Wall clock time and date at job start Sun Mar 29 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.36944 * 119.99887 * 2 1 4 4 H 1.08005 * 119.99741 * 203.04596 * 3 2 1 5 5 C 1.38803 * 119.99914 * 23.04661 * 3 2 1 6 6 N 1.31626 * 120.00313 * 12.93408 * 5 3 2 7 7 Si 1.86797 * 120.00200 * 192.93542 * 5 3 2 8 8 H 1.48499 * 109.46979 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47361 * 119.99849 * 7 5 3 10 10 H 1.48504 * 109.47508 * 240.00090 * 7 5 3 11 11 C 1.46500 * 120.00375 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47229 * 90.00000 * 11 2 1 13 13 N 1.46495 * 109.47203 * 180.02562 * 12 11 2 14 14 C 1.34779 * 119.99994 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99980 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.27533 * 60.63412 * 16 14 13 18 18 C 1.54588 * 110.30889 * 182.82863 * 16 14 13 19 19 C 1.54942 * 102.92204 * 140.87469 * 18 16 14 20 20 N 1.48810 * 103.34762 * 322.69069 * 19 18 16 21 21 C 1.46890 * 111.18397 * 159.50593 * 20 19 18 22 22 C 1.47905 * 105.67529 * 38.97471 * 20 19 18 23 23 H 1.08997 * 109.47345 * 275.12067 * 1 2 3 24 24 H 1.09004 * 109.47476 * 35.12351 * 1 2 3 25 25 H 1.09004 * 109.47004 * 155.12303 * 1 2 3 26 26 H 0.97001 * 120.00486 * 179.97438 * 6 5 3 27 27 H 1.09003 * 109.47103 * 329.99797 * 11 2 1 28 28 H 1.08998 * 109.47323 * 210.00015 * 11 2 1 29 29 H 1.08998 * 109.46807 * 60.00076 * 12 11 2 30 30 H 1.08998 * 109.46981 * 300.00225 * 12 11 2 31 31 H 0.97002 * 120.00157 * 359.97438 * 13 12 11 32 32 H 1.09004 * 110.72529 * 259.22927 * 18 16 14 33 33 H 1.08996 * 110.72598 * 22.51202 * 18 16 14 34 34 H 1.08995 * 110.66707 * 81.02295 * 19 18 16 35 35 H 1.09000 * 110.66133 * 203.98447 * 19 18 16 36 36 H 1.09004 * 109.47564 * 302.66128 * 21 20 19 37 37 H 1.08997 * 109.47446 * 62.66171 * 21 20 19 38 38 H 1.09004 * 109.47167 * 182.66492 * 21 20 19 39 39 H 1.09004 * 109.91417 * 215.45089 * 22 20 19 40 40 H 1.09004 * 109.91238 * 94.36244 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2597 1.1460 7 14 2.3156 4.0074 0.1454 8 1 3.5691 3.8266 -0.6301 9 1 1.3713 4.8507 -0.6306 10 1 2.6240 4.6704 1.4380 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 7 3.1846 -2.9787 -1.4438 14 6 3.5219 -3.5615 -2.6113 15 8 3.2190 -3.0357 -3.6614 16 6 4.2755 -4.8666 -2.6119 17 1 3.6925 -5.6397 -2.1111 18 6 4.6062 -5.2946 -4.0601 19 6 6.0365 -5.8764 -3.9314 20 7 6.6821 -4.9829 -2.9318 21 6 7.8486 -5.6300 -2.3167 22 6 5.6411 -4.6956 -1.9212 23 1 -0.3634 0.0917 1.0235 24 1 -0.3634 0.8406 -0.5913 25 1 -0.3633 -0.9324 -0.4323 26 1 -0.0151 3.0662 1.4752 27 1 1.6085 -2.0286 0.5130 28 1 3.1499 -1.1385 0.5133 29 1 3.0416 -0.9498 -1.9567 30 1 1.5002 -1.8398 -1.9572 31 1 3.4272 -3.3991 -0.6040 32 1 3.9090 -6.0580 -4.4055 33 1 4.5988 -4.4334 -4.7280 34 1 6.0030 -6.9015 -3.5623 35 1 6.5581 -5.8299 -4.8873 36 1 7.5420 -6.5682 -1.8543 37 1 8.5987 -5.8301 -3.0819 38 1 8.2709 -4.9717 -1.5574 39 1 5.7482 -3.6734 -1.5581 40 1 5.7273 -5.3956 -1.0901 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731792607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:52 Heat of formation + Delta-G solvation = -9.217528 kcal Electronic energy + Delta-G solvation = -19055.787356 eV Core-core repulsion = 16099.202866 eV Total energy + Delta-G solvation = -2956.584490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 255.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.15003 -38.10491 -36.03857 -34.16591 -32.48623 -31.32137 -29.54935 -27.82509 -26.04741 -25.82072 -23.55958 -21.92366 -21.36727 -20.65174 -19.62434 -17.32732 -16.63692 -16.31733 -15.87875 -15.16241 -14.82379 -14.64135 -14.42217 -13.76316 -13.68508 -13.33706 -13.17741 -12.68164 -12.37538 -12.30653 -12.05520 -11.77887 -11.65446 -11.35607 -11.16330 -10.95608 -10.87530 -10.85803 -10.58308 -10.33375 -9.93085 -9.92057 -9.58496 -8.71598 -8.68250 -8.55878 -6.79046 -5.73709 -3.21824 2.83105 3.37787 3.40705 3.46769 3.49827 3.73667 4.31339 4.43034 4.51916 4.76824 4.99855 5.04898 5.11095 5.17059 5.29183 5.34129 5.40412 5.57270 5.62434 5.64179 5.66725 5.78173 5.83010 5.93780 6.12505 6.26442 6.56104 6.62077 6.66631 6.72705 6.77022 6.90975 7.36763 7.71156 7.76982 7.81062 8.37411 8.47348 9.21802 9.84202 10.32155 11.31184 Molecular weight = 255.17amu Principal moments of inertia in cm(-1) A = 0.032212 B = 0.003889 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.029203 B = 7197.162010 C = 7544.663771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.724 5.724 14 C 0.518 3.482 15 O -0.539 6.539 16 C -0.122 4.122 17 H 0.100 0.900 18 C -0.109 4.109 19 C 0.033 3.967 20 N -0.521 5.521 21 C 0.016 3.984 22 C 0.044 3.956 23 H 0.033 0.967 24 H 0.042 0.958 25 H -0.001 1.001 26 H 0.252 0.748 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 -18.393 -4.772 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.375 5.375 14 C 0.303 3.697 15 O -0.416 6.416 16 C -0.144 4.144 17 H 0.118 0.882 18 C -0.148 4.148 19 C -0.094 4.094 20 N -0.245 5.245 21 C -0.133 4.133 22 C -0.084 4.084 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.679 -17.346 -5.669 20.657 hybrid contribution 0.168 -0.015 0.760 0.778 sum 9.847 -17.361 -4.909 20.554 Atomic orbital electron populations 1.20836 0.82333 0.95589 0.99598 1.43793 1.01948 1.00344 1.85970 1.19246 0.98378 0.85506 1.35684 0.91267 1.25025 0.97821 0.98616 0.98024 1.70084 1.19425 1.27181 1.38469 0.86173 0.78674 0.84143 0.77499 1.20213 1.21532 1.21684 1.20838 0.96690 0.89139 0.91791 1.22418 0.95610 0.83125 1.02001 1.46088 1.58239 1.25186 1.07938 1.20284 0.79336 0.86049 0.84044 1.90687 1.54662 1.64849 1.31402 1.22210 0.96539 0.96403 0.99272 0.88155 1.22462 0.95032 1.02056 0.95203 1.23340 0.94837 0.94328 0.96905 1.64782 1.06101 1.41041 1.12614 1.22527 0.93838 0.97252 0.99657 1.22871 0.89090 1.02667 0.93808 0.94871 0.93937 0.98288 0.93755 0.94160 0.92965 0.91555 0.92316 0.77109 0.90610 0.88562 0.93715 0.89692 0.95396 0.91169 0.91123 0.89523 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.84 0.54 4.54 16 2 N -0.60 -15.08 2.92 -181.12 -0.53 -15.61 16 3 C -0.26 -7.17 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.89 7.86 -52.48 -0.41 1.47 16 5 C 0.00 0.10 5.10 -17.43 -0.09 0.01 16 6 N -0.91 -26.56 10.71 55.49 0.59 -25.96 16 7 Si 0.91 22.09 29.57 -169.99 -5.03 17.06 16 8 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.14 2.85 5.76 -4.04 -0.02 2.83 16 12 C 0.09 1.75 6.00 -4.04 -0.02 1.72 16 13 N -0.72 -10.43 5.39 -60.30 -0.33 -10.76 16 14 C 0.52 7.81 6.96 -10.98 -0.08 7.73 16 15 O -0.54 -10.52 15.44 5.56 0.09 -10.43 16 16 C -0.12 -1.32 3.38 -90.42 -0.31 -1.62 16 17 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.11 -1.16 6.40 -24.87 -0.16 -1.32 16 19 C 0.03 0.30 6.58 -1.74 -0.01 0.29 16 20 N -0.52 -5.43 5.56 -238.47 -1.33 -6.76 16 21 C 0.02 0.13 9.41 60.06 0.57 0.69 16 22 C 0.04 0.44 6.27 -2.76 -0.02 0.42 16 23 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 28 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.40 4.41 8.45 -40.82 -0.34 4.07 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.29 6.91 -51.93 -0.36 0.94 16 34 H 0.04 0.34 7.97 -51.93 -0.41 -0.07 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.19 8.01 -51.93 -0.42 -0.22 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.98 7.59 -51.93 -0.39 0.59 16 40 H 0.05 0.43 7.73 -51.93 -0.40 0.03 16 LS Contribution 324.06 15.07 4.88 4.88 Total: -1.00 -32.72 324.06 -8.25 -40.97 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.85 Total: -1.37 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.25 Total: 7.98 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -1.59 Total: -59.09 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.72 -8.25 -40.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731792607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.749 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds