Wall clock time and date at job start Sun Mar 29 2020 23:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47348 * 2 1 4 4 C 1.50698 * 109.47180 * 120.00116 * 2 1 3 5 5 H 1.07995 * 120.00101 * 120.00056 * 4 2 1 6 6 C 1.37881 * 119.99913 * 299.99847 * 4 2 1 7 7 N 1.31519 * 119.99633 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00156 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47322 * 180.02562 * 8 6 4 10 10 H 1.48506 * 109.47031 * 300.00069 * 8 6 4 11 11 H 1.48497 * 109.47214 * 59.99793 * 8 6 4 12 12 C 1.50703 * 109.47076 * 239.99927 * 2 1 3 13 13 O 1.21278 * 119.99945 * 262.07647 * 12 2 1 14 14 N 1.34772 * 119.99785 * 82.08015 * 12 2 1 15 15 C 1.46505 * 119.99840 * 183.06290 * 14 12 2 16 16 C 1.46503 * 120.00435 * 3.06421 * 14 12 2 17 17 H 1.09004 * 112.84488 * 349.32426 * 16 14 12 18 18 C 1.53776 * 113.61477 * 120.52004 * 16 14 12 19 19 C 1.53788 * 87.07941 * 139.98266 * 18 16 14 20 20 H 1.08998 * 113.61358 * 89.11652 * 19 18 16 21 21 C 1.50694 * 113.61268 * 220.01801 * 19 18 16 22 22 O 1.20827 * 120.00504 * 0.02562 * 21 19 18 23 23 O 1.34237 * 119.99679 * 179.97438 * 21 19 18 24 24 C 1.53774 * 87.07973 * 334.56738 * 19 18 16 25 25 H 1.08991 * 109.46860 * 177.12437 * 1 2 3 26 26 H 1.08998 * 109.46911 * 297.12947 * 1 2 3 27 27 H 1.08997 * 109.46698 * 57.12548 * 1 2 3 28 28 H 0.97001 * 119.99632 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.46872 * 84.64681 * 15 14 12 30 30 H 1.09001 * 109.46803 * 204.64995 * 15 14 12 31 31 H 1.08997 * 109.46872 * 324.64386 * 15 14 12 32 32 H 1.08998 * 113.61621 * 254.52973 * 18 16 14 33 33 H 1.08996 * 113.61659 * 25.43993 * 18 16 14 34 34 H 0.96702 * 116.99753 * 180.02562 * 23 21 19 35 35 H 1.08995 * 113.61980 * 270.88140 * 24 19 18 36 36 H 1.09007 * 113.61610 * 139.97653 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 1.8269 -0.4199 5.2204 10 1 1.8280 -2.5198 4.0081 11 1 3.8075 -1.1189 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.3710 -1.8731 -1.1636 14 7 2.1053 -0.0537 -2.4051 15 6 2.5297 -0.7622 -3.6152 16 6 1.7603 1.3685 -2.4720 17 1 1.2877 1.7327 -1.5597 18 6 2.9121 2.2592 -2.9669 19 6 1.8576 3.0437 -3.7655 20 1 1.4107 3.8666 -3.2077 21 6 2.3212 3.4505 -5.1404 22 8 3.4307 3.1541 -5.5162 23 8 1.5012 4.1412 -5.9481 24 6 1.0099 1.7608 -3.7557 25 1 -0.3633 -1.0263 -0.0516 26 1 -0.3633 0.4686 0.9146 27 1 -0.3632 0.5578 -0.8631 28 1 0.7087 1.1613 3.4843 29 1 1.6715 -1.2640 -4.0623 30 1 2.9449 -0.0487 -4.3271 31 1 3.2885 -1.5007 -3.3566 32 1 3.3839 2.8424 -2.1761 33 1 3.6323 1.7334 -3.5937 34 1 1.8429 4.3794 -6.8208 35 1 1.2101 1.0986 -4.5980 36 1 -0.0540 1.9415 -3.6016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604060708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:35 Heat of formation + Delta-G solvation = -107.794284 kcal Electronic energy + Delta-G solvation = -19464.873229 eV Core-core repulsion = 16335.888284 eV Total energy + Delta-G solvation = -3128.984945 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 255.130 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.91430 -39.40782 -37.69479 -36.19544 -33.81961 -33.53758 -30.59865 -27.34457 -26.26022 -25.78275 -25.17308 -22.51069 -21.60876 -19.50133 -18.81854 -18.08051 -16.97065 -16.41381 -15.98820 -15.68948 -15.22742 -14.74668 -14.52203 -14.38700 -13.45308 -12.93556 -12.81657 -12.55862 -12.42994 -12.17767 -11.81500 -11.68463 -11.52883 -11.28603 -11.10726 -10.96274 -10.70451 -10.65958 -10.61642 -10.44029 -10.28116 -9.99242 -9.00617 -8.60829 -8.31232 -8.09027 -6.04375 -4.07434 2.02529 2.85821 3.36024 3.38513 3.43729 3.64220 3.67916 4.28094 4.38777 4.46248 4.81740 4.84987 5.21974 5.28884 5.38194 5.52382 5.58707 5.68831 5.79932 5.84595 5.93818 5.99987 6.21899 6.28544 6.38077 6.61691 6.83614 6.94803 7.07699 7.41813 7.73120 7.75548 7.95792 8.08921 8.36818 8.98652 9.19537 9.57577 11.02897 Molecular weight = 255.13amu Principal moments of inertia in cm(-1) A = 0.033265 B = 0.005164 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.511739 B = 5420.866756 C = 5754.197410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.543 6.543 14 N -0.619 5.619 15 C 0.085 3.915 16 C 0.126 3.874 17 H 0.134 0.866 18 C -0.136 4.136 19 C -0.110 4.110 20 H 0.130 0.870 21 C 0.491 3.509 22 O -0.515 6.515 23 O -0.516 6.516 24 C -0.133 4.133 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.013 0.987 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.406 0.594 35 H 0.090 0.910 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 7.721 -14.179 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.538 4.538 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.418 6.418 14 N -0.353 5.353 15 C -0.058 4.058 16 C 0.020 3.980 17 H 0.152 0.848 18 C -0.175 4.175 19 C -0.130 4.130 20 H 0.148 0.852 21 C 0.333 3.667 22 O -0.403 6.403 23 O -0.328 6.328 24 C -0.172 4.172 25 H 0.050 0.950 26 H 0.114 0.886 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.265 0.735 35 H 0.108 0.892 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.959 6.963 -13.690 15.389 hybrid contribution 0.537 -0.080 0.032 0.544 sum -0.421 6.884 -13.658 15.300 Atomic orbital electron populations 1.21736 0.96191 0.99644 1.01439 1.18892 0.94242 0.96650 0.89251 0.93405 1.21059 1.31122 1.12560 0.89108 0.91270 1.24922 0.95079 0.95052 0.99030 1.69844 1.36992 1.23045 1.23673 0.86516 0.79243 0.79813 0.81641 1.21332 1.20164 1.20224 1.22066 0.75283 0.87128 0.84185 1.90531 1.48169 1.17949 1.85168 1.48044 1.68893 1.09409 1.08994 1.21458 0.99850 0.97052 0.87479 1.22612 0.95171 0.81272 0.98914 0.84847 1.23540 0.97265 0.97394 0.99276 1.22360 1.01311 0.99505 0.89809 0.85169 1.23400 0.82434 0.73464 0.87373 1.90716 1.21659 1.52407 1.75515 1.84578 1.48865 1.68498 1.30817 1.23430 1.00186 0.93929 0.99607 0.94965 0.88594 0.96758 0.92869 0.93642 0.91997 0.91172 0.89531 0.88330 0.73518 0.89191 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.80 37.16 0.33 -2.70 16 2 C 0.03 0.75 1.77 -92.92 -0.16 0.58 16 3 H 0.05 1.16 6.58 -51.93 -0.34 0.82 16 4 C -0.50 -14.06 8.34 -34.44 -0.29 -14.35 16 5 H 0.07 2.06 6.97 -52.49 -0.37 1.70 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -24.57 11.30 55.43 0.63 -23.94 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.52 12.01 6.81 -10.99 -0.07 11.94 16 13 O -0.54 -14.35 15.38 5.56 0.09 -14.27 16 14 N -0.62 -11.05 3.08 -173.00 -0.53 -11.58 16 15 C 0.08 1.30 9.10 59.85 0.54 1.84 16 16 C 0.13 1.81 3.69 -67.12 -0.25 1.56 16 17 H 0.13 2.06 5.17 -51.93 -0.27 1.79 16 18 C -0.14 -1.74 6.92 -25.92 -0.18 -1.91 16 19 C -0.11 -1.15 4.26 -90.96 -0.39 -1.54 16 20 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 21 C 0.49 5.39 7.85 36.00 0.28 5.68 16 22 O -0.52 -7.22 16.66 -18.75 -0.31 -7.54 16 23 O -0.52 -4.31 13.42 -39.28 -0.53 -4.84 16 24 C -0.13 -1.48 7.03 -25.92 -0.18 -1.66 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 2.39 6.00 -51.93 -0.31 2.08 16 27 H 0.01 0.26 7.24 -51.93 -0.38 -0.11 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.80 6.13 -51.93 -0.32 0.48 16 31 H 0.07 1.17 7.55 -51.93 -0.39 0.78 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.36 6.26 -51.93 -0.32 1.04 16 34 H 0.41 1.69 9.10 45.56 0.41 2.10 16 35 H 0.09 0.99 6.58 -51.93 -0.34 0.65 16 36 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 297.18 15.07 4.48 4.48 Total: -1.00 -33.19 297.18 -5.54 -38.73 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.87 Total: 1.38 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -0.46 Total: 0.98 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.09 Total: -35.53 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.75 Total: -26.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.19 -5.54 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604060708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.067 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds