Wall clock time and date at job start Sun Mar 29 2020 23:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 C 1.53004 * 109.54246 * 300.10994 * 3 2 1 5 5 C 1.53104 * 109.50503 * 60.21625 * 3 2 1 6 6 O 1.43019 * 109.25827 * 176.78421 * 5 3 2 7 7 C 1.43013 * 113.73300 * 301.33208 * 6 5 3 8 8 C 1.53094 * 109.26297 * 58.67048 * 7 6 5 9 9 N 1.47005 * 109.50769 * 179.97438 * 3 2 1 10 10 C 1.46900 * 111.00171 * 57.67023 * 9 3 2 11 11 C 1.52995 * 109.47358 * 196.54663 * 10 9 3 12 12 H 1.09000 * 109.47544 * 305.19939 * 11 10 9 13 13 C 1.52998 * 109.47249 * 185.19735 * 11 10 9 14 14 C 1.53000 * 109.47165 * 65.20329 * 11 10 9 15 15 C 1.50696 * 109.47495 * 184.99926 * 14 11 10 16 16 H 1.08001 * 119.99850 * 0.02562 * 15 14 11 17 17 C 1.37872 * 120.00173 * 179.71985 * 15 14 11 18 18 N 1.31519 * 120.00269 * 0.27298 * 17 15 14 19 19 Si 1.86806 * 120.00038 * 180.27570 * 17 15 14 20 20 H 1.48497 * 109.47144 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47066 * 120.00173 * 19 17 15 22 22 H 1.48501 * 109.46815 * 240.00067 * 19 17 15 23 23 H 1.08997 * 109.47031 * 60.00322 * 1 2 3 24 24 H 1.09006 * 109.46976 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47162 * 299.99895 * 1 2 3 26 26 H 1.08998 * 109.47162 * 240.00105 * 2 1 3 27 27 H 1.09004 * 109.46746 * 119.99980 * 2 1 3 28 28 H 1.08996 * 109.46494 * 299.89131 * 4 3 2 29 29 H 1.08997 * 109.47161 * 59.88997 * 4 3 2 30 30 H 1.08992 * 109.47074 * 179.89287 * 4 3 2 31 31 H 1.08998 * 109.50629 * 56.85023 * 5 3 2 32 32 H 1.09001 * 109.54219 * 296.73941 * 5 3 2 33 33 H 1.09001 * 109.50745 * 298.73364 * 7 6 5 34 34 H 1.09004 * 109.50181 * 178.60913 * 7 6 5 35 35 H 1.09001 * 109.50875 * 183.21510 * 8 7 6 36 36 H 1.09007 * 109.54426 * 63.10646 * 8 7 6 37 37 H 1.09001 * 109.46650 * 76.54882 * 10 9 3 38 38 H 1.08996 * 109.47169 * 316.55055 * 10 9 3 39 39 H 1.09007 * 109.47563 * 294.43296 * 13 11 10 40 40 H 1.08998 * 109.47050 * 54.43057 * 13 11 10 41 41 H 1.08999 * 109.47525 * 174.43058 * 13 11 10 42 42 H 1.09004 * 109.47536 * 64.99277 * 14 11 10 43 43 H 1.09008 * 109.46972 * 304.99898 * 14 11 10 44 44 H 0.96992 * 120.00003 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5286 2.1662 -1.2473 5 6 1.5345 2.1634 1.2525 6 8 2.0751 3.4871 1.2854 7 6 3.5048 3.5251 1.2870 8 6 4.0301 2.8180 0.0349 9 7 3.5101 1.4434 0.0006 10 6 4.0375 0.7102 -1.1579 11 6 5.5113 0.3744 -0.9211 12 1 6.0605 1.2884 -0.6951 13 6 6.0950 -0.2736 -2.1781 14 6 5.6305 -0.5965 0.2553 15 6 7.0860 -0.8315 0.5672 16 1 7.8497 -0.3375 -0.0152 17 6 7.4427 -1.6724 1.6000 18 7 6.5128 -2.2735 2.3097 19 14 9.2468 -1.9577 1.9915 20 1 10.0873 -1.1714 1.0532 21 1 9.5249 -1.5275 3.3854 22 1 9.5624 -3.4015 1.8467 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.8920 1.6546 -2.1386 29 1 0.4387 2.1651 -1.2467 30 1 1.8910 3.1941 -1.2452 31 1 1.8539 1.6177 2.1404 32 1 0.4460 2.2153 1.2291 33 1 3.8814 3.0189 2.1758 34 1 3.8412 4.5619 1.2877 35 1 5.1196 2.7944 0.0602 36 1 3.6984 3.3553 -0.8537 37 1 3.9445 1.3274 -2.0515 38 1 3.4719 -0.2118 -1.2926 39 1 5.6127 -1.2363 -2.3482 40 1 5.9215 0.3761 -3.0359 41 1 7.1667 -0.4225 -2.0460 42 1 5.1573 -1.5432 -0.0053 43 1 5.1358 -0.1714 1.1288 44 1 6.7638 -2.8653 3.0360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602614708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:30:09 Heat of formation + Delta-G solvation = -75.278878 kcal Electronic energy + Delta-G solvation = -20834.220390 eV Core-core repulsion = 17978.311608 eV Total energy + Delta-G solvation = -2855.908782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39883 -37.95654 -36.59594 -34.92513 -33.74889 -30.74254 -29.59466 -28.84193 -27.79252 -25.87789 -25.50649 -24.35360 -22.62563 -20.66765 -19.37586 -18.46151 -17.64646 -17.20645 -16.59654 -16.32293 -16.05105 -15.55680 -15.21033 -15.15474 -14.62968 -14.42532 -14.05013 -13.90943 -13.55139 -13.43004 -13.27434 -12.85070 -12.77474 -12.67508 -12.62541 -12.30134 -12.26335 -12.20088 -12.09118 -11.71955 -11.58367 -11.43289 -11.16699 -10.87820 -10.86014 -10.46976 -10.41964 -9.04612 -8.11046 -6.19245 1.39232 1.39868 1.52108 2.44432 2.84258 2.96221 3.21884 3.73249 3.89985 3.98435 4.06995 4.16317 4.26340 4.36842 4.42160 4.46929 4.53746 4.55419 4.65014 4.68789 4.74386 4.77512 4.83658 4.86224 4.92734 4.96800 5.00670 5.08055 5.14508 5.23609 5.32703 5.35302 5.44102 5.49126 5.51734 5.66969 5.94760 6.03585 6.13594 6.24682 6.32211 6.39757 6.99568 7.47928 9.00369 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.023237 B = 0.005864 C = 0.005788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.704687 B = 4773.708865 C = 4836.494301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.075 3.925 4 C -0.165 4.165 5 C 0.074 3.926 6 O -0.392 6.392 7 C 0.065 3.935 8 C 0.020 3.980 9 N -0.539 5.539 10 C 0.071 3.929 11 C -0.077 4.077 12 H 0.050 0.950 13 C -0.126 4.126 14 C 0.053 3.947 15 C -0.527 4.527 16 H 0.055 0.945 17 C -0.001 4.001 18 N -0.933 5.933 19 Si 0.954 3.046 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.281 1.281 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.119 0.881 33 H 0.042 0.958 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.062 0.938 41 H 0.044 0.956 42 H -0.023 1.023 43 H 0.000 1.000 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 9.826 -6.778 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.014 4.014 4 C -0.224 4.224 5 C -0.003 4.003 6 O -0.310 6.310 7 C -0.012 4.012 8 C -0.108 4.108 9 N -0.264 5.264 10 C -0.056 4.056 11 C -0.096 4.096 12 H 0.068 0.932 13 C -0.184 4.184 14 C 0.015 3.985 15 C -0.565 4.565 16 H 0.073 0.927 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.780 3.220 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.207 1.207 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.060 0.940 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.063 0.937 42 H -0.005 1.005 43 H 0.018 0.982 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.124 9.646 -6.208 15.979 hybrid contribution 1.118 -0.530 -0.071 1.239 sum -10.006 9.116 -6.279 14.921 Atomic orbital electron populations 1.21851 0.93239 1.02503 1.02791 1.21559 0.97325 0.94409 1.01709 1.21745 0.87216 0.96257 0.96229 1.22327 1.02690 1.00354 0.97024 1.22813 0.99280 0.82585 0.95573 1.87901 1.20652 1.27599 1.94875 1.22707 0.80518 1.01645 0.96328 1.22775 1.00657 0.88851 0.98497 1.62252 1.06815 1.14238 1.43058 1.22147 0.95546 0.97542 0.90394 1.21073 0.94181 0.98230 0.96077 0.93183 1.21616 1.00567 0.99770 0.96433 1.18789 0.94209 0.92244 0.93217 1.21766 0.94072 1.25900 1.14771 0.92668 1.25881 1.01478 0.96091 0.96371 1.70125 1.34354 1.31387 1.21522 0.85559 0.80559 0.77866 0.78014 1.18720 1.20769 1.20687 0.91068 0.92092 0.91727 0.92088 0.93618 0.92734 0.90128 0.92522 0.94203 0.86337 0.93984 0.86326 0.90536 0.93082 0.94104 0.91333 0.93999 0.91874 0.93663 1.00499 0.98191 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.21 71.98 0.66 -2.23 16 2 C -0.11 -3.09 4.75 30.59 0.15 -2.95 16 3 C 0.08 2.07 0.46 3.54 0.00 2.07 16 4 C -0.17 -3.78 7.35 71.98 0.53 -3.25 16 5 C 0.07 1.99 5.25 72.02 0.38 2.37 16 6 O -0.39 -11.08 10.28 -148.98 -1.53 -12.61 16 7 C 0.06 1.80 7.01 72.01 0.50 2.30 16 8 C 0.02 0.60 5.07 86.31 0.44 1.04 16 9 N -0.54 -18.02 3.82 -845.78 -3.23 -21.25 16 10 C 0.07 2.42 3.36 86.30 0.29 2.71 16 11 C -0.08 -3.13 2.36 -10.80 -0.03 -3.16 16 12 H 0.05 2.08 6.59 -2.39 -0.02 2.06 16 13 C -0.13 -4.64 8.91 71.98 0.64 -4.00 16 14 C 0.05 2.79 4.39 29.85 0.13 2.92 16 15 C -0.53 -30.20 8.48 25.60 0.22 -29.98 16 16 H 0.06 3.06 7.06 -2.91 -0.02 3.04 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 19 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 23 H 0.07 1.19 6.43 -2.39 -0.02 1.18 16 24 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.06 1.15 6.51 -2.39 -0.02 1.14 16 26 H 0.06 1.76 6.05 -2.39 -0.01 1.74 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.05 1.25 6.86 -2.39 -0.02 1.23 16 29 H 0.08 1.52 6.43 -2.39 -0.02 1.50 16 30 H 0.06 1.35 6.07 -2.39 -0.01 1.34 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 2.52 6.62 -2.39 -0.02 2.51 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.12 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.08 2.45 6.58 -2.39 -0.02 2.43 16 36 H 0.05 1.37 6.39 -2.38 -0.02 1.36 16 37 H 0.04 1.22 7.20 -2.39 -0.02 1.21 16 38 H 0.07 2.41 5.51 -2.39 -0.01 2.40 16 39 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.78 7.12 -2.39 -0.02 1.76 16 42 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 43 H 0.00 -0.02 7.63 -2.38 -0.02 -0.04 16 44 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -65.89 322.80 2.88 -63.01 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.95 Total: 13.03 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.38 Total: -31.77 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.95 Total: -78.99 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -1.53 Total: -12.61 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.89 2.88 -63.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.271 kcal (2) G-P(sol) polarization free energy of solvation -65.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds