Wall clock time and date at job start Sun Mar 29 2020 23:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46655 * 2 1 4 4 C 1.46955 * 110.99411 * 189.99876 * 3 2 1 5 5 C 1.53057 * 109.36232 * 183.18628 * 4 3 2 6 6 N 1.46961 * 109.36367 * 301.59692 * 5 4 3 7 7 C 1.46896 * 111.00124 * 183.18417 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00033 * 7 6 5 9 9 N 1.46498 * 109.47059 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 7 11 11 O 1.21693 * 120.00014 * 0.28042 * 10 9 8 12 12 C 1.46373 * 120.00147 * 180.27610 * 10 9 8 13 13 H 1.08002 * 120.00141 * 0.02562 * 12 10 9 14 14 C 1.40050 * 120.00087 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00151 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99913 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46768 * 120.00068 * 16 14 12 19 19 H 1.48498 * 109.47283 * 240.00320 * 16 14 12 20 20 C 1.46956 * 110.87704 * 59.32174 * 6 5 4 21 21 C 1.46954 * 110.99727 * 313.79424 * 3 2 1 22 22 H 1.08998 * 109.47739 * 300.00013 * 1 2 3 23 23 H 1.09003 * 109.46954 * 60.00397 * 1 2 3 24 24 H 1.09003 * 109.46760 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47457 * 239.99964 * 2 1 3 26 26 H 1.08995 * 109.47111 * 119.99273 * 2 1 3 27 27 H 1.08999 * 109.49196 * 63.22061 * 4 3 2 28 28 H 1.08994 * 109.49111 * 303.15020 * 4 3 2 29 29 H 1.09000 * 109.48760 * 181.62993 * 5 4 3 30 30 H 1.09000 * 109.48934 * 61.56341 * 5 4 3 31 31 H 1.09004 * 109.46774 * 50.00232 * 7 6 5 32 32 H 1.09000 * 109.47249 * 290.00858 * 7 6 5 33 33 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 34 34 H 1.08994 * 109.46974 * 300.00526 * 8 7 6 35 35 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 36 36 H 0.96991 * 119.99824 * 179.97438 * 15 14 12 37 37 H 1.08999 * 109.49195 * 60.64478 * 20 6 5 38 38 H 1.08994 * 109.48776 * 180.71314 * 20 6 5 39 39 H 1.09000 * 109.48939 * 296.78217 * 21 3 2 40 40 H 1.09000 * 109.49145 * 56.85109 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4689 1.4312 -0.2382 5 6 3.9515 2.8812 -0.1517 6 7 3.2318 3.6942 -1.1421 7 6 3.7213 5.0792 -1.1421 8 6 3.1348 5.8274 -2.3409 9 7 3.6235 7.2084 -2.3412 10 6 3.2405 8.0585 -3.3144 11 8 2.4847 7.6803 -4.1900 12 6 3.7335 9.4367 -3.3182 13 1 4.4046 9.7723 -2.5414 14 6 3.3359 10.3199 -4.3298 15 7 2.5244 9.9138 -5.2700 16 14 3.9646 12.0790 -4.3341 17 1 4.8627 12.2866 -3.1699 18 1 4.7159 12.3329 -5.5897 19 1 2.8156 13.0156 -4.2467 20 6 1.7824 3.6479 -0.9038 21 6 1.2998 2.1980 -0.9903 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 3.6874 1.0338 -1.2294 28 1 3.9805 0.8322 0.5151 29 1 5.0213 2.9212 -0.3567 30 1 3.7576 3.2700 0.8479 31 1 4.8092 5.0799 -1.2102 32 1 3.4147 5.5729 -0.2201 33 1 2.0469 5.8266 -2.2728 34 1 3.4415 5.3335 -3.2628 35 1 4.2262 7.5098 -1.6435 36 1 2.2487 10.5256 -5.9703 37 1 1.5639 4.0454 0.0873 38 1 1.2708 4.2469 -1.6571 39 1 1.4937 1.8092 -1.9900 40 1 0.2300 2.1580 -0.7854 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229009708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:40 Heat of formation + Delta-G solvation = -56.620259 kcal Electronic energy + Delta-G solvation = -18985.214529 eV Core-core repulsion = 16026.574502 eV Total energy + Delta-G solvation = -2958.640027 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51812 -39.36377 -37.31474 -35.16134 -34.42405 -32.40880 -31.66126 -29.92525 -28.14036 -26.24712 -24.95594 -23.01659 -22.37719 -21.70701 -20.71784 -19.20914 -17.65363 -17.30348 -16.60246 -16.38372 -16.02419 -15.94910 -15.73203 -15.44899 -15.37060 -14.97523 -14.34409 -14.24094 -13.85576 -13.35936 -13.07507 -13.03348 -12.83908 -12.66984 -12.64910 -12.46887 -12.31030 -12.23646 -11.99434 -11.96884 -11.63794 -11.50102 -10.94663 -9.89459 -9.50365 -9.45206 -9.26635 -8.29570 -6.86170 1.41103 1.41384 1.59697 2.24348 2.46860 2.63624 2.91835 3.39918 3.61124 3.84264 3.89385 4.00565 4.12100 4.17578 4.25758 4.35712 4.44013 4.46250 4.51806 4.56718 4.60355 4.79396 4.86045 4.89253 4.92973 4.98463 5.01490 5.08664 5.14029 5.29902 5.32295 5.85569 5.89732 5.95501 6.12697 6.15168 6.23833 6.26717 6.86390 7.54475 8.48646 8.67233 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.053818 B = 0.003397 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.142650 B = 8241.009442 C = 8583.374723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.050 3.950 3 N -0.549 5.549 4 C 0.060 3.940 5 C 0.059 3.941 6 N -0.550 5.550 7 C 0.067 3.933 8 C 0.144 3.856 9 N -0.755 5.755 10 C 0.536 3.464 11 O -0.634 6.634 12 C -0.572 4.572 13 H 0.090 0.910 14 C 0.026 3.974 15 N -0.823 5.823 16 Si 1.002 2.998 17 H -0.245 1.245 18 H -0.269 1.269 19 H -0.269 1.269 20 C 0.053 3.947 21 C 0.059 3.941 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.030 0.970 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -16.060 13.529 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.077 4.077 3 N -0.275 5.275 4 C -0.068 4.068 5 C -0.069 4.069 6 N -0.275 5.275 7 C -0.061 4.061 8 C 0.019 3.981 9 N -0.410 5.410 10 C 0.340 3.660 11 O -0.522 6.522 12 C -0.608 4.608 13 H 0.108 0.892 14 C -0.189 4.189 15 N -0.453 5.453 16 Si 0.821 3.179 17 H -0.168 1.168 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.075 4.075 21 C -0.069 4.069 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.059 -16.359 12.765 20.777 hybrid contribution 0.206 0.812 -0.196 0.861 sum 1.265 -15.547 12.568 20.032 Atomic orbital electron populations 1.21917 0.94379 1.02728 1.02169 1.22146 0.96390 0.87986 1.01191 1.62310 1.04357 1.11754 1.49032 1.22184 0.88020 0.96135 1.00509 1.22226 0.98681 0.92755 0.93226 1.62020 1.04537 1.10440 1.50523 1.22030 1.00636 0.87711 0.95741 1.20778 0.96969 0.82714 0.97685 1.45735 1.53553 1.10716 1.30989 1.18668 0.80443 0.86757 0.80115 1.90554 1.41573 1.79439 1.40599 1.21467 1.31433 0.94797 1.13133 0.89201 1.27040 0.93058 1.05612 0.93212 1.70206 1.26815 1.37686 1.10571 0.84917 0.78748 0.74697 0.79557 1.16833 1.19361 1.19356 1.22219 0.88242 0.97192 0.99850 1.22192 0.99256 0.91949 0.93501 0.92066 0.92836 0.90712 0.94980 0.89539 0.94767 0.88233 0.88911 0.93870 0.88985 0.93553 0.95242 0.95178 0.76991 0.91558 0.94082 0.91557 0.95123 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.17 71.98 0.66 -1.51 16 2 C 0.05 0.79 6.00 86.30 0.52 1.30 16 3 N -0.55 -11.00 4.86 -895.71 -4.35 -15.35 16 4 C 0.06 1.12 5.58 86.31 0.48 1.60 16 5 C 0.06 1.23 5.61 86.31 0.48 1.71 16 6 N -0.55 -14.92 4.71 -895.70 -4.22 -19.14 16 7 C 0.07 1.96 5.07 86.30 0.44 2.40 16 8 C 0.14 5.88 5.61 86.38 0.48 6.37 16 9 N -0.75 -34.94 5.55 -467.41 -2.59 -37.53 16 10 C 0.54 32.03 7.75 86.36 0.67 32.70 16 11 O -0.63 -44.02 15.02 -4.33 -0.06 -44.08 16 12 C -0.57 -32.87 9.54 24.83 0.24 -32.64 16 13 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 14 C 0.03 1.45 5.50 85.30 0.47 1.92 16 15 N -0.82 -51.32 11.83 21.84 0.26 -51.06 16 16 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 17 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 C 0.05 1.43 5.41 86.31 0.47 1.90 16 21 C 0.06 1.35 4.93 86.31 0.43 1.78 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.05 0.82 6.26 -2.39 -0.01 0.80 16 24 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 25 H 0.03 0.51 8.08 -2.39 -0.02 0.50 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.69 8.07 -2.39 -0.02 1.67 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 2.43 8.03 -2.38 -0.02 2.41 16 32 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.03 1.31 6.49 -2.38 -0.02 1.29 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.40 15.44 8.45 -92.71 -0.78 14.65 16 36 H 0.27 15.41 8.29 -92.71 -0.77 14.64 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 2.05 6.34 -2.39 -0.02 2.03 16 39 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.94 5.99 -2.39 -0.01 1.92 16 Total: -1.00 -76.70 318.26 -3.38 -80.07 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.23 Total: 26.27 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 5.33 Total: 17.53 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -10.91 Total: -123.08 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.06 Total: -44.08 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -76.70 -3.38 -80.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229009708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.454 kcal (2) G-P(sol) polarization free energy of solvation -76.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds