Wall clock time and date at job start Sun Mar 29 2020 23:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99847 * 2 1 4 4 H 1.48494 * 109.47591 * 270.00837 * 3 2 1 5 5 H 1.48512 * 109.46976 * 30.00613 * 3 2 1 6 6 H 1.48501 * 109.47186 * 150.00036 * 3 2 1 7 7 C 1.37877 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47118 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47159 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00262 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99928 * 179.72352 * 13 12 11 16 16 C 1.46499 * 120.00199 * 180.27479 * 15 13 12 17 17 C 1.52997 * 109.47555 * 180.02562 * 16 15 13 18 18 O 1.42906 * 112.84863 * 53.80616 * 17 16 15 19 19 C 1.53778 * 113.61625 * 282.50400 * 17 16 15 20 20 C 1.53787 * 87.08186 * 220.01471 * 19 17 16 21 21 C 1.53777 * 113.61546 * 185.00031 * 17 16 15 22 22 H 0.96995 * 120.00587 * 359.97438 * 1 2 3 23 23 H 1.08990 * 109.47277 * 59.99958 * 9 7 2 24 24 H 1.09002 * 109.46506 * 299.99678 * 9 7 2 25 25 H 1.08998 * 109.47269 * 60.00054 * 10 9 7 26 26 H 1.09003 * 109.46642 * 299.99381 * 10 9 7 27 27 H 1.09004 * 109.47131 * 59.99670 * 11 10 9 28 28 H 1.09000 * 109.47504 * 299.99974 * 11 10 9 29 29 H 1.09004 * 109.47066 * 60.00025 * 12 11 10 30 30 H 1.08994 * 109.47405 * 299.99855 * 12 11 10 31 31 H 0.97000 * 120.00317 * 0.28382 * 15 13 12 32 32 H 1.08998 * 109.47134 * 300.00670 * 16 15 13 33 33 H 1.09002 * 109.46857 * 59.99862 * 16 15 13 34 34 H 0.96705 * 113.99669 * 309.67402 * 18 17 16 35 35 H 1.09005 * 113.61327 * 334.55963 * 19 17 16 36 36 H 1.08991 * 113.62016 * 105.46848 * 19 17 16 37 37 H 1.08997 * 113.61359 * 270.88325 * 20 19 17 38 38 H 1.09000 * 113.68849 * 139.98690 * 20 19 17 39 39 H 1.08996 * 113.61480 * 254.52791 * 21 17 16 40 40 H 1.08998 * 113.61632 * 25.35301 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4747 -6.1499 -0.0005 13 6 1.7212 -7.4551 0.0007 14 8 0.5084 -7.4551 0.0016 15 7 2.3951 -8.6222 -0.0052 16 6 1.6627 -9.8910 -0.0100 17 6 2.6569 -11.0539 -0.0157 18 8 3.6093 -10.9748 1.0468 19 6 3.2881 -11.3181 -1.3928 20 6 3.1461 -12.8177 -1.0828 21 6 1.9902 -12.4337 -0.1438 22 1 -0.4851 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8902 24 1 0.6248 -2.5571 0.8898 25 1 2.8720 -3.6043 0.8894 26 1 2.8719 -3.6043 -0.8906 27 1 0.8534 -5.0450 -0.8896 28 1 0.8541 -5.0446 0.8903 29 1 3.1020 -6.0921 0.8890 30 1 3.1006 -6.0923 -0.8909 31 1 3.3651 -8.6223 -0.0061 32 1 1.0369 -9.9527 0.8803 33 1 1.0350 -9.9447 -0.8996 34 1 4.0489 -10.1164 1.1178 35 1 2.6711 -10.9844 -2.2272 36 1 4.3228 -10.9844 -1.4702 37 1 4.0073 -13.2399 -0.5650 38 1 2.8329 -13.4143 -1.9395 39 1 1.9773 -13.0005 0.7870 40 1 1.0178 -12.4048 -0.6354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588620607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:05 Heat of formation + Delta-G solvation = -94.696672 kcal Electronic energy + Delta-G solvation = -18333.624823 eV Core-core repulsion = 15341.040928 eV Total energy + Delta-G solvation = -2992.583895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51395 -39.23904 -35.25283 -34.95948 -34.38135 -32.62078 -30.07781 -28.25632 -26.22249 -25.48922 -23.26078 -22.06389 -20.47591 -20.14103 -19.97863 -17.64640 -16.56137 -16.25332 -16.03235 -15.83516 -15.35459 -15.20558 -14.51305 -14.44185 -13.90539 -13.47029 -13.34963 -12.78494 -12.61501 -12.38350 -11.97956 -11.72277 -11.67102 -11.58137 -11.32817 -10.98191 -10.77817 -10.54299 -10.50382 -10.41214 -10.17371 -9.84857 -9.61371 -9.27708 -9.22055 -8.97815 -8.30087 -5.94789 -3.97368 2.67515 2.96683 3.34258 3.40286 3.43447 3.51802 4.02581 4.21934 4.25660 4.39087 4.49281 4.83875 4.96183 5.15272 5.25279 5.28785 5.30855 5.36108 5.40629 5.43867 5.48270 5.59051 5.74605 5.84247 5.89100 6.13281 6.17974 6.30007 6.54288 6.83813 7.01582 7.10674 7.19897 7.31998 7.74562 7.90552 8.06612 8.19600 8.48299 9.10397 9.66255 11.16577 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.063678 B = 0.002706 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.609124 B =10346.505954 C =10537.529266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.532 6.532 15 N -0.740 5.740 16 C 0.102 3.898 17 C 0.094 3.906 18 O -0.537 6.537 19 C -0.165 4.165 20 C -0.135 4.135 21 C -0.123 4.123 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.395 0.605 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.377 0.623 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -25.143 -1.561 26.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.301 3.699 14 O -0.407 6.407 15 N -0.395 5.395 16 C -0.022 4.022 17 C 0.053 3.947 18 O -0.343 6.343 19 C -0.203 4.203 20 C -0.172 4.172 21 C -0.161 4.161 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.225 0.775 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.062 -25.638 -1.457 26.633 hybrid contribution 1.098 1.518 -0.103 1.877 sum 8.160 -24.120 -1.560 25.510 Atomic orbital electron populations 1.69972 1.06053 1.26518 1.50942 1.25046 0.94845 0.99244 0.95473 0.86607 0.79816 0.83590 0.78040 1.20712 1.21256 1.19927 1.21283 0.92973 0.91203 1.50389 0.92761 1.19099 0.94068 0.91278 0.97322 1.21649 0.99076 0.93986 1.00065 1.21457 0.97027 0.92716 1.02986 1.21803 1.00121 0.91909 1.04014 1.21134 0.88475 0.85473 0.74868 1.90718 1.14248 1.87592 1.48164 1.46019 1.09952 1.05788 1.77713 1.21906 0.94786 0.82201 1.03338 1.22546 0.89549 0.95104 0.87531 1.86533 1.56831 1.38849 1.52051 1.23640 1.01998 0.97335 0.97282 1.22756 0.98846 0.96155 0.99446 1.22993 0.98465 0.93768 1.00877 0.93038 0.96593 0.96582 0.93462 0.93478 0.91810 0.91776 0.89076 0.89093 0.77080 0.90755 0.90390 0.77451 0.89042 0.90758 0.89727 0.91105 0.90192 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 11 C -0.10 -1.85 4.50 -26.74 -0.12 -1.97 16 12 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 13 C 0.51 6.90 7.83 -10.98 -0.09 6.82 16 14 O -0.53 -9.62 15.98 5.55 0.09 -9.53 16 15 N -0.74 -6.83 5.33 -60.29 -0.32 -7.15 16 16 C 0.10 0.93 5.26 -4.04 -0.02 0.91 16 17 C 0.09 0.69 1.41 -89.81 -0.13 0.56 16 18 O -0.54 -4.25 13.41 -35.23 -0.47 -4.73 16 19 C -0.16 -1.04 7.47 -25.92 -0.19 -1.23 16 20 C -0.13 -0.83 8.02 -25.91 -0.21 -1.03 16 21 C -0.12 -0.82 7.47 -25.92 -0.19 -1.02 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.40 2.37 7.33 -40.82 -0.30 2.07 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.38 1.86 7.62 45.56 0.35 2.21 16 35 H 0.09 0.56 8.04 -51.93 -0.42 0.15 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -34.68 332.17 -8.02 -42.70 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.24 Total: -1.58 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.80 Total: -14.75 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.41 Total: -34.05 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.38 Total: -14.25 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.68 -8.02 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.999 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds