Wall clock time and date at job start Sun Mar 29 2020 23:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46655 * 2 1 4 4 C 1.46955 * 110.99411 * 189.99876 * 3 2 1 5 5 C 1.53057 * 109.36232 * 183.18628 * 4 3 2 6 6 N 1.46961 * 109.36367 * 301.59692 * 5 4 3 7 7 C 1.46896 * 111.00124 * 183.18417 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00033 * 7 6 5 9 9 N 1.46498 * 109.47059 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 7 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 8 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 8 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12 20 20 C 1.46956 * 110.87704 * 59.32174 * 6 5 4 21 21 C 1.46954 * 110.99727 * 313.79424 * 3 2 1 22 22 H 1.08998 * 109.47739 * 300.00013 * 1 2 3 23 23 H 1.09003 * 109.46954 * 60.00397 * 1 2 3 24 24 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47457 * 239.99964 * 2 1 3 26 26 H 1.08995 * 109.47111 * 119.99273 * 2 1 3 27 27 H 1.08999 * 109.49196 * 63.22061 * 4 3 2 28 28 H 1.08994 * 109.49111 * 303.15020 * 4 3 2 29 29 H 1.09000 * 109.48760 * 181.62993 * 5 4 3 30 30 H 1.09000 * 109.48934 * 61.56341 * 5 4 3 31 31 H 1.09004 * 109.46774 * 50.00232 * 7 6 5 32 32 H 1.09000 * 109.47249 * 290.00858 * 7 6 5 33 33 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 34 34 H 1.08994 * 109.46974 * 300.00526 * 8 7 6 35 35 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 36 36 H 0.96991 * 119.99824 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.49195 * 60.64478 * 20 6 5 38 38 H 1.08994 * 109.48776 * 180.71314 * 20 6 5 39 39 H 1.09000 * 109.48939 * 296.78217 * 21 3 2 40 40 H 1.09000 * 109.49145 * 56.85109 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4689 1.4312 -0.2382 5 6 3.9515 2.8812 -0.1517 6 7 3.2318 3.6942 -1.1421 7 6 3.7213 5.0792 -1.1421 8 6 3.1348 5.8274 -2.3409 9 7 3.6235 7.2084 -2.3412 10 6 3.2405 8.0585 -3.3144 11 8 2.4847 7.6803 -4.1900 12 6 3.7335 9.4367 -3.3182 13 1 4.4046 9.7723 -2.5414 14 6 3.3359 10.3199 -4.3298 15 7 2.5244 9.9138 -5.2700 16 14 3.9646 12.0790 -4.3341 17 1 4.8627 12.2866 -3.1699 18 1 4.7159 12.3329 -5.5897 19 1 2.8156 13.0156 -4.2467 20 6 1.7824 3.6479 -0.9038 21 6 1.2998 2.1980 -0.9903 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.6874 1.0338 -1.2294 28 1 3.9805 0.8322 0.5151 29 1 5.0213 2.9212 -0.3567 30 1 3.7576 3.2700 0.8479 31 1 4.8092 5.0799 -1.2102 32 1 3.4147 5.5729 -0.2201 33 1 2.0469 5.8266 -2.2728 34 1 3.4415 5.3335 -3.2628 35 1 4.2262 7.5098 -1.6435 36 1 2.2487 10.5256 -5.9703 37 1 1.5639 4.0454 0.0873 38 1 1.2708 4.2469 -1.6571 39 1 1.4937 1.8092 -1.9900 40 1 0.2300 2.1580 -0.7854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229009708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:41 Heat of formation + Delta-G solvation = -28.481580 kcal Electronic energy + Delta-G solvation = -18983.994344 eV Core-core repulsion = 16026.574502 eV Total energy + Delta-G solvation = -2957.419842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.51902 -37.37037 -36.11018 -33.35991 -32.30070 -31.37415 -30.66700 -28.45702 -26.35626 -24.92932 -23.96066 -21.89363 -21.28314 -19.79633 -19.60313 -17.19029 -16.49951 -15.49168 -15.30453 -15.12626 -14.93781 -14.86907 -14.46624 -14.06673 -13.90873 -13.49372 -13.20480 -12.53626 -12.35558 -12.19861 -12.09591 -11.76035 -11.41472 -11.31035 -11.26060 -11.09885 -11.09040 -10.77300 -10.70208 -10.44077 -10.33980 -10.16423 -8.83211 -8.52409 -8.25621 -7.58288 -7.45223 -6.15849 -4.61038 3.14782 3.22673 3.27259 3.71082 3.83123 4.15444 4.62419 4.71538 4.78573 4.89965 4.99068 5.10335 5.20507 5.22281 5.30510 5.34513 5.38731 5.47855 5.54744 5.62954 5.66604 5.75196 5.81202 5.84252 5.86643 5.90761 6.01215 6.03026 6.55316 6.62792 6.85315 6.86154 7.13064 7.15796 7.46224 7.96454 8.14121 8.36250 9.05381 9.57414 10.63446 10.82294 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.003397 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.142650 B = 8241.009442 C = 8583.374723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.058 3.942 6 N -0.537 5.537 7 C 0.049 3.951 8 C 0.138 3.862 9 N -0.769 5.769 10 C 0.555 3.445 11 O -0.581 6.581 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.052 3.948 21 C 0.052 3.948 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.379 0.621 36 H 0.267 0.733 37 H 0.041 0.959 38 H 0.088 0.912 39 H 0.043 0.957 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -16.219 11.681 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.070 4.070 5 C -0.070 4.070 6 N -0.262 5.262 7 C -0.079 4.079 8 C 0.012 3.988 9 N -0.425 5.425 10 C 0.359 3.641 11 O -0.463 6.463 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.076 4.076 21 C -0.076 4.076 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.210 0.790 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.320 -16.475 10.851 19.730 hybrid contribution 0.644 0.960 0.357 1.210 sum 0.324 -15.514 11.208 19.142 Atomic orbital electron populations 1.21939 0.95012 1.01826 1.02684 1.22063 0.95816 0.89168 1.00614 1.62270 1.04147 1.10651 1.49722 1.22145 0.88032 0.96645 1.00175 1.22132 0.98215 0.92683 0.93993 1.62048 1.04119 1.11090 1.48969 1.22278 1.00198 0.87304 0.98107 1.20783 0.97748 0.83950 0.96298 1.46092 1.54184 1.10141 1.32058 1.18215 0.80744 0.85462 0.79707 1.90600 1.39194 1.78306 1.38229 1.20920 1.30805 0.94515 1.12009 0.91415 1.25718 0.93464 0.99773 0.94327 1.70036 1.25173 1.35092 1.09430 0.86319 0.79137 0.82521 0.78773 1.18807 1.20183 1.20191 1.22269 0.88435 0.96149 1.00740 1.22290 0.98512 0.93010 0.93747 0.91792 0.92141 0.92263 0.94929 0.90869 0.93921 0.90530 0.90280 0.94125 0.90574 0.94566 0.93510 0.92666 0.79033 0.92197 0.94068 0.89373 0.93899 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.17 37.16 0.34 -0.88 16 2 C 0.05 0.45 6.00 -3.82 -0.02 0.43 16 3 N -0.54 -5.86 4.86 -234.46 -1.14 -7.00 16 4 C 0.06 0.61 5.58 -3.76 -0.02 0.59 16 5 C 0.06 0.67 5.61 -3.76 -0.02 0.65 16 6 N -0.54 -7.46 4.71 -234.46 -1.10 -8.57 16 7 C 0.05 0.74 5.07 -3.83 -0.02 0.72 16 8 C 0.14 2.74 5.61 -4.04 -0.02 2.72 16 9 N -0.77 -17.59 5.55 -61.72 -0.34 -17.94 16 10 C 0.56 16.16 7.75 -12.99 -0.10 16.06 16 11 O -0.58 -19.28 15.02 5.20 0.08 -19.20 16 12 C -0.55 -15.64 9.54 -35.63 -0.34 -15.98 16 13 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 14 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 15 N -0.77 -23.40 11.83 55.55 0.66 -22.74 16 16 Si 0.91 20.34 29.56 -169.99 -5.02 15.31 16 17 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 C 0.05 0.70 5.41 -3.76 -0.02 0.68 16 21 C 0.05 0.61 4.93 -3.77 -0.02 0.59 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.49 6.26 -51.93 -0.33 0.17 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 32 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.05 0.99 6.49 -51.93 -0.34 0.65 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.38 7.53 8.45 -40.82 -0.35 7.18 16 36 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.29 6.34 -51.93 -0.33 0.96 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.87 5.99 -51.93 -0.31 0.56 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -34.42 318.26 -9.10 -43.52 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.68 Total: 3.90 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.34 Total: 7.92 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.93 Total: -56.25 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.08 Total: -19.20 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.42 -9.10 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229009708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.037 kcal (2) G-P(sol) polarization free energy of solvation -34.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds