Wall clock time and date at job start Sun Mar 29 2020 23:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00443 * 2 1 4 4 O 1.20827 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00410 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.90757 * 59.64334 * 5 3 2 7 7 C 1.53995 * 109.91818 * 298.54573 * 5 3 2 8 8 C 1.54591 * 105.22889 * 239.37244 * 7 5 3 9 9 C 1.55103 * 102.84343 * 338.14984 * 8 7 5 10 10 N 1.47905 * 109.92066 * 180.95559 * 5 3 2 11 11 C 1.46899 * 110.99614 * 265.19645 * 10 5 3 12 12 H 1.09002 * 109.47662 * 297.39668 * 11 10 5 13 13 C 1.53001 * 109.47202 * 57.39873 * 11 10 5 14 14 C 1.53004 * 109.46752 * 177.39694 * 11 10 5 15 15 C 1.52999 * 109.47027 * 173.91722 * 14 11 10 16 16 C 1.50701 * 109.47182 * 184.06667 * 15 14 11 17 17 H 1.08004 * 120.00023 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00097 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00168 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99833 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.47254 * 60.00075 * 20 18 16 22 22 H 1.48505 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47500 * 300.00279 * 20 18 16 24 24 H 1.08997 * 109.46417 * 300.00198 * 1 2 3 25 25 H 1.09001 * 109.47078 * 59.99919 * 1 2 3 26 26 H 1.08997 * 109.46798 * 180.02562 * 1 2 3 27 27 H 1.09004 * 110.30652 * 358.33589 * 7 5 3 28 28 H 1.08999 * 110.31082 * 120.40247 * 7 5 3 29 29 H 1.09001 * 110.72592 * 96.44410 * 8 7 5 30 30 H 1.08993 * 110.72723 * 219.73642 * 8 7 5 31 31 H 1.09001 * 110.59649 * 278.87143 * 9 8 7 32 32 H 1.08997 * 110.68691 * 155.78094 * 9 8 7 33 33 H 1.08998 * 109.46888 * 299.99436 * 13 11 10 34 34 H 1.09002 * 109.47359 * 60.00254 * 13 11 10 35 35 H 1.09001 * 109.47216 * 179.97438 * 13 11 10 36 36 H 1.09004 * 109.47154 * 293.91888 * 14 11 10 37 37 H 1.08994 * 109.46928 * 53.91616 * 14 11 10 38 38 H 1.08990 * 109.47439 * 304.06946 * 15 14 11 39 39 H 1.09007 * 109.47282 * 64.06951 * 15 14 11 40 40 H 0.96996 * 120.00161 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9638 0.7772 -0.8852 7 6 4.1270 0.6111 1.2709 8 6 4.9230 1.7229 1.9921 9 6 5.2313 2.7237 0.8480 10 7 3.9969 2.6896 0.0227 11 6 4.2582 3.1827 -1.3361 12 1 5.0777 2.6153 -1.7773 13 6 3.0011 3.0118 -2.1913 14 6 4.6374 4.6639 -1.2770 15 6 5.0560 5.1391 -2.6697 16 6 5.5243 6.5695 -2.5927 17 1 5.5238 7.0876 -1.6451 18 6 5.9534 7.2167 -3.7320 19 7 5.9536 6.5860 -4.8861 20 14 6.5332 8.9898 -3.6366 21 1 7.6925 9.0826 -2.7131 22 1 6.9397 9.4512 -4.9884 23 1 5.4291 9.8452 -3.1324 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.3128 0.2576 1.9036 28 1 4.7863 -0.2157 1.0068 29 1 4.3142 2.1948 2.7633 30 1 5.8443 1.3243 2.4166 31 1 6.0914 2.3896 0.2677 32 1 5.4001 3.7240 1.2465 33 1 2.7310 1.9567 -2.2334 34 1 2.1816 3.5794 -1.7502 35 1 3.1948 3.3781 -3.1994 36 1 3.7801 5.2451 -0.9372 37 1 5.4664 4.7992 -0.5824 38 1 5.8662 4.5110 -3.0397 39 1 4.2052 5.0714 -3.3478 40 1 6.2558 7.0412 -5.6875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:49:43 Heat of formation + Delta-G solvation = -111.274282 kcal Electronic energy + Delta-G solvation = -19750.091974 eV Core-core repulsion = 16756.789220 eV Total energy + Delta-G solvation = -2993.302754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.80228 -39.88677 -37.30301 -36.63408 -34.71528 -31.89955 -31.18033 -29.51717 -28.29810 -27.00526 -24.58303 -23.47981 -22.18920 -21.29373 -20.75615 -18.64175 -18.46833 -17.87687 -17.60999 -16.63370 -16.41708 -15.91568 -15.74877 -14.97770 -14.55213 -14.39117 -14.26623 -14.13206 -13.84347 -13.62665 -13.30382 -12.99978 -12.88951 -12.71517 -12.44937 -12.41001 -12.36808 -12.07461 -12.02568 -11.74987 -11.66041 -11.48184 -11.28731 -11.18985 -11.04857 -10.52992 -9.46738 -8.19548 -6.30248 1.25105 1.39439 1.42768 1.50612 1.63759 2.41133 2.96316 3.13443 3.53165 3.60814 3.88745 4.01585 4.03620 4.16360 4.27445 4.33753 4.33933 4.38960 4.56160 4.68041 4.70658 4.76525 4.85158 4.90573 4.91807 4.96859 5.03063 5.09626 5.15143 5.27578 5.30494 5.41971 5.51309 5.75089 5.85157 5.86827 6.01656 6.27687 6.85466 6.86672 7.38501 8.92118 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.004638 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.535944 B = 6035.735686 C = 6576.150727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.465 3.535 4 O -0.515 6.515 5 C 0.068 3.932 6 H 0.097 0.903 7 C -0.110 4.110 8 C -0.114 4.114 9 C 0.032 3.968 10 N -0.512 5.512 11 C 0.086 3.914 12 H 0.043 0.957 13 C -0.131 4.131 14 C -0.082 4.082 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.056 0.944 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.964 3.036 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.270 1.270 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.041 0.959 37 H 0.055 0.945 38 H -0.008 1.008 39 H -0.005 1.005 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -16.724 13.140 21.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.042 4.042 6 H 0.115 0.885 7 C -0.148 4.148 8 C -0.152 4.152 9 C -0.095 4.095 10 N -0.238 5.238 11 C -0.022 4.022 12 H 0.061 0.939 13 C -0.188 4.188 14 C -0.120 4.120 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.788 3.212 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.195 1.195 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.011 0.989 39 H 0.013 0.987 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.711 -16.074 13.171 21.552 hybrid contribution 0.434 0.786 -1.016 1.356 sum -5.276 -15.288 12.156 20.232 Atomic orbital electron populations 1.23498 0.75108 1.05582 1.02157 1.86476 1.24649 1.32659 1.84233 1.23889 0.92233 0.81264 0.71945 1.90662 1.67321 1.37391 1.44801 1.22054 0.87649 0.91567 1.02910 0.88539 1.22400 1.00772 0.98625 0.92964 1.22553 1.01302 0.94696 0.96648 1.23365 0.90199 1.01267 0.94650 1.64268 1.30863 1.16199 1.12474 1.21751 0.96332 0.96329 0.87812 0.93950 1.21819 0.97599 1.00294 0.99135 1.21388 0.99440 0.93217 0.97964 1.18979 0.94519 0.94769 0.92435 1.21656 1.43090 0.99045 0.94439 0.92527 1.25945 0.95803 1.02884 0.94965 1.70083 1.48546 1.39026 0.99600 0.85526 0.79025 0.79248 0.77407 1.18996 1.20654 1.19479 0.92142 0.92772 0.84707 0.89871 0.87382 0.90952 0.87651 0.92693 0.90144 0.93228 0.92857 0.93072 0.93988 0.92640 0.98918 0.98712 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.71 16 2 O -0.36 -8.30 10.51 -51.40 -0.54 -8.84 16 3 C 0.46 13.14 5.62 71.23 0.40 13.54 16 4 O -0.51 -18.41 14.26 21.96 0.31 -18.10 16 5 C 0.07 1.72 2.40 44.31 0.11 1.83 16 6 H 0.10 2.28 7.42 -2.39 -0.02 2.26 16 7 C -0.11 -1.90 6.52 31.47 0.21 -1.70 16 8 C -0.11 -2.04 7.08 31.86 0.23 -1.81 16 9 C 0.03 0.81 5.63 86.71 0.49 1.30 16 10 N -0.51 -16.05 4.32 -837.06 -3.61 -19.66 16 11 C 0.09 3.18 1.82 44.92 0.08 3.26 16 12 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 13 C -0.13 -4.96 7.68 71.98 0.55 -4.41 16 14 C -0.08 -3.65 4.69 30.60 0.14 -3.51 16 15 C 0.03 1.66 4.65 29.85 0.14 1.80 16 16 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16 17 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.10 5.46 84.66 0.46 0.57 16 19 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 20 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 25 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 26 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.35 7.92 -2.39 -0.02 1.33 16 32 H 0.08 2.20 7.55 -2.39 -0.02 2.18 16 33 H 0.05 1.64 6.06 -2.39 -0.01 1.62 16 34 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 35 H 0.05 2.09 6.69 -2.39 -0.02 2.07 16 36 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.05 2.36 6.81 -2.39 -0.02 2.34 16 38 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H -0.01 -0.32 6.80 -2.38 -0.02 -0.34 16 40 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -71.53 317.65 3.70 -67.83 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.00 Total: 8.16 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 4.23 Total: -19.23 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -3.33 Total: -77.09 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.23 Total: -26.94 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.53 3.70 -67.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.446 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds