Wall clock time and date at job start Sun Mar 29 2020 23:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47320 * 2 1 4 4 H 1.09000 * 109.46827 * 54.99682 * 3 2 1 5 5 C 1.50701 * 109.47109 * 174.99913 * 3 2 1 6 6 N 1.34782 * 119.99773 * 299.99676 * 5 3 2 7 7 O 1.21274 * 120.00197 * 119.99949 * 5 3 2 8 8 N 1.46896 * 109.47013 * 295.00146 * 3 2 1 9 9 C 1.46962 * 110.99870 * 298.79363 * 8 3 2 10 10 C 1.53050 * 109.36571 * 176.81356 * 9 8 3 11 11 N 1.46955 * 109.36203 * 58.40590 * 10 9 8 12 12 C 1.46906 * 110.99767 * 176.81510 * 11 10 9 13 13 C 1.50697 * 109.47262 * 58.97183 * 12 11 10 14 14 H 1.08001 * 120.00129 * 5.01682 * 13 12 11 15 15 C 1.37884 * 119.99880 * 185.00693 * 13 12 11 16 16 N 1.31516 * 119.99471 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00097 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47099 * 90.00100 * 17 15 13 19 19 H 1.48495 * 109.47104 * 210.00187 * 17 15 13 20 20 H 1.48497 * 109.46994 * 330.00622 * 17 15 13 21 21 C 1.46958 * 110.87925 * 300.67414 * 11 10 9 22 22 C 1.46959 * 111.00134 * 175.00084 * 8 3 2 23 23 H 1.09000 * 109.47160 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47110 * 300.00352 * 1 2 3 25 25 H 1.09006 * 109.46886 * 60.00217 * 1 2 3 26 26 H 1.09000 * 109.47110 * 239.99647 * 2 1 3 27 27 H 1.08996 * 109.46440 * 120.00011 * 2 1 3 28 28 H 0.97001 * 120.00033 * 0.02562 * 6 5 3 29 29 H 0.96996 * 119.99674 * 180.02562 * 6 5 3 30 30 H 1.08999 * 109.49216 * 296.78435 * 9 8 3 31 31 H 1.09005 * 109.48499 * 56.84894 * 9 8 3 32 32 H 1.09002 * 109.48806 * 298.43882 * 10 9 8 33 33 H 1.08998 * 109.48690 * 178.37064 * 10 9 8 34 34 H 1.08996 * 109.46732 * 178.97919 * 12 11 10 35 35 H 1.09001 * 109.46780 * 298.97644 * 12 11 10 36 36 H 0.96999 * 119.99363 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.49378 * 299.35632 * 21 11 10 38 38 H 1.09005 * 109.48697 * 179.28952 * 21 11 10 39 39 H 1.09002 * 109.48445 * 303.15358 * 22 8 3 40 40 H 1.09008 * 109.48749 * 63.19338 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 7 4.1298 0.8910 1.2033 7 8 4.2218 1.9434 -0.7476 8 7 1.6515 2.0992 -1.2552 9 6 2.2440 1.4150 -2.4130 10 6 1.7525 2.0792 -3.7013 11 7 2.1221 3.5015 -3.6878 12 6 1.7335 4.1583 -4.9431 13 6 0.2452 4.0265 -5.1391 14 1 -0.3636 3.5788 -4.3675 15 6 -0.3394 4.4776 -6.3036 16 7 0.4021 5.0224 -7.2433 17 14 -2.1844 4.3149 -6.5464 18 1 -2.8609 5.5312 -6.0287 19 1 -2.4816 4.1611 -7.9932 20 1 -2.6773 3.1231 -5.8103 21 6 1.5295 4.1857 -2.5301 22 6 2.0211 3.5215 -1.2418 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.5861 0.4915 1.9002 29 1 5.0965 0.8925 1.2831 30 1 3.3305 1.4845 -2.3596 31 1 1.9457 0.3666 -2.4077 32 1 0.6686 1.9858 -3.7679 33 1 2.2134 1.5918 -4.5604 34 1 2.0022 5.2137 -4.8992 35 1 2.2530 3.6854 -5.7765 36 1 -0.0092 5.3394 -8.0626 37 1 0.4431 4.1162 -2.5834 38 1 1.8279 5.2341 -2.5354 39 1 1.5602 4.0089 -0.3826 40 1 3.1051 3.6149 -1.1747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119253721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:22 Heat of formation + Delta-G solvation = -24.505457 kcal Electronic energy + Delta-G solvation = -20260.134890 eV Core-core repulsion = 17302.887466 eV Total energy + Delta-G solvation = -2957.247424 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45260 -37.79336 -35.57349 -34.05926 -32.78013 -31.78469 -30.12730 -28.30193 -26.22784 -24.28950 -23.11611 -21.94008 -21.55022 -19.99398 -19.09462 -17.51788 -16.81886 -16.17942 -15.75139 -15.08981 -14.67231 -14.42817 -14.33348 -13.85143 -13.76271 -13.57927 -12.81704 -12.80653 -12.23261 -11.86166 -11.72373 -11.63376 -11.26289 -10.98518 -10.89091 -10.77767 -10.51467 -10.35806 -10.24555 -10.19321 -9.87481 -9.73295 -9.59380 -9.40385 -8.35171 -7.80080 -6.98581 -5.93789 -4.02765 2.57232 3.32556 3.39031 3.42770 3.46758 4.12638 4.47529 4.69595 4.87377 4.97651 5.20026 5.27600 5.35915 5.45532 5.62638 5.64913 5.83889 5.91373 6.00846 6.06147 6.20893 6.29633 6.35209 6.41687 6.50616 6.67745 6.78519 6.91930 7.03777 7.12930 7.32956 7.40758 7.49993 7.62920 7.99624 8.18782 8.24396 8.41481 8.45093 9.08861 9.63501 11.10740 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.031499 B = 0.005603 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.701067 B = 4995.760437 C = 5506.471685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.064 3.936 4 H 0.104 0.896 5 C 0.483 3.517 6 N -0.860 5.860 7 O -0.523 6.523 8 N -0.503 5.503 9 C 0.034 3.966 10 C 0.071 3.929 11 N -0.540 5.540 12 C 0.186 3.814 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.069 3.931 22 C 0.045 3.955 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.398 0.602 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.026 0.974 35 H 0.033 0.967 36 H 0.261 0.739 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -10.194 18.408 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.049 4.049 4 H 0.122 0.878 5 C 0.267 3.733 6 N -0.425 5.425 7 O -0.398 6.398 8 N -0.227 5.227 9 C -0.093 4.093 10 C -0.058 4.058 11 N -0.264 5.264 12 C 0.061 3.939 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.060 4.060 22 C -0.083 4.083 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.225 0.775 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.382 -9.719 17.517 20.316 hybrid contribution -0.939 -0.210 0.205 0.984 sum 2.442 -9.929 17.722 20.460 Atomic orbital electron populations 1.21659 0.94111 1.01144 1.03173 1.21562 0.97823 0.93380 1.02169 1.22002 0.88651 0.97891 0.96386 0.87839 1.22409 0.92687 0.76928 0.81299 1.44167 1.11236 1.62913 1.24194 1.90741 1.65901 1.44161 1.38997 1.62592 1.56723 1.03095 1.00245 1.22639 1.00113 0.96502 0.90058 1.21847 0.99221 0.90021 0.94733 1.62638 1.57741 1.01735 1.04288 1.19733 0.93999 0.94367 0.85840 1.21794 0.94239 1.39988 1.02358 0.92330 1.24971 0.97860 0.95110 0.95934 1.69957 1.35252 1.40620 1.07361 0.86649 0.86055 0.78439 0.77201 1.20724 1.21253 1.19948 1.21861 0.97938 0.96940 0.89298 1.22415 1.00493 0.87063 0.98284 0.93163 0.92998 0.90771 0.91023 0.91872 0.77424 0.77488 0.90917 0.91895 0.93745 0.91686 0.95613 0.94865 0.92935 0.93874 0.91659 0.92127 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.80 37.16 0.36 -1.04 16 2 C -0.11 -1.07 5.17 -26.73 -0.14 -1.20 16 3 C 0.06 0.75 2.17 -68.87 -0.15 0.60 16 4 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 5 C 0.48 6.04 6.83 -10.98 -0.07 5.97 16 6 N -0.86 -6.73 8.74 31.22 0.27 -6.46 16 7 O -0.52 -9.08 12.41 5.56 0.07 -9.01 16 8 N -0.50 -7.98 4.15 -227.87 -0.95 -8.92 16 9 C 0.03 0.60 4.92 -3.76 -0.02 0.59 16 10 C 0.07 1.51 5.24 -3.77 -0.02 1.49 16 11 N -0.54 -12.58 4.92 -235.91 -1.16 -13.74 16 12 C 0.19 5.06 5.14 -4.97 -0.03 5.03 16 13 C -0.54 -15.45 7.66 -34.44 -0.26 -15.71 16 14 H 0.06 1.66 5.82 -52.49 -0.31 1.35 16 15 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.07 1.44 5.32 -3.77 -0.02 1.42 16 22 C 0.05 0.79 5.27 -3.77 -0.02 0.77 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 26 H 0.07 0.78 6.12 -51.93 -0.32 0.46 16 27 H 0.06 0.43 7.43 -51.93 -0.39 0.04 16 28 H 0.40 1.84 8.19 -40.82 -0.33 1.50 16 29 H 0.39 2.82 8.93 -40.82 -0.36 2.45 16 30 H 0.07 1.42 5.34 -51.93 -0.28 1.15 16 31 H 0.06 0.98 6.07 -51.93 -0.32 0.67 16 32 H 0.04 1.02 6.62 -51.93 -0.34 0.68 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.03 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.04 0.98 6.78 -51.93 -0.35 0.62 16 38 H 0.06 1.36 8.12 -51.93 -0.42 0.94 16 39 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 40 H 0.06 1.18 5.86 -51.92 -0.30 0.87 16 LS Contribution 305.57 15.07 4.60 4.60 Total: -1.00 -33.04 305.57 -8.12 -41.17 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.21 Total: 2.04 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -0.46 Total: -0.37 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -1.10 Total: -55.36 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.04 -8.12 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119253721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.660 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds