.9649 36 1 5.0404 -9.8808 -7.1812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634246281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:57 Heat of formation + Delta-G solvation = -115.252020 kcal Electronic energy + Delta-G solvation = -18307.792024 eV Core-core repulsion = 15178.483688 eV Total energy + Delta-G solvation = -3129.308336 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91588 -39.02813 -35.52150 -34.62003 -34.19770 -32.45136 -32.19062 -28.87608 -27.81856 -27.63679 -24.38601 -22.37294 -21.46030 -20.74983 -19.60513 -18.05974 -17.12086 -16.66616 -16.17026 -15.60706 -15.17556 -15.02371 -14.49881 -14.28314 -14.09005 -13.72999 -13.27959 -12.97382 -12.95034 -12.56035 -12.51284 -12.39374 -12.26970 -12.14386 -11.92050 -11.63783 -11.04846 -10.80459 -10.50782 -10.00004 -9.96816 -9.61644 -9.53703 -9.40708 -8.80783 -8.20426 -6.24014 -4.26689 1.29832 3.08747 3.25103 3.32048 3.40333 3.57953 3.72361 3.94152 4.29013 4.31664 4.46889 4.50107 4.64266 4.75536 4.95645 5.11327 5.11415 5.24148 5.25090 5.36049 5.37578 5.39209 5.51766 5.65548 5.75388 5.85748 6.23672 6.29378 6.78007 6.80747 7.02825 7.15628 7.34456 8.08960 8.45777 8.70838 8.85130 9.35707 10.87896 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.054040 B = 0.003280 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.007464 B = 8534.338290 C = 8716.634959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.247 3.753 3 C -0.154 4.154 4 O -0.380 6.380 5 C 0.030 3.970 6 C 0.076 3.924 7 H 0.093 0.907 8 C -0.090 4.090 9 C -0.165 4.165 10 C 0.527 3.473 11 O -0.558 6.558 12 N -0.696 5.696 13 C 0.219 3.781 14 C -0.545 4.545 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 O -0.361 6.361 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.398 0.602 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 17.080 14.574 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.171 3.829 3 C -0.212 4.212 4 O -0.301 6.301 5 C -0.047 4.047 6 C 0.019 3.981 7 H 0.111 0.889 8 C -0.110 4.110 9 C -0.186 4.186 10 C 0.313 3.687 11 O -0.439 6.439 12 N -0.343 5.343 13 C 0.096 3.904 14 C -0.583 4.583 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 O -0.282 6.282 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.232 0.768 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.997 17.381 14.341 23.595 hybrid contribution 0.377 -0.328 -0.297 0.582 sum -6.620 17.053 14.043 23.062 Atomic orbital electron populations 1.22378 0.93679 1.03421 1.03355 1.23429 0.93060 0.91569 0.74888 1.22076 1.02635 0.93299 1.03172 1.88886 1.69620 1.42012 1.29570 1.24203 0.96949 0.89689 0.93822 1.22952 0.97534 0.84789 0.92821 0.88932 1.23137 0.99115 0.94559 0.94181 1.22916 0.99819 0.97783 0.98060 1.18466 0.87742 0.81587 0.80874 1.90750 1.23452 1.64508 1.65205 1.46132 1.17093 1.24336 1.46736 1.19542 0.87747 0.93210 0.89851 1.21083 1.00977 1.06935 1.29309 0.90198 1.24798 0.98671 0.94384 0.94762 1.69880 1.37139 1.14747 1.31125 0.86811 0.84726 0.80084 0.78046 1.19808 1.20849 1.18480 1.89354 1.85847 1.21225 1.31738 0.90720 0.90465 0.91738 0.91322 0.90582 0.90524 0.89961 0.87744 0.84561 0.85436 0.76763 0.95501 0.95951 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.20 37.16 0.34 -1.03 16 2 C 0.25 2.48 1.47 -26.73 -0.04 2.44 16 3 C -0.15 -1.30 9.24 37.16 0.34 -0.96 16 4 O -0.38 -4.07 10.87 -59.04 -0.64 -4.71 16 5 C 0.03 0.28 7.53 38.17 0.29 0.57 16 6 C 0.08 0.80 3.84 -26.87 -0.10 0.70 16 7 H 0.09 0.83 7.90 -51.92 -0.41 0.42 16 8 C -0.09 -1.14 8.84 -36.13 -0.32 -1.46 16 9 C -0.16 -2.26 9.65 -37.80 -0.36 -2.62 16 10 C 0.53 10.06 7.76 -12.66 -0.10 9.96 16 11 O -0.56 -12.74 16.22 5.27 0.09 -12.66 16 12 N -0.70 -14.03 5.54 -62.67 -0.35 -14.38 16 13 C 0.22 5.37 4.50 -5.19 -0.02 5.34 16 14 C -0.55 -14.89 9.83 -34.44 -0.34 -15.23 16 15 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 18 Si 0.88 21.36 27.47 -169.99 -4.67 16.70 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 22 O -0.36 -4.33 10.71 -59.04 -0.63 -4.97 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.91 7.49 -52.48 -0.39 1.52 16 32 H 0.13 1.34 7.91 -52.49 -0.42 0.92 16 33 H 0.40 6.96 8.30 -40.82 -0.34 6.62 16 34 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 35 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -32.75 310.38 -6.44 -39.20 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.28 Total: 1.95 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.41 Total: -0.20 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.43 Total: -39.99 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.19 Total: -22.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.75 -6.44 -39.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634246281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.057 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds