Wall clock time and date at job start Sun Mar 29 2020 23:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.62930 * 2 1 4 4 O 1.43375 * 109.62926 * 120.38986 * 2 1 3 5 5 C 1.44194 * 107.28552 * 119.21154 * 4 2 1 6 6 C 1.54916 * 103.07570 * 338.56386 * 5 4 2 7 7 H 1.09009 * 111.00913 * 277.43864 * 6 5 4 8 8 C 1.50696 * 110.97907 * 153.67324 * 6 5 4 9 9 C 1.32989 * 120.00572 * 126.20592 * 8 6 5 10 10 C 1.47110 * 120.00321 * 180.02562 * 9 8 6 11 11 O 1.21613 * 119.99982 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00069 * 179.97438 * 12 10 9 14 14 C 1.50701 * 109.47506 * 179.97438 * 13 12 10 15 15 H 1.08002 * 119.99481 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99823 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99658 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47088 * 90.00415 * 18 16 14 20 20 H 1.48507 * 109.46582 * 209.99805 * 18 16 14 21 21 H 1.48497 * 109.47212 * 329.99543 * 18 16 14 22 22 O 1.43748 * 109.63136 * 239.75529 * 2 1 3 23 23 H 1.08998 * 109.47026 * 301.06456 * 1 2 3 24 24 H 1.09001 * 109.46793 * 61.06297 * 1 2 3 25 25 H 1.09001 * 109.47178 * 181.06436 * 1 2 3 26 26 H 1.08996 * 109.46923 * 178.93634 * 3 2 1 27 27 H 1.09001 * 109.46793 * 298.94270 * 3 2 1 28 28 H 1.09002 * 109.47294 * 58.93562 * 3 2 1 29 29 H 1.08996 * 110.69608 * 96.96176 * 5 4 2 30 30 H 1.09001 * 110.69660 * 220.16696 * 5 4 2 31 31 H 1.08003 * 119.99701 * 306.21140 * 8 6 5 32 32 H 1.08001 * 120.00249 * 0.02562 * 9 8 6 33 33 H 0.97001 * 120.00318 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47320 * 300.00699 * 13 12 10 35 35 H 1.09003 * 109.47035 * 60.00043 * 13 12 10 36 36 H 0.97002 * 119.99313 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 8 2.0117 -0.6832 1.1649 5 6 2.7885 -1.8097 0.7104 6 6 2.2652 -2.0381 -0.7298 7 1 1.3458 -2.6236 -0.7233 8 6 3.3149 -2.6969 -1.5871 9 6 3.0294 -3.8167 -2.2452 10 6 4.0543 -4.4601 -3.0816 11 8 5.1627 -3.9678 -3.1717 12 7 3.7647 -5.5947 -3.7489 13 6 4.7852 -6.2352 -4.5823 14 6 4.2114 -7.4777 -5.2133 15 1 3.1886 -7.7615 -5.0137 16 6 4.9920 -8.2519 -6.0452 17 7 4.4910 -9.3359 -6.5962 18 14 6.7612 -7.7611 -6.3897 19 1 7.6537 -8.3862 -5.3808 20 1 7.1478 -8.2237 -7.7469 21 1 6.8884 -6.2834 -6.3155 22 8 2.0130 -0.6820 -1.1696 23 1 -0.3633 0.5303 0.8803 24 1 -0.3633 0.4972 -0.8994 25 1 -0.3633 -1.0275 0.0191 26 1 3.1338 1.4381 0.0191 27 1 1.6976 1.9503 -0.8993 28 1 1.6666 1.9615 0.8803 29 1 3.8508 -1.5661 0.7001 30 1 2.5988 -2.6845 1.3323 31 1 4.2993 -2.2597 -1.6670 32 1 2.0450 -4.2539 -2.1656 33 1 2.8803 -5.9868 -3.6779 34 1 5.1028 -5.5442 -5.3632 35 1 5.6422 -6.5043 -3.9649 36 1 5.0404 -9.8808 -7.1812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634246281.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:56 Heat of formation + Delta-G solvation = -139.258806 kcal Electronic energy + Delta-G solvation = -18308.833037 eV Core-core repulsion = 15178.483688 eV Total energy + Delta-G solvation = -3130.349349 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.70026 -40.59700 -36.47661 -36.16418 -35.30500 -34.43533 -33.12735 -30.37905 -29.02492 -28.35856 -25.59286 -23.95943 -22.28171 -22.09848 -20.91023 -19.46090 -18.44639 -17.86696 -17.25341 -17.06793 -16.37182 -16.21354 -16.04009 -15.72046 -15.01398 -14.84149 -14.54054 -14.39352 -14.20259 -13.85316 -13.65398 -13.27900 -13.13227 -13.06554 -12.94739 -12.72643 -12.67929 -12.46815 -11.94805 -11.67732 -11.30616 -11.03587 -10.93218 -10.72430 -10.67823 -9.95911 -8.41245 -6.48547 0.15302 1.32368 1.34726 1.47164 2.12004 2.26987 2.33238 2.54196 2.94155 2.97451 3.41783 3.63558 3.75211 3.90624 3.93418 4.15526 4.19672 4.30625 4.57677 4.67772 4.70988 4.73765 4.74947 4.78772 4.92227 4.99602 5.14233 5.18485 5.22498 5.23791 5.30672 5.46157 6.06130 6.07173 6.52190 6.78732 7.13114 7.33247 8.73443 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.054040 B = 0.003280 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.007464 B = 8534.338290 C = 8716.634959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.237 3.763 3 C -0.156 4.156 4 O -0.390 6.390 5 C 0.028 3.972 6 C 0.078 3.922 7 H 0.117 0.883 8 C -0.068 4.068 9 C -0.170 4.170 10 C 0.525 3.475 11 O -0.601 6.601 12 N -0.696 5.696 13 C 0.229 3.771 14 C -0.548 4.548 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.930 5.930 18 Si 0.937 3.063 19 H -0.264 1.264 20 H -0.273 1.273 21 H -0.261 1.261 22 O -0.382 6.382 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.118 0.882 32 H 0.168 0.832 33 H 0.412 0.588 34 H 0.013 0.987 35 H 0.014 0.986 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 18.115 15.738 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.161 3.839 3 C -0.213 4.213 4 O -0.311 6.311 5 C -0.048 4.048 6 C 0.021 3.979 7 H 0.135 0.865 8 C -0.089 4.089 9 C -0.190 4.190 10 C 0.315 3.685 11 O -0.485 6.485 12 N -0.344 5.344 13 C 0.106 3.894 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.761 3.239 19 H -0.189 1.189 20 H -0.198 1.198 21 H -0.186 1.186 22 O -0.304 6.304 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.146 0.854 31 H 0.136 0.864 32 H 0.185 0.815 33 H 0.248 0.752 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.715 18.421 15.523 25.295 hybrid contribution 0.550 -0.582 -0.605 1.004 sum -7.166 17.839 14.919 24.334 Atomic orbital electron populations 1.22374 0.92119 1.03835 1.04234 1.23742 0.94255 0.91814 0.74103 1.22120 1.02048 0.92869 1.04244 1.88876 1.69865 1.42406 1.29998 1.24309 0.96725 0.90258 0.93503 1.23030 0.97688 0.84582 0.92629 0.86541 1.23209 0.98976 0.93689 0.92976 1.22749 0.99927 0.98263 0.98067 1.19246 0.88220 0.80675 0.80388 1.90726 1.25686 1.65452 1.66628 1.45956 1.16934 1.24914 1.46629 1.19147 0.88484 0.91983 0.89828 1.21284 1.00313 1.07787 1.29189 0.92070 1.25599 1.02730 0.94357 0.94696 1.69979 1.38866 1.15938 1.32131 0.85861 0.79999 0.79595 0.78467 1.18864 1.19785 1.18560 1.89330 1.86219 1.21873 1.32984 0.89529 0.89900 0.91590 0.92316 0.89932 0.89040 0.90302 0.85425 0.86431 0.81502 0.75171 0.96892 0.96778 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.20 71.98 0.66 -1.62 16 2 C 0.24 4.27 1.47 30.59 0.04 4.32 16 3 C -0.16 -2.37 9.24 71.98 0.66 -1.71 16 4 O -0.39 -7.51 10.87 -126.22 -1.37 -8.88 16 5 C 0.03 0.47 7.53 72.64 0.55 1.01 16 6 C 0.08 1.44 3.84 30.50 0.12 1.55 16 7 H 0.12 1.64 7.90 -2.38 -0.02 1.63 16 8 C -0.07 -1.61 8.84 24.52 0.22 -1.39 16 9 C -0.17 -4.29 9.65 23.43 0.23 -4.06 16 10 C 0.53 19.65 7.76 86.57 0.67 20.32 16 11 O -0.60 -27.51 16.22 -4.07 -0.07 -27.58 16 12 N -0.70 -27.67 5.54 -470.43 -2.61 -30.28 16 13 C 0.23 11.27 4.50 85.63 0.38 11.65 16 14 C -0.55 -30.14 9.83 25.60 0.25 -29.89 16 15 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 16 C 0.03 1.50 5.47 84.66 0.46 1.97 16 17 N -0.93 -55.40 13.96 21.45 0.30 -55.10 16 18 Si 0.94 43.99 27.47 68.60 1.88 45.87 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 22 O -0.38 -8.47 10.71 -126.22 -1.35 -9.82 16 23 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.34 8.03 -2.39 -0.02 1.32 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.12 3.25 7.49 -2.91 -0.02 3.23 16 32 H 0.17 2.88 7.91 -2.91 -0.02 2.85 16 33 H 0.41 13.98 8.30 -92.71 -0.77 13.21 16 34 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 35 H 0.01 0.72 7.57 -2.39 -0.02 0.71 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.41 310.38 1.28 -69.12 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.25 Total: 14.51 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: 4.25 Total: 2.15 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.31 Total: -85.38 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -2.79 Total: -46.28 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -70.41 1.28 -69.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634246281.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.135 kcal (2) G-P(sol) polarization free energy of solvation -70.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds