Wall clock time and date at job start Sun Mar 29 2020 23:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47166 * 2 1 4 4 O 1.42901 * 109.46723 * 240.00774 * 2 1 3 5 5 C 1.42895 * 114.00313 * 90.00134 * 4 2 1 6 6 C 1.53003 * 109.47298 * 180.02562 * 5 4 2 7 7 C 1.53001 * 117.51964 * 116.28202 * 6 5 4 8 8 C 1.52999 * 60.00190 * 107.47982 * 7 6 5 9 9 C 1.50700 * 109.47233 * 120.00674 * 2 1 3 10 10 O 1.21287 * 119.99794 * 120.00049 * 9 2 1 11 11 N 1.34767 * 120.00043 * 299.99638 * 9 2 1 12 12 C 1.46500 * 120.00388 * 179.97438 * 11 9 2 13 13 C 1.52998 * 109.47635 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47328 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.47226 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99604 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99699 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00269 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47061 * 89.99761 * 19 17 15 21 21 H 1.48498 * 109.46980 * 209.99831 * 19 17 15 22 22 H 1.48505 * 109.46959 * 329.99879 * 19 17 15 23 23 H 1.08999 * 109.46915 * 299.99537 * 1 2 3 24 24 H 1.08993 * 109.47313 * 59.98993 * 1 2 3 25 25 H 1.08996 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47440 * 59.99511 * 5 4 2 27 27 H 1.09005 * 109.46905 * 299.99670 * 5 4 2 28 28 H 1.09002 * 115.54973 * 330.57985 * 6 5 4 29 29 H 1.09001 * 117.49733 * 214.97413 * 7 6 5 30 30 H 1.08995 * 117.49577 * 359.97438 * 7 6 5 31 31 H 1.09004 * 117.50150 * 252.51496 * 8 7 6 32 32 H 1.09004 * 117.49681 * 107.48417 * 8 7 6 33 33 H 0.97008 * 120.00130 * 0.02562 * 11 9 2 34 34 H 1.08999 * 109.47197 * 300.00531 * 12 11 9 35 35 H 1.09004 * 109.47038 * 59.99798 * 12 11 9 36 36 H 1.09009 * 109.46757 * 300.00050 * 13 12 11 37 37 H 1.08999 * 109.46885 * 59.99441 * 13 12 11 38 38 H 1.09009 * 109.46812 * 299.99489 * 14 13 12 39 39 H 1.09004 * 109.47622 * 59.99450 * 14 13 12 40 40 H 0.96999 * 120.00140 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.2000 0.1831 -2.2941 6 6 2.7077 -0.6405 -3.4794 7 6 1.8109 -0.7269 -4.7160 8 6 3.0875 0.1157 -4.7541 9 6 2.0323 -0.7105 1.2304 10 8 2.7297 -1.6966 1.1189 11 7 1.7069 -0.2502 2.4545 12 6 2.1947 -0.9412 3.6506 13 6 1.6844 -0.2204 4.8999 14 6 2.1945 -0.9418 6.1490 15 6 1.6913 -0.2321 7.3796 16 1 1.0702 0.6458 7.2806 17 6 2.0239 -0.7037 8.6318 18 7 1.5851 -0.0841 9.7057 19 14 3.0975 -2.2227 8.8030 20 1 4.5253 -1.8170 8.8491 21 1 2.7458 -2.9389 10.0554 22 1 2.8750 -3.1197 7.6406 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8898 25 1 -0.3634 -1.0276 -0.0005 26 1 2.9318 0.9515 -2.0450 27 1 1.2536 0.6549 -2.5588 28 1 3.2965 -1.5210 -3.2221 29 1 1.8098 -1.6643 -5.2723 30 1 0.8588 -0.1973 -4.6852 31 1 2.9753 1.1999 -4.7484 32 1 3.9262 -0.2674 -5.3355 33 1 1.1489 0.5383 2.5436 34 1 1.8310 -1.9688 3.6503 35 1 3.2848 -0.9418 3.6507 36 1 2.0479 0.8073 4.9004 37 1 0.5944 -0.2203 4.8995 38 1 1.8313 -1.9696 6.1488 39 1 3.2845 -0.9416 6.1492 40 1 1.8188 -0.4161 10.5867 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171498430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:21:11 Heat of formation + Delta-G solvation = -77.034401 kcal Electronic energy + Delta-G solvation = -18252.302919 eV Core-core repulsion = 15260.484917 eV Total energy + Delta-G solvation = -2991.818001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.162 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.96549 -38.43698 -36.80877 -35.46002 -33.43367 -32.09384 -30.95498 -27.40169 -27.24461 -24.40734 -22.77185 -22.52821 -21.13475 -20.71738 -19.81471 -17.47814 -17.33384 -16.62922 -16.08524 -15.63757 -15.27108 -15.03360 -14.71730 -14.21989 -14.00223 -13.63186 -13.18384 -12.82880 -12.71331 -12.57515 -12.03061 -11.96448 -11.92950 -11.81950 -11.28055 -11.09010 -10.90040 -10.82778 -10.68073 -10.17835 -9.98516 -9.89024 -9.75630 -9.38400 -9.23481 -8.88092 -8.56321 -6.07200 -4.05994 2.65748 2.79850 3.31113 3.38694 3.40505 3.43252 3.72529 4.42052 4.43914 4.51032 4.57296 4.67669 4.70920 4.82980 4.93494 5.10009 5.24612 5.26942 5.28577 5.31515 5.42085 5.50646 5.56327 5.64516 5.72031 5.83301 5.86572 6.00225 6.32803 6.43120 6.65800 6.77397 6.87490 7.21684 7.35132 7.60613 7.75532 8.31321 8.49251 8.96412 9.55086 11.05973 Molecular weight = 255.16amu Principal moments of inertia in cm(-1) A = 0.057170 B = 0.002871 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.647597 B = 9751.726933 C =10034.298779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.509 3.491 10 O -0.524 6.524 11 N -0.724 5.724 12 C 0.115 3.885 13 C -0.113 4.113 14 C -0.012 4.012 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 3.039 -26.572 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.104 0.896 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.171 4.171 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.293 3.707 10 O -0.399 6.399 11 N -0.377 5.377 12 C -0.008 4.008 13 C -0.151 4.151 14 C -0.050 4.050 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.233 0.767 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.584 2.098 -26.460 26.550 hybrid contribution 0.214 -0.056 0.335 0.401 sum -0.370 2.042 -26.125 26.208 Atomic orbital electron populations 1.22244 0.93563 1.03975 1.03072 1.21906 0.95071 0.96292 0.85778 0.89622 1.88047 1.86523 1.33922 1.18671 1.22110 0.98974 0.92054 0.85460 1.22127 1.04106 1.02551 0.88276 1.23071 0.94907 1.02168 1.01277 1.22981 0.99361 0.98836 0.99950 1.20323 0.80878 0.85139 0.84344 1.90720 1.36953 1.25676 1.86549 1.46100 1.53715 1.32229 1.05637 1.21671 0.99294 0.96605 0.83193 1.21706 1.00698 0.99585 0.93086 1.19510 0.96207 0.96284 0.92957 1.21091 1.32341 1.13512 0.89060 0.91009 1.25032 0.95716 0.96901 0.95863 1.69911 1.45799 1.40546 0.97925 0.86772 0.81034 0.83745 0.77736 1.20246 1.21363 1.18872 0.90696 0.91400 0.90964 0.92724 0.93022 0.86585 0.88567 0.88682 0.88662 0.88348 0.76685 0.91691 0.91724 0.92101 0.92042 0.96275 0.96719 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 9.42 37.16 0.35 -1.10 16 2 C 0.07 0.77 3.14 -27.88 -0.09 0.69 16 3 H 0.09 0.71 7.79 -51.93 -0.40 0.31 16 4 O -0.35 -4.49 9.52 -55.14 -0.52 -5.02 16 5 C 0.09 0.82 6.03 37.16 0.22 1.05 16 6 C -0.15 -1.33 6.06 -90.61 -0.55 -1.87 16 7 C -0.18 -1.24 10.18 -26.73 -0.27 -1.51 16 8 C -0.17 -1.14 10.25 -26.73 -0.27 -1.41 16 9 C 0.51 7.55 7.23 -10.99 -0.08 7.47 16 10 O -0.52 -10.27 16.50 -14.36 -0.24 -10.51 16 11 N -0.72 -9.79 5.45 -60.29 -0.33 -10.12 16 12 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 13 C -0.11 -2.07 5.27 -26.73 -0.14 -2.21 16 14 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 15 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 19 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 24 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.44 8.08 -51.93 -0.42 0.03 16 27 H 0.05 0.38 7.60 -51.93 -0.39 -0.02 16 28 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 4.15 7.89 -40.82 -0.32 3.83 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.45 7.20 -51.92 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -33.96 335.25 -8.25 -42.21 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.92 Total: -1.23 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.39 Total: -10.56 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.45 Total: -37.02 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.76 Total: -15.53 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.96 -8.25 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171498430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.828 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds