Wall clock time and date at job start Sun Mar 29 2020 23:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.53006 * 109.46985 * 240.00032 * 2 1 3 5 5 C 1.53004 * 109.47335 * 120.00273 * 2 1 3 6 6 N 1.46897 * 109.46951 * 35.19783 * 5 2 1 7 7 C 1.46894 * 111.00243 * 288.03821 * 6 5 2 8 8 C 1.50699 * 109.47385 * 314.60470 * 7 6 5 9 9 H 1.07991 * 120.00288 * 4.58330 * 8 7 6 10 10 C 1.37878 * 119.99833 * 184.58211 * 8 7 6 11 11 N 1.31513 * 120.00320 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00137 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47053 * 89.99784 * 12 10 8 14 14 H 1.48495 * 109.46959 * 209.99915 * 12 10 8 15 15 H 1.48498 * 109.46898 * 329.99508 * 12 10 8 16 16 C 1.46894 * 111.00048 * 52.00221 * 6 5 2 17 17 C 1.53002 * 109.47386 * 62.51256 * 16 6 5 18 18 H 1.08998 * 112.84932 * 314.66926 * 17 16 6 19 19 C 1.53775 * 113.61261 * 85.86647 * 17 16 6 20 20 C 1.53958 * 87.02193 * 139.95103 * 19 17 16 21 21 H 1.08995 * 113.53596 * 89.18367 * 20 19 17 22 22 O 1.42893 * 113.74463 * 220.05572 * 20 19 17 23 23 C 1.53776 * 87.10803 * 334.63559 * 20 19 17 24 24 H 1.09006 * 109.46993 * 298.45496 * 1 2 3 25 25 H 1.08997 * 109.47241 * 58.45508 * 1 2 3 26 26 H 1.09003 * 109.46868 * 178.45780 * 1 2 3 27 27 H 1.08997 * 109.47492 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46945 * 299.99875 * 3 2 1 29 29 H 1.08996 * 109.47091 * 59.99952 * 3 2 1 30 30 H 1.08999 * 109.46905 * 328.31930 * 4 2 1 31 31 H 1.09000 * 109.47181 * 88.32246 * 4 2 1 32 32 H 1.08998 * 109.47132 * 208.32069 * 4 2 1 33 33 H 1.08999 * 109.46582 * 275.20071 * 5 2 1 34 34 H 1.09000 * 109.47313 * 155.20133 * 5 2 1 35 35 H 1.09001 * 109.46568 * 74.60620 * 7 6 5 36 36 H 1.09005 * 109.47260 * 194.59856 * 7 6 5 37 37 H 0.96998 * 120.00839 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.47073 * 302.51544 * 16 6 5 39 39 H 1.09000 * 109.47348 * 182.51633 * 16 6 5 40 40 H 1.08998 * 113.61368 * 254.52806 * 19 17 16 41 41 H 1.09004 * 113.62012 * 25.43167 * 19 17 16 42 42 H 0.96703 * 114.00338 * 277.59683 * 22 20 19 43 43 H 1.09004 * 113.61520 * 270.81275 * 23 20 19 44 44 H 1.09001 * 113.61599 * 139.90762 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.1362 -1.8321 1.5765 7 6 -0.1388 -1.3340 2.1093 8 6 0.1293 -0.2578 3.1297 9 1 1.1399 0.0796 3.3059 10 6 -0.9158 0.2961 3.8382 11 7 -0.6820 1.2349 4.7290 12 14 -2.6640 -0.2880 3.5339 13 1 -2.9732 -1.4198 4.4441 14 1 -3.6102 0.8271 3.7914 15 1 -2.7980 -0.7354 2.1243 16 6 0.9175 -2.6947 0.4078 17 6 2.2462 -3.3214 -0.0195 18 1 3.0649 -2.6023 -0.0441 19 6 2.5870 -4.6172 0.7353 20 6 3.0996 -5.1695 -0.6073 21 1 4.1525 -4.9565 -0.7919 22 8 2.7630 -6.5399 -0.8319 23 6 2.1418 -4.1798 -1.2912 24 1 -0.3633 0.4897 0.9036 25 1 -0.3633 0.5376 -0.8758 26 1 -0.3633 -1.0273 -0.0277 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.3365 -1.5057 -1.5285 31 1 2.1327 -0.0080 -2.0683 32 1 3.0140 -1.1640 -1.0411 33 1 2.0733 -0.0218 2.0844 34 1 3.0407 -1.1104 1.0610 35 1 -0.7365 -0.9227 1.2959 36 1 -0.6812 -2.1540 2.5800 37 1 -1.4171 1.6243 5.2278 38 1 0.5159 -2.0999 -0.4127 39 1 0.2100 -3.4830 0.6652 40 1 3.3688 -4.4933 1.4846 41 1 1.7120 -5.1427 1.1180 42 1 3.3618 -7.1673 -0.4042 43 1 1.1448 -4.5853 -1.4636 44 1 2.5647 -3.7031 -2.1755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420917607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:26 Heat of formation + Delta-G solvation = 23.880984 kcal Electronic energy + Delta-G solvation = -20970.895991 eV Core-core repulsion = 18119.287104 eV Total energy + Delta-G solvation = -2851.608887 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18619 -38.41253 -35.02485 -33.72741 -32.24052 -29.16090 -27.89709 -26.53451 -26.04954 -25.47016 -24.43072 -21.77167 -19.97733 -19.42502 -18.27515 -17.44564 -16.96868 -15.43939 -15.31528 -14.79478 -14.47527 -14.14180 -13.93364 -13.52826 -13.22266 -12.82349 -12.46634 -12.28331 -12.12109 -11.90047 -11.55987 -11.35813 -11.22306 -11.02354 -10.96292 -10.71475 -10.68722 -10.59558 -10.38939 -10.17959 -10.05700 -9.79870 -9.60803 -9.56438 -9.53798 -8.86520 -8.54396 -6.93233 -6.03926 -4.00049 3.29494 3.37272 3.39235 4.21100 4.43047 4.65822 4.78756 4.89073 4.95540 5.18766 5.28088 5.33723 5.41585 5.49968 5.59455 5.80662 5.85683 5.91871 5.95115 6.03658 6.08668 6.11572 6.13172 6.19286 6.21852 6.30815 6.39536 6.43273 6.55891 6.58963 6.70483 6.75446 6.85345 6.91757 7.10799 7.19502 7.22697 7.62138 7.63420 8.03855 8.21091 8.70930 9.02807 9.57980 11.08022 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.006783 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.543291 B = 4127.067196 C = 4813.409111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.063 3.937 6 N -0.521 5.521 7 C 0.116 3.884 8 C -0.508 4.508 9 H 0.084 0.916 10 C 0.070 3.930 11 N -0.901 5.901 12 Si 0.871 3.129 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.041 3.959 17 C -0.101 4.101 18 H 0.097 0.903 19 C -0.152 4.152 20 C 0.070 3.930 21 H 0.076 0.924 22 O -0.564 6.564 23 C -0.125 4.125 24 H 0.094 0.906 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.038 0.962 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.373 0.627 43 H 0.086 0.914 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 -7.903 -12.040 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.093 4.093 3 C -0.192 4.192 4 C -0.207 4.207 5 C -0.065 4.065 6 N -0.243 5.243 7 C -0.010 4.010 8 C -0.546 4.546 9 H 0.102 0.898 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.699 3.301 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.192 1.192 16 C -0.087 4.087 17 C -0.120 4.120 18 H 0.115 0.885 19 C -0.190 4.190 20 C 0.011 3.989 21 H 0.094 0.906 22 O -0.369 6.369 23 C -0.163 4.163 24 H 0.112 0.888 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.220 0.780 43 H 0.105 0.895 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.367 -7.803 -11.864 15.562 hybrid contribution -0.882 -0.007 -0.253 0.917 sum 5.485 -7.810 -12.116 15.424 Atomic orbital electron populations 1.22963 0.95021 1.02192 1.02267 1.21134 0.96111 0.95729 0.96376 1.21830 0.99875 0.95906 1.01588 1.22491 1.00867 0.99994 0.97392 1.22461 0.94511 0.93088 0.96423 1.62121 1.15563 1.18998 1.27620 1.21229 0.88011 0.95331 0.96414 1.21184 0.95822 1.18100 1.19444 0.89794 1.24888 0.98593 0.94900 0.94776 1.69887 1.31981 1.27172 1.25001 0.86925 0.85465 0.78524 0.79232 1.20327 1.21450 1.19157 1.22593 0.95221 0.96809 0.94077 1.22467 0.99514 0.95406 0.94569 0.88462 1.23628 1.01814 0.97121 0.96436 1.23493 0.97540 0.80871 0.96983 0.90642 1.86519 1.57130 1.16245 1.77014 1.23119 1.00145 0.95555 0.97517 0.88757 0.95143 0.90990 0.93544 0.93879 0.91807 0.91930 0.94008 0.92803 0.88257 0.93125 0.94533 0.96833 0.92761 0.92415 0.92230 0.91516 0.89568 0.77990 0.89533 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 6.15 37.16 0.23 -2.87 16 2 C -0.09 -1.52 0.77 -154.51 -0.12 -1.64 16 3 C -0.13 -2.14 8.19 37.16 0.30 -1.83 16 4 C -0.15 -2.08 7.30 37.16 0.27 -1.81 16 5 C 0.06 1.18 4.55 -3.82 -0.02 1.16 16 6 N -0.52 -10.37 4.89 -236.08 -1.15 -11.53 16 7 C 0.12 2.68 3.29 -4.98 -0.02 2.67 16 8 C -0.51 -13.66 7.93 -34.44 -0.27 -13.93 16 9 H 0.08 2.44 5.76 -52.49 -0.30 2.13 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 11 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 12 Si 0.87 21.26 27.38 -169.99 -4.65 16.61 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.27 -6.22 6.68 56.52 0.38 -5.84 16 16 C 0.04 0.67 3.78 -3.83 -0.01 0.66 16 17 C -0.10 -1.38 2.25 -89.81 -0.20 -1.58 16 18 H 0.10 1.34 4.41 -51.93 -0.23 1.11 16 19 C -0.15 -2.01 7.48 -25.83 -0.19 -2.21 16 20 C 0.07 0.80 5.21 -25.83 -0.13 0.67 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 22 O -0.56 -6.58 13.68 -35.23 -0.48 -7.06 16 23 C -0.13 -1.53 7.24 -25.92 -0.19 -1.71 16 24 H 0.09 2.06 5.51 -51.93 -0.29 1.77 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 1.33 3.29 -51.93 -0.17 1.16 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.63 8.11 -51.92 -0.42 0.20 16 29 H 0.06 1.15 8.12 -51.93 -0.42 0.73 16 30 H 0.06 0.86 4.92 -51.93 -0.26 0.60 16 31 H 0.04 0.54 7.84 -51.93 -0.41 0.13 16 32 H 0.05 0.70 5.67 -51.93 -0.29 0.40 16 33 H 0.10 2.18 4.94 -51.93 -0.26 1.92 16 34 H 0.05 0.86 6.08 -51.93 -0.32 0.54 16 35 H 0.04 0.84 2.68 -59.22 -0.16 0.69 16 36 H 0.01 0.34 7.32 -51.93 -0.38 -0.04 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 0.94 2.57 -51.93 -0.13 0.81 16 39 H 0.06 1.02 7.85 -51.93 -0.41 0.62 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.25 7.92 -51.93 -0.41 0.84 16 42 H 0.37 2.70 9.12 45.56 0.42 3.11 16 43 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 309.62 15.07 4.67 4.67 Total: -1.00 -29.57 309.62 -7.43 -37.00 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.13 Total: 7.06 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -0.45 Total: -20.57 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.38 Total: -37.71 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.48 Total: -7.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.65 Total: 16.61 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.57 -7.43 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420917607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.880 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds