Wall clock time and date at job start Sun Mar 29 2020 23:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 C 1.53004 * 109.54246 * 300.10994 * 3 2 1 5 5 C 1.53104 * 109.50503 * 60.21625 * 3 2 1 6 6 O 1.43019 * 109.25827 * 176.78421 * 5 3 2 7 7 C 1.43013 * 113.73300 * 301.33208 * 6 5 3 8 8 C 1.53094 * 109.26297 * 58.67048 * 7 6 5 9 9 N 1.47005 * 109.50769 * 179.97438 * 3 2 1 10 10 C 1.46900 * 111.00171 * 57.67023 * 9 3 2 11 11 C 1.52995 * 109.47358 * 196.54663 * 10 9 3 12 12 H 1.09000 * 109.47544 * 305.19939 * 11 10 9 13 13 C 1.52998 * 109.47249 * 185.19735 * 11 10 9 14 14 C 1.53000 * 109.47165 * 65.20329 * 11 10 9 15 15 C 1.50696 * 109.47495 * 184.99926 * 14 11 10 16 16 H 1.08001 * 119.99850 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00173 * 179.71985 * 15 14 11 18 18 N 1.31519 * 120.00269 * 0.27298 * 17 15 14 19 19 Si 1.86806 * 120.00038 * 180.27570 * 17 15 14 20 20 H 1.48497 * 109.47144 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47066 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.46815 * 240.00067 * 19 17 15 23 23 H 1.08997 * 109.47031 * 60.00322 * 1 2 3 24 24 H 1.09006 * 109.46976 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47162 * 299.99895 * 1 2 3 26 26 H 1.08998 * 109.47162 * 240.00105 * 2 1 3 27 27 H 1.09004 * 109.46746 * 119.99980 * 2 1 3 28 28 H 1.08996 * 109.46494 * 299.89131 * 4 3 2 29 29 H 1.08997 * 109.47161 * 59.88997 * 4 3 2 30 30 H 1.08992 * 109.47074 * 179.89287 * 4 3 2 31 31 H 1.08998 * 109.50629 * 56.85023 * 5 3 2 32 32 H 1.09001 * 109.54219 * 296.73941 * 5 3 2 33 33 H 1.09001 * 109.50745 * 298.73364 * 7 6 5 34 34 H 1.09004 * 109.50181 * 178.60913 * 7 6 5 35 35 H 1.09001 * 109.50875 * 183.21510 * 8 7 6 36 36 H 1.09007 * 109.54426 * 63.10646 * 8 7 6 37 37 H 1.09001 * 109.46650 * 76.54882 * 10 9 3 38 38 H 1.08996 * 109.47169 * 316.55055 * 10 9 3 39 39 H 1.09007 * 109.47563 * 294.43296 * 13 11 10 40 40 H 1.08998 * 109.47050 * 54.43057 * 13 11 10 41 41 H 1.08999 * 109.47525 * 174.43058 * 13 11 10 42 42 H 1.09004 * 109.47536 * 64.99277 * 14 11 10 43 43 H 1.09008 * 109.46972 * 304.99898 * 14 11 10 44 44 H 0.96992 * 120.00003 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5286 2.1662 -1.2473 5 6 1.5345 2.1634 1.2525 6 8 2.0751 3.4871 1.2854 7 6 3.5048 3.5251 1.2870 8 6 4.0301 2.8180 0.0349 9 7 3.5101 1.4434 0.0006 10 6 4.0375 0.7102 -1.1579 11 6 5.5113 0.3744 -0.9211 12 1 6.0605 1.2884 -0.6951 13 6 6.0950 -0.2736 -2.1781 14 6 5.6305 -0.5965 0.2553 15 6 7.0860 -0.8315 0.5672 16 1 7.8497 -0.3375 -0.0152 17 6 7.4427 -1.6724 1.6000 18 7 6.5128 -2.2735 2.3097 19 14 9.2468 -1.9577 1.9915 20 1 10.0873 -1.1714 1.0532 21 1 9.5249 -1.5275 3.3854 22 1 9.5624 -3.4015 1.8467 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8920 1.6546 -2.1386 29 1 0.4387 2.1651 -1.2467 30 1 1.8910 3.1941 -1.2452 31 1 1.8539 1.6177 2.1404 32 1 0.4460 2.2153 1.2291 33 1 3.8814 3.0189 2.1758 34 1 3.8412 4.5619 1.2877 35 1 5.1196 2.7944 0.0602 36 1 3.6984 3.3553 -0.8537 37 1 3.9445 1.3274 -2.0515 38 1 3.4719 -0.2118 -1.2926 39 1 5.6127 -1.2363 -2.3482 40 1 5.9215 0.3761 -3.0359 41 1 7.1667 -0.4225 -2.0460 42 1 5.1573 -1.5432 -0.0053 43 1 5.1358 -0.1714 1.1288 44 1 6.7638 -2.8653 3.0360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602614708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:10 Heat of formation + Delta-G solvation = -56.684099 kcal Electronic energy + Delta-G solvation = -20833.414060 eV Core-core repulsion = 17978.311608 eV Total energy + Delta-G solvation = -2855.102452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21031 -36.58567 -35.21064 -33.32364 -31.89071 -29.67562 -28.22904 -27.05025 -26.55717 -24.62707 -24.09518 -22.52288 -21.49167 -19.04239 -18.15127 -16.51907 -16.23541 -16.02478 -15.20942 -14.87740 -14.52732 -14.16385 -13.98979 -13.82069 -13.23355 -13.08583 -12.63595 -12.47735 -12.25966 -11.96670 -11.77269 -11.49325 -11.39424 -11.18230 -11.01862 -10.97175 -10.84094 -10.74675 -10.50976 -10.31672 -10.11097 -10.03351 -9.57729 -9.27830 -9.03101 -8.81568 -8.23869 -7.78708 -5.88510 -3.88721 3.35455 3.43205 3.46629 4.01309 4.11248 4.53975 4.85641 5.00778 5.14716 5.20287 5.32945 5.42399 5.47139 5.48016 5.53829 5.63045 5.73181 5.79151 5.81371 5.88532 5.90249 6.01092 6.05681 6.07952 6.11302 6.12972 6.24714 6.30845 6.37439 6.45462 6.50763 6.60131 6.99068 7.05388 7.28708 7.31664 7.50945 7.54739 7.85985 8.07677 8.20906 8.58052 9.19396 9.73578 11.22550 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.005864 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.704687 B = 4773.708865 C = 4836.494301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.076 3.924 4 C -0.175 4.175 5 C 0.075 3.925 6 O -0.389 6.389 7 C 0.063 3.937 8 C 0.018 3.982 9 N -0.511 5.511 10 C 0.059 3.941 11 C -0.083 4.083 12 H 0.054 0.946 13 C -0.132 4.132 14 C 0.038 3.962 15 C -0.512 4.512 16 H 0.052 0.948 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.884 3.116 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.019 0.981 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.027 0.973 41 H 0.060 0.940 42 H 0.008 0.992 43 H 0.032 0.968 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 8.574 -5.510 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.014 4.014 4 C -0.233 4.233 5 C -0.002 4.002 6 O -0.307 6.307 7 C -0.014 4.014 8 C -0.110 4.110 9 N -0.235 5.235 10 C -0.068 4.068 11 C -0.102 4.102 12 H 0.072 0.928 13 C -0.189 4.189 14 C 0.001 3.999 15 C -0.551 4.551 16 H 0.070 0.930 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.712 3.288 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.037 0.963 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.079 0.921 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.771 8.383 -4.928 14.511 hybrid contribution 1.028 -0.126 -0.501 1.151 sum -9.743 8.257 -5.429 13.877 Atomic orbital electron populations 1.21893 0.95962 1.01664 1.01574 1.21600 0.94974 0.94884 1.03735 1.21677 0.88738 0.95913 0.95101 1.22420 1.01467 1.01109 0.98340 1.22726 0.97884 0.83092 0.96529 1.87907 1.20574 1.27289 1.94972 1.22664 0.80654 1.00408 0.97666 1.22792 1.01431 0.89331 0.97467 1.62328 1.04896 1.13267 1.42986 1.22376 0.97969 0.97167 0.89273 1.21218 0.91551 0.99912 0.97507 0.92809 1.21694 1.01917 0.99317 0.96012 1.19028 0.95996 0.92688 0.92219 1.21361 0.92817 1.26101 1.14772 0.93026 1.24984 0.96730 0.96282 0.96433 1.69983 1.31963 1.30610 1.20890 0.86671 0.86206 0.77792 0.78100 1.19934 1.21200 1.21236 0.92716 0.92600 0.92674 0.91262 0.90364 0.92724 0.92149 0.92168 0.92197 0.88961 0.91960 0.89051 0.89213 0.94497 0.96267 0.90746 0.93548 0.95424 0.92072 0.97376 0.95001 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.21 37.16 0.34 -1.31 16 2 C -0.11 -1.58 4.75 -26.73 -0.13 -1.70 16 3 C 0.08 1.08 0.46 -131.49 -0.06 1.02 16 4 C -0.17 -2.23 7.35 37.16 0.27 -1.95 16 5 C 0.07 1.04 5.25 37.21 0.20 1.23 16 6 O -0.39 -5.77 10.28 -35.23 -0.36 -6.14 16 7 C 0.06 0.90 7.01 37.21 0.26 1.16 16 8 C 0.02 0.27 5.07 -3.72 -0.02 0.25 16 9 N -0.51 -8.52 3.82 -218.68 -0.84 -9.35 16 10 C 0.06 1.02 3.36 -3.83 -0.01 1.01 16 11 C -0.08 -1.69 2.36 -90.62 -0.21 -1.90 16 12 H 0.05 1.12 6.59 -51.93 -0.34 0.77 16 13 C -0.13 -2.48 8.91 37.16 0.33 -2.15 16 14 C 0.04 0.96 4.39 -27.88 -0.12 0.84 16 15 C -0.51 -14.38 8.48 -34.44 -0.29 -14.67 16 16 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.88 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.55 6.51 -51.93 -0.34 0.21 16 26 H 0.07 0.99 6.05 -51.93 -0.31 0.68 16 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 0.70 6.86 -51.93 -0.36 0.35 16 29 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 30 H 0.06 0.81 6.07 -51.93 -0.32 0.49 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.09 6.62 -51.93 -0.34 0.74 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.44 6.58 -51.93 -0.34 1.10 16 36 H 0.04 0.54 6.39 -51.93 -0.33 0.20 16 37 H 0.02 0.31 7.20 -51.93 -0.37 -0.07 16 38 H 0.07 1.30 5.51 -51.93 -0.29 1.01 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.23 7.12 -51.93 -0.37 0.86 16 42 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.03 0.88 7.63 -51.92 -0.40 0.49 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 322.80 15.07 4.86 4.86 Total: -1.00 -30.09 322.80 -7.82 -37.91 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.66 Total: -1.17 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 0.46 Total: -16.66 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.10 Total: -35.67 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.36 Total: -6.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.09 -7.82 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.770 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds