Wall clock time and date at job start Mon Mar 30 2020 00:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 C 1.53003 * 109.47098 * 239.99981 * 2 1 3 5 5 C 1.52999 * 109.47185 * 120.00266 * 2 1 3 6 6 N 1.46906 * 109.47310 * 84.09908 * 5 2 1 7 7 C 1.46906 * 110.99769 * 80.12141 * 6 5 2 8 8 C 1.50701 * 109.46914 * 68.09544 * 7 6 5 9 9 H 1.07998 * 120.00006 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99954 * 180.02562 * 8 7 6 11 11 N 1.31506 * 119.99710 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99858 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46971 * 90.00051 * 12 10 8 14 14 H 1.48501 * 109.47279 * 209.99932 * 12 10 8 15 15 H 1.48500 * 109.47457 * 330.00084 * 12 10 8 16 16 C 1.46897 * 111.00047 * 316.17450 * 6 5 2 17 17 C 1.53000 * 109.46817 * 280.30488 * 16 6 5 18 18 H 1.08998 * 110.33339 * 297.84956 * 17 16 6 19 19 C 1.54477 * 110.37315 * 175.59767 * 17 16 6 20 20 C 1.54512 * 104.06486 * 217.18841 * 19 17 16 21 21 C 1.54479 * 104.06028 * 0.02562 * 20 19 17 22 22 O 1.44419 * 104.80523 * 23.97347 * 21 20 19 23 23 H 1.08995 * 109.47053 * 292.00995 * 1 2 3 24 24 H 1.08999 * 109.46797 * 52.00932 * 1 2 3 25 25 H 1.09004 * 109.47439 * 172.00816 * 1 2 3 26 26 H 1.08997 * 109.47358 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47338 * 300.00217 * 3 2 1 28 28 H 1.08997 * 109.46950 * 60.00050 * 3 2 1 29 29 H 1.09000 * 109.47260 * 302.77202 * 4 2 1 30 30 H 1.09007 * 109.47120 * 62.76498 * 4 2 1 31 31 H 1.08994 * 109.47417 * 182.76572 * 4 2 1 32 32 H 1.08994 * 109.47096 * 324.10671 * 5 2 1 33 33 H 1.09000 * 109.47310 * 204.10285 * 5 2 1 34 34 H 1.09002 * 109.47555 * 188.09498 * 7 6 5 35 35 H 1.08996 * 109.47065 * 308.09866 * 7 6 5 36 36 H 0.97005 * 119.99816 * 179.97438 * 11 10 8 37 37 H 1.09003 * 109.47590 * 40.30164 * 16 6 5 38 38 H 1.09002 * 109.47409 * 160.30808 * 16 6 5 39 39 H 1.09000 * 110.51651 * 335.83988 * 19 17 16 40 40 H 1.09006 * 110.51073 * 98.40909 * 19 17 16 41 41 H 1.08998 * 110.50823 * 118.64364 * 20 19 17 42 42 H 1.08995 * 110.51263 * 241.21705 * 20 19 17 43 43 H 1.08995 * 110.37054 * 142.81035 * 21 20 19 44 44 H 1.09005 * 110.36888 * 265.14732 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 2.0690 -2.1690 1.0013 7 6 3.2650 -2.5484 0.2372 8 6 4.4906 -2.3506 1.0915 9 1 4.3910 -1.9798 2.1010 10 6 5.7391 -2.6421 0.5841 11 7 5.8603 -3.0922 -0.6455 12 14 7.2582 -2.3963 1.6429 13 1 7.5453 -3.6447 2.3941 14 1 8.4170 -2.0625 0.7763 15 1 7.0201 -1.2863 2.6003 16 6 0.8459 -2.6107 0.3180 17 6 -0.2862 -2.7490 1.3379 18 1 -0.0373 -3.5081 2.0795 19 6 -1.6102 -3.1060 0.6265 20 6 -2.6835 -2.3241 1.4164 21 6 -1.8810 -1.5867 2.5112 22 8 -0.5426 -1.4803 1.9791 23 1 -0.3633 0.3851 0.9527 24 1 -0.3633 0.6326 -0.8099 25 1 -0.3634 -1.0177 -0.1429 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6367 -1.7336 -1.2745 30 1 1.7177 -0.1796 -2.1386 31 1 3.1288 -0.7644 -1.2249 32 1 1.3763 -0.5096 2.0874 33 1 3.0455 -0.3728 1.4849 34 1 3.1918 -3.5956 -0.0563 35 1 3.3393 -1.9256 -0.6543 36 1 6.7387 -3.2969 -1.0027 37 1 0.5664 -1.8766 -0.4377 38 1 1.0242 -3.5741 -0.1597 39 1 -1.5860 -2.7778 -0.4127 40 1 -1.7971 -4.1784 0.6830 41 1 -3.1899 -1.6093 0.7678 42 1 -3.4036 -3.0094 1.8635 43 1 -2.2997 -0.5957 2.6860 44 1 -1.8773 -2.1664 3.4343 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111250708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:16:33 Heat of formation + Delta-G solvation = -11.721745 kcal Electronic energy + Delta-G solvation = -21321.461202 eV Core-core repulsion = 18468.308464 eV Total energy + Delta-G solvation = -2853.152738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52515 -39.37878 -35.50834 -34.30479 -32.89810 -31.56883 -29.22028 -28.52504 -27.89840 -26.86239 -25.17357 -23.02864 -21.82911 -21.52046 -19.84024 -18.41960 -17.66045 -16.83565 -16.70869 -16.33228 -15.83059 -15.68316 -15.31927 -14.87485 -14.55806 -14.39204 -14.10200 -13.56258 -13.07292 -12.97868 -12.81646 -12.63488 -12.55386 -12.45187 -12.33420 -12.29437 -12.14002 -12.03598 -11.94995 -11.83980 -11.41171 -11.39042 -11.28457 -10.98972 -10.86488 -10.50987 -10.22399 -8.48534 -8.11499 -6.19452 1.39221 1.40030 1.51086 2.42593 3.17450 3.18012 3.46026 3.84823 4.00778 4.04666 4.08431 4.14621 4.22308 4.37431 4.40769 4.60014 4.70910 4.72122 4.77493 4.81034 4.85635 4.94543 4.97073 4.99896 5.02670 5.05554 5.13730 5.16585 5.25560 5.29097 5.34906 5.38068 5.40119 5.51104 5.61518 5.66309 5.74320 5.80230 6.14994 6.21283 6.58247 6.85977 6.98107 7.47352 8.96126 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.006523 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.226675 B = 4291.481383 C = 4662.073854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.163 4.163 5 C 0.083 3.917 6 N -0.540 5.540 7 C 0.165 3.835 8 C -0.513 4.513 9 H 0.049 0.951 10 C 0.003 3.997 11 N -0.933 5.933 12 Si 0.958 3.042 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.269 1.269 16 C 0.012 3.988 17 C 0.087 3.913 18 H 0.049 0.951 19 C -0.147 4.147 20 C -0.142 4.142 21 C 0.031 3.969 22 O -0.369 6.369 23 H 0.065 0.935 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.039 0.961 34 H -0.014 1.014 35 H 0.035 0.965 36 H 0.261 0.739 37 H 0.104 0.896 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.408 4.784 1.540 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.219 4.219 5 C -0.045 4.045 6 N -0.263 5.263 7 C 0.040 3.960 8 C -0.552 4.552 9 H 0.067 0.933 10 C -0.194 4.194 11 N -0.574 5.574 12 Si 0.784 3.216 13 H -0.202 1.202 14 H -0.207 1.207 15 H -0.194 1.194 16 C -0.115 4.115 17 C 0.029 3.971 18 H 0.067 0.933 19 C -0.186 4.186 20 C -0.180 4.180 21 C -0.046 4.046 22 O -0.288 6.288 23 H 0.084 0.916 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.004 0.996 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.098 4.659 1.901 17.823 hybrid contribution 1.284 -0.139 -0.295 1.324 sum -15.815 4.520 1.606 16.526 Atomic orbital electron populations 1.22464 0.92521 1.02852 1.01438 1.21090 0.97434 0.95841 0.95185 1.21763 0.99842 0.95197 1.01987 1.22761 1.00562 1.00873 0.97753 1.22105 0.99235 0.86588 0.96555 1.62084 1.01749 1.14443 1.48007 1.20385 0.87180 0.94170 0.94308 1.21489 0.91975 1.42239 0.99489 0.93289 1.25751 1.01943 0.95452 0.96299 1.70062 1.24323 1.46734 1.16288 0.85547 0.78874 0.78538 0.78637 1.20219 1.20664 1.19394 1.23359 0.90579 1.01000 0.96551 1.22913 0.94313 0.86172 0.93697 0.93331 1.22972 0.93489 1.01619 1.00470 1.22865 0.97853 0.99671 0.97624 1.23535 0.83072 1.01685 0.96304 1.89343 1.31976 1.33469 1.74044 0.91604 0.93556 0.90145 0.94654 0.91861 0.91939 0.91495 0.92472 0.93561 0.90628 0.94230 0.99590 0.94749 0.92975 0.87916 0.92604 0.90458 0.89836 0.89862 0.89322 0.88213 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 6.66 71.98 0.48 -3.32 16 2 C -0.09 -3.20 0.77 -52.18 -0.04 -3.24 16 3 C -0.13 -4.02 8.34 71.98 0.60 -3.42 16 4 C -0.16 -6.12 6.45 71.98 0.46 -5.66 16 5 C 0.08 3.41 4.67 86.30 0.40 3.82 16 6 N -0.54 -24.11 4.59 -900.77 -4.14 -28.25 16 7 C 0.16 8.85 4.13 85.56 0.35 9.21 16 8 C -0.51 -30.14 8.26 25.60 0.21 -29.93 16 9 H 0.05 2.91 7.46 -2.91 -0.02 2.89 16 10 C 0.00 0.17 5.46 84.66 0.46 0.63 16 11 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 12 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 13 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 C 0.01 0.44 3.22 86.30 0.28 0.72 16 17 C 0.09 2.57 3.21 31.10 0.10 2.67 16 18 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 19 C -0.15 -3.09 6.16 31.61 0.19 -2.90 16 20 C -0.14 -2.36 7.09 31.61 0.22 -2.13 16 21 C 0.03 0.62 7.63 72.48 0.55 1.18 16 22 O -0.37 -10.57 5.33 -148.98 -0.79 -11.36 16 23 H 0.07 1.81 6.63 -2.39 -0.02 1.79 16 24 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 25 H 0.08 2.23 2.64 -2.38 -0.01 2.22 16 26 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 2.57 3.84 -2.39 -0.01 2.56 16 30 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 2.12 5.87 -2.39 -0.01 2.11 16 32 H 0.08 2.99 6.01 -2.39 -0.01 2.97 16 33 H 0.04 1.86 6.50 -2.39 -0.02 1.85 16 34 H -0.01 -0.83 7.75 -2.39 -0.02 -0.85 16 35 H 0.04 1.91 3.25 -2.39 -0.01 1.90 16 36 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 37 H 0.10 3.43 1.87 -2.39 0.00 3.43 16 38 H 0.06 2.10 7.63 -2.39 -0.02 2.08 16 39 H 0.08 1.57 7.37 -2.39 -0.02 1.55 16 40 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -65.22 310.78 2.64 -62.58 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.97 Total: 17.98 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.28 Total: -32.37 kcal Atomic # 7 Polarization: -81.02 SS G_CDS: -3.85 Total: -84.87 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -0.79 Total: -11.36 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -65.22 2.64 -62.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111250708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.863 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds