Wall clock time and date at job start Sun Mar 29 2020 23:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 C 1.53006 * 109.46985 * 240.00032 * 2 1 3 5 5 C 1.53004 * 109.47335 * 120.00273 * 2 1 3 6 6 N 1.46897 * 109.46951 * 35.19783 * 5 2 1 7 7 C 1.46894 * 111.00243 * 288.03821 * 6 5 2 8 8 C 1.50699 * 109.47385 * 314.60470 * 7 6 5 9 9 H 1.07991 * 120.00288 * 4.58330 * 8 7 6 10 10 C 1.37878 * 119.99833 * 184.58211 * 8 7 6 11 11 N 1.31513 * 120.00320 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 120.00137 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47053 * 89.99784 * 12 10 8 14 14 H 1.48495 * 109.46959 * 209.99915 * 12 10 8 15 15 H 1.48498 * 109.46898 * 329.99508 * 12 10 8 16 16 C 1.46894 * 111.00048 * 52.00221 * 6 5 2 17 17 C 1.53002 * 109.47386 * 62.51256 * 16 6 5 18 18 H 1.08998 * 112.84932 * 314.66926 * 17 16 6 19 19 C 1.53775 * 113.61261 * 85.86647 * 17 16 6 20 20 C 1.53958 * 87.02193 * 139.95103 * 19 17 16 21 21 H 1.08995 * 113.53596 * 89.18367 * 20 19 17 22 22 O 1.42893 * 113.74463 * 220.05572 * 20 19 17 23 23 C 1.53776 * 87.10803 * 334.63559 * 20 19 17 24 24 H 1.09006 * 109.46993 * 298.45496 * 1 2 3 25 25 H 1.08997 * 109.47241 * 58.45508 * 1 2 3 26 26 H 1.09003 * 109.46868 * 178.45780 * 1 2 3 27 27 H 1.08997 * 109.47492 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.46945 * 299.99875 * 3 2 1 29 29 H 1.08996 * 109.47091 * 59.99952 * 3 2 1 30 30 H 1.08999 * 109.46905 * 328.31930 * 4 2 1 31 31 H 1.09000 * 109.47181 * 88.32246 * 4 2 1 32 32 H 1.08998 * 109.47132 * 208.32069 * 4 2 1 33 33 H 1.08999 * 109.46582 * 275.20071 * 5 2 1 34 34 H 1.09000 * 109.47313 * 155.20133 * 5 2 1 35 35 H 1.09001 * 109.46568 * 74.60620 * 7 6 5 36 36 H 1.09005 * 109.47260 * 194.59856 * 7 6 5 37 37 H 0.96998 * 120.00839 * 180.02562 * 11 10 8 38 38 H 1.09005 * 109.47073 * 302.51544 * 16 6 5 39 39 H 1.09000 * 109.47348 * 182.51633 * 16 6 5 40 40 H 1.08998 * 113.61368 * 254.52806 * 19 17 16 41 41 H 1.09004 * 113.62012 * 25.43167 * 19 17 16 42 42 H 0.96703 * 114.00338 * 277.59683 * 22 20 19 43 43 H 1.09004 * 113.61520 * 270.81275 * 23 20 19 44 44 H 1.09001 * 113.61599 * 139.90762 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.1362 -1.8321 1.5765 7 6 -0.1388 -1.3340 2.1093 8 6 0.1293 -0.2578 3.1297 9 1 1.1399 0.0796 3.3059 10 6 -0.9158 0.2961 3.8382 11 7 -0.6820 1.2349 4.7290 12 14 -2.6640 -0.2880 3.5339 13 1 -2.9732 -1.4198 4.4441 14 1 -3.6102 0.8271 3.7914 15 1 -2.7980 -0.7354 2.1243 16 6 0.9175 -2.6947 0.4078 17 6 2.2462 -3.3214 -0.0195 18 1 3.0649 -2.6023 -0.0441 19 6 2.5870 -4.6172 0.7353 20 6 3.0996 -5.1695 -0.6073 21 1 4.1525 -4.9565 -0.7919 22 8 2.7630 -6.5399 -0.8319 23 6 2.1418 -4.1798 -1.2912 24 1 -0.3633 0.4897 0.9036 25 1 -0.3633 0.5376 -0.8758 26 1 -0.3633 -1.0273 -0.0277 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 1.3365 -1.5057 -1.5285 31 1 2.1327 -0.0080 -2.0683 32 1 3.0140 -1.1640 -1.0411 33 1 2.0733 -0.0218 2.0844 34 1 3.0407 -1.1104 1.0610 35 1 -0.7365 -0.9227 1.2959 36 1 -0.6812 -2.1540 2.5800 37 1 -1.4171 1.6243 5.2278 38 1 0.5159 -2.0999 -0.4127 39 1 0.2100 -3.4830 0.6652 40 1 3.3688 -4.4933 1.4846 41 1 1.7120 -5.1427 1.1180 42 1 3.3618 -7.1673 -0.4042 43 1 1.1448 -4.5853 -1.4636 44 1 2.5647 -3.7031 -2.1755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420917607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:25 Heat of formation + Delta-G solvation = 2.005663 kcal Electronic energy + Delta-G solvation = -20971.844576 eV Core-core repulsion = 18119.287104 eV Total energy + Delta-G solvation = -2852.557473 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51265 -39.53314 -35.98662 -35.38625 -34.14690 -30.78920 -29.35461 -27.92987 -27.49405 -26.46856 -25.91537 -23.20534 -21.56754 -20.50375 -19.65671 -18.97151 -18.31045 -16.74013 -16.67059 -16.47670 -15.92662 -15.57622 -15.31280 -14.81088 -14.69016 -14.27623 -14.03629 -13.49902 -13.28537 -13.19456 -13.00513 -12.85184 -12.75685 -12.39305 -12.24698 -12.20683 -12.14046 -11.99432 -11.79929 -11.65588 -11.44709 -11.34342 -11.13367 -10.90755 -10.75316 -10.68781 -10.50800 -8.51312 -8.21685 -6.21275 1.33551 1.34980 1.44567 2.36438 3.10694 3.26931 3.51961 3.76547 3.84261 3.97710 4.00870 4.05635 4.12151 4.22720 4.46397 4.60186 4.66567 4.75732 4.80488 4.87368 4.90823 4.92576 4.93018 4.95799 4.97163 4.99828 5.12255 5.15435 5.19842 5.25104 5.31577 5.35464 5.45609 5.48954 5.59467 5.64827 5.67395 5.73102 6.11355 6.52852 6.84163 6.86761 6.97097 7.40206 8.92915 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.006783 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.543291 B = 4127.067196 C = 4813.409111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.068 3.932 6 N -0.534 5.534 7 C 0.124 3.876 8 C -0.500 4.500 9 H 0.051 0.949 10 C 0.012 3.988 11 N -0.949 5.949 12 Si 0.932 3.068 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.248 1.248 16 C 0.043 3.957 17 C -0.098 4.098 18 H 0.103 0.897 19 C -0.159 4.159 20 C 0.082 3.918 21 H 0.100 0.900 22 O -0.580 6.580 23 C -0.121 4.121 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.001 0.999 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.392 0.608 43 H 0.077 0.923 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.321 -9.333 -14.979 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.199 4.199 5 C -0.060 4.060 6 N -0.257 5.257 7 C -0.002 4.002 8 C -0.538 4.538 9 H 0.069 0.931 10 C -0.185 4.185 11 N -0.591 5.591 12 Si 0.757 3.243 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.172 1.172 16 C -0.084 4.084 17 C -0.117 4.117 18 H 0.121 0.879 19 C -0.197 4.197 20 C 0.023 3.977 21 H 0.118 0.882 22 O -0.388 6.388 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.242 0.758 43 H 0.096 0.904 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.974 -9.260 -14.820 18.815 hybrid contribution -0.968 0.425 0.691 1.263 sum 6.006 -8.835 -14.129 17.713 Atomic orbital electron populations 1.22835 0.96458 1.01860 1.01072 1.21089 0.94886 0.96261 0.96901 1.21786 1.00973 0.95331 1.00731 1.22382 1.01450 1.00187 0.95877 1.22344 0.95406 0.92198 0.96015 1.62031 1.13999 1.19668 1.29996 1.21060 0.89864 0.93508 0.95781 1.21417 0.94352 1.18387 1.19612 0.93129 1.25684 1.02917 0.95142 0.94754 1.70033 1.33219 1.29088 1.26769 0.85939 0.80373 0.77964 0.80048 1.20113 1.21196 1.17167 1.22653 0.97075 0.95915 0.92788 1.22409 0.97773 0.95535 0.95936 0.87890 1.23637 1.01247 0.97185 0.97611 1.23432 0.98523 0.80843 0.94893 0.88191 1.86471 1.58359 1.16677 1.77309 1.23073 1.00150 0.95287 0.97337 0.92842 0.93152 0.90994 0.91797 0.92055 0.95277 0.91495 0.92270 0.91381 0.92538 0.91018 0.93363 0.98131 0.92828 0.91537 0.93249 0.91690 0.91380 0.75799 0.90450 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 6.15 71.98 0.44 -5.49 16 2 C -0.09 -2.84 0.77 -52.18 -0.04 -2.88 16 3 C -0.13 -4.01 8.19 71.98 0.59 -3.43 16 4 C -0.14 -3.38 7.30 71.98 0.53 -2.85 16 5 C 0.07 2.54 4.55 86.30 0.39 2.93 16 6 N -0.53 -21.23 4.89 -900.81 -4.40 -25.63 16 7 C 0.12 5.83 3.29 85.56 0.28 6.11 16 8 C -0.50 -28.01 7.93 25.60 0.20 -27.81 16 9 H 0.05 3.14 5.76 -2.92 -0.02 3.12 16 10 C 0.01 0.68 5.47 84.66 0.46 1.14 16 11 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 12 Si 0.93 44.61 27.38 68.60 1.88 46.48 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 15 H -0.25 -10.98 6.68 99.48 0.66 -10.32 16 16 C 0.04 1.35 3.78 86.30 0.33 1.68 16 17 C -0.10 -2.43 2.25 -10.27 -0.02 -2.45 16 18 H 0.10 2.46 4.41 -2.39 -0.01 2.45 16 19 C -0.16 -3.90 7.48 31.18 0.23 -3.67 16 20 C 0.08 1.60 5.21 31.18 0.16 1.77 16 21 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 22 O -0.58 -11.81 13.68 -148.98 -2.04 -13.85 16 23 C -0.12 -2.51 7.24 31.12 0.23 -2.28 16 24 H 0.05 2.36 5.51 -2.38 -0.01 2.34 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 2.55 3.29 -2.39 -0.01 2.54 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.65 8.11 -2.38 -0.02 1.63 16 29 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.07 1.55 4.92 -2.39 -0.01 1.54 16 31 H 0.06 1.24 7.84 -2.39 -0.02 1.22 16 32 H 0.07 1.45 5.67 -2.39 -0.01 1.44 16 33 H 0.06 2.60 4.94 -2.39 -0.01 2.59 16 34 H 0.07 2.33 6.08 -2.39 -0.01 2.32 16 35 H 0.05 2.21 2.68 -9.24 -0.02 2.18 16 36 H 0.00 0.03 7.32 -2.38 -0.02 0.02 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.07 2.00 2.57 -2.38 -0.01 1.99 16 39 H 0.05 1.65 7.85 -2.39 -0.02 1.63 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.07 1.92 7.92 -2.39 -0.02 1.90 16 42 H 0.39 4.52 9.12 -74.06 -0.68 3.85 16 43 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 44 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.28 309.62 -0.21 -66.49 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.27 Total: 22.65 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 3.78 Total: -37.22 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -4.10 Total: -84.54 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -2.04 Total: -13.85 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.48 kcal Total: -66.28 -0.21 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420917607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.491 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds