Wall clock time and date at job start Sun Mar 29 2020 23:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00443 * 2 1 4 4 O 1.20827 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00410 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.90757 * 59.64334 * 5 3 2 7 7 C 1.53995 * 109.91818 * 298.54573 * 5 3 2 8 8 C 1.54591 * 105.22889 * 239.37244 * 7 5 3 9 9 C 1.55103 * 102.84343 * 338.14984 * 8 7 5 10 10 N 1.47905 * 109.92066 * 180.95559 * 5 3 2 11 11 C 1.46899 * 110.99614 * 265.19645 * 10 5 3 12 12 H 1.09002 * 109.47662 * 297.39668 * 11 10 5 13 13 C 1.53001 * 109.47202 * 57.39873 * 11 10 5 14 14 C 1.53004 * 109.46752 * 177.39694 * 11 10 5 15 15 C 1.52999 * 109.47027 * 173.91722 * 14 11 10 16 16 C 1.50701 * 109.47182 * 184.06667 * 15 14 11 17 17 H 1.08004 * 120.00023 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47254 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47500 * 300.00279 * 20 18 16 24 24 H 1.08997 * 109.46417 * 300.00198 * 1 2 3 25 25 H 1.09001 * 109.47078 * 59.99919 * 1 2 3 26 26 H 1.08997 * 109.46798 * 180.02562 * 1 2 3 27 27 H 1.09004 * 110.30652 * 358.33589 * 7 5 3 28 28 H 1.08999 * 110.31082 * 120.40247 * 7 5 3 29 29 H 1.09001 * 110.72592 * 96.44410 * 8 7 5 30 30 H 1.08993 * 110.72723 * 219.73642 * 8 7 5 31 31 H 1.09001 * 110.59649 * 278.87143 * 9 8 7 32 32 H 1.08997 * 110.68691 * 155.78094 * 9 8 7 33 33 H 1.08998 * 109.46888 * 299.99436 * 13 11 10 34 34 H 1.09002 * 109.47359 * 60.00254 * 13 11 10 35 35 H 1.09001 * 109.47216 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47154 * 293.91888 * 14 11 10 37 37 H 1.08994 * 109.46928 * 53.91616 * 14 11 10 38 38 H 1.08990 * 109.47439 * 304.06946 * 15 14 11 39 39 H 1.09007 * 109.47282 * 64.06951 * 15 14 11 40 40 H 0.96996 * 120.00161 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9638 0.7772 -0.8852 7 6 4.1270 0.6111 1.2709 8 6 4.9230 1.7229 1.9921 9 6 5.2313 2.7237 0.8480 10 7 3.9969 2.6896 0.0227 11 6 4.2582 3.1827 -1.3361 12 1 5.0777 2.6153 -1.7773 13 6 3.0011 3.0118 -2.1913 14 6 4.6374 4.6639 -1.2770 15 6 5.0560 5.1391 -2.6697 16 6 5.5243 6.5695 -2.5927 17 1 5.5238 7.0876 -1.6451 18 6 5.9534 7.2167 -3.7320 19 7 5.9536 6.5860 -4.8861 20 14 6.5332 8.9898 -3.6366 21 1 7.6925 9.0826 -2.7131 22 1 6.9397 9.4512 -4.9884 23 1 5.4291 9.8452 -3.1324 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.3128 0.2576 1.9036 28 1 4.7863 -0.2157 1.0068 29 1 4.3142 2.1948 2.7633 30 1 5.8443 1.3243 2.4166 31 1 6.0914 2.3896 0.2677 32 1 5.4001 3.7240 1.2465 33 1 2.7310 1.9567 -2.2334 34 1 2.1816 3.5794 -1.7502 35 1 3.1948 3.3781 -3.1994 36 1 3.7801 5.2451 -0.9372 37 1 5.4664 4.7992 -0.5824 38 1 5.8662 4.5110 -3.0397 39 1 4.2052 5.0714 -3.3478 40 1 6.2558 7.0412 -5.6875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:43 Heat of formation + Delta-G solvation = -90.678105 kcal Electronic energy + Delta-G solvation = -19749.198857 eV Core-core repulsion = 16756.789220 eV Total energy + Delta-G solvation = -2992.409637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69479 -38.74602 -36.19109 -35.04062 -32.73039 -30.35555 -30.01917 -28.08537 -27.38915 -25.09217 -23.33283 -21.82617 -21.18196 -20.00945 -19.32025 -17.41763 -16.81777 -16.78656 -16.14965 -15.39638 -14.84838 -14.45163 -14.31073 -13.81084 -13.28961 -13.14699 -12.93743 -12.76685 -12.39409 -12.12665 -12.01156 -11.51591 -11.50803 -11.22948 -11.11931 -10.98099 -10.86935 -10.76483 -10.57712 -10.51136 -10.31903 -10.03867 -9.57840 -9.26745 -9.00282 -8.29883 -8.23909 -5.95604 -3.97236 2.36458 2.61596 3.36619 3.40528 3.43590 4.12813 4.48158 4.51898 4.57262 4.80845 5.00611 5.02741 5.09690 5.22201 5.38923 5.40169 5.46685 5.52977 5.56967 5.65774 5.72067 5.82606 5.94207 6.05320 6.11967 6.29643 6.38265 6.45624 6.68527 6.76323 6.81660 7.01752 7.22231 7.38752 7.73316 7.89335 7.94773 8.05069 8.48797 9.09619 9.66338 11.15829 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.004638 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.535944 B = 6035.735686 C = 6576.150727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.464 3.536 4 O -0.475 6.475 5 C 0.075 3.925 6 H 0.088 0.912 7 C -0.118 4.118 8 C -0.125 4.125 9 C 0.039 3.961 10 N -0.495 5.495 11 C 0.075 3.925 12 H 0.040 0.960 13 C -0.142 4.142 14 C -0.097 4.097 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.012 0.988 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 -15.656 11.670 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.304 3.696 4 O -0.358 6.358 5 C -0.035 4.035 6 H 0.105 0.895 7 C -0.156 4.156 8 C -0.163 4.163 9 C -0.088 4.088 10 N -0.221 5.221 11 C -0.032 4.032 12 H 0.058 0.942 13 C -0.199 4.199 14 C -0.135 4.135 15 C -0.014 4.014 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.279 -14.976 11.680 20.003 hybrid contribution 0.677 0.519 -0.553 1.016 sum -5.603 -14.456 11.128 19.084 Atomic orbital electron populations 1.23195 0.76759 1.03234 1.02517 1.86484 1.23062 1.34070 1.84900 1.23590 0.91713 0.81245 0.73078 1.90670 1.66405 1.36021 1.42728 1.21876 0.88179 0.92875 1.00608 0.89450 1.22352 1.00226 0.98291 0.94724 1.22570 1.00006 0.95666 0.98016 1.23259 0.91037 1.00674 0.93815 1.64408 1.29401 1.13988 1.14255 1.22049 0.96635 0.98567 0.85928 0.94179 1.21965 0.98056 0.99500 1.00421 1.21656 1.00036 0.90903 1.00946 1.19123 0.96327 0.95669 0.90318 1.21224 1.42637 0.97712 0.94057 0.92765 1.25009 0.95918 0.98001 0.95492 1.69953 1.47889 1.36982 0.98834 0.86672 0.79183 0.85250 0.76974 1.20292 1.21344 1.20236 0.92101 0.91984 0.88427 0.90617 0.90132 0.90621 0.90570 0.93118 0.89013 0.95171 0.91062 0.91152 0.92482 0.93269 0.96948 0.96249 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.55 10.51 -39.25 -0.41 -4.96 16 3 C 0.46 6.81 5.62 36.00 0.20 7.01 16 4 O -0.47 -8.46 14.26 -18.75 -0.27 -8.73 16 5 C 0.07 1.01 2.40 -67.79 -0.16 0.85 16 6 H 0.09 1.13 7.42 -51.93 -0.39 0.74 16 7 C -0.12 -1.22 6.52 -25.38 -0.17 -1.38 16 8 C -0.12 -1.29 7.08 -24.78 -0.18 -1.47 16 9 C 0.04 0.53 5.63 -1.81 -0.01 0.52 16 10 N -0.49 -7.90 4.32 -215.93 -0.93 -8.84 16 11 C 0.08 1.38 1.82 -67.71 -0.12 1.26 16 12 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 13 C -0.14 -2.61 7.68 37.16 0.29 -2.33 16 14 C -0.10 -2.11 4.69 -26.73 -0.13 -2.23 16 15 C 0.02 0.61 4.65 -27.88 -0.13 0.48 16 16 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.75 7.66 -51.93 -0.40 0.35 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 32 H 0.09 1.28 7.55 -51.93 -0.39 0.89 16 33 H 0.03 0.49 6.06 -51.93 -0.31 0.18 16 34 H 0.07 1.41 7.13 -51.93 -0.37 1.04 16 35 H 0.07 1.37 6.69 -51.93 -0.35 1.02 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 1.03 6.81 -51.93 -0.35 0.68 16 38 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.02 0.54 6.80 -51.93 -0.35 0.18 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -32.57 317.65 -7.52 -40.09 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.66 Total: -3.20 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.25 Total: -9.60 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.20 Total: -35.39 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.68 Total: -13.69 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.57 -7.52 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.586 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds