Wall clock time and date at job start Sun Mar 29 2020 23:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 H 1.09006 * 109.50671 * 305.08474 * 3 2 1 5 5 C 1.53094 * 109.50698 * 184.99764 * 3 2 1 6 6 N 1.47013 * 109.25991 * 183.21482 * 5 3 2 7 7 C 1.46904 * 111.00399 * 182.39416 * 6 5 3 8 8 C 1.52999 * 109.47156 * 75.76982 * 7 6 5 9 9 H 1.08994 * 109.47504 * 303.88711 * 8 7 6 10 10 C 1.53006 * 109.46778 * 63.88693 * 8 7 6 11 11 C 1.52999 * 109.47065 * 183.87942 * 8 7 6 12 12 C 1.50700 * 109.47296 * 175.00254 * 11 8 7 13 13 H 1.08009 * 119.99854 * 0.02562 * 12 11 8 14 14 C 1.37875 * 120.00436 * 180.02562 * 12 11 8 15 15 N 1.31511 * 119.99811 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00259 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46652 * 60.00294 * 16 14 12 18 18 H 1.48496 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47263 * 300.00700 * 16 14 12 20 20 C 1.47007 * 110.75236 * 58.61600 * 6 5 3 21 21 C 1.53097 * 109.25924 * 301.38200 * 20 6 5 22 22 H 1.08998 * 109.54517 * 296.89528 * 21 20 6 23 23 C 1.53007 * 109.50610 * 176.78302 * 21 20 6 24 24 O 1.43015 * 109.25425 * 56.85259 * 21 20 6 25 25 H 1.09000 * 109.47553 * 300.00661 * 1 2 3 26 26 H 1.09005 * 109.47362 * 60.00490 * 1 2 3 27 27 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47085 * 239.99884 * 2 1 3 29 29 H 1.08998 * 109.46822 * 119.99891 * 2 1 3 30 30 H 1.09003 * 109.50900 * 63.27728 * 5 3 2 31 31 H 1.09004 * 109.54427 * 303.17075 * 5 3 2 32 32 H 1.08998 * 109.47474 * 195.77983 * 7 6 5 33 33 H 1.09004 * 109.46882 * 315.77773 * 7 6 5 34 34 H 1.09001 * 109.46649 * 305.38239 * 10 8 7 35 35 H 1.09002 * 109.47080 * 65.37721 * 10 8 7 36 36 H 1.09001 * 109.47078 * 185.38230 * 10 8 7 37 37 H 1.08997 * 109.47491 * 295.00768 * 11 8 7 38 38 H 1.09006 * 109.46988 * 55.01095 * 11 8 7 39 39 H 0.97003 * 119.99911 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.50697 * 61.32312 * 20 6 5 41 41 H 1.09009 * 109.50725 * 181.44656 * 20 6 5 42 42 H 1.08994 * 109.47008 * 300.21843 * 23 21 20 43 43 H 1.09000 * 109.46916 * 60.22102 * 23 21 20 44 44 H 1.09001 * 109.46425 * 180.21935 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6044 1.9825 -0.8408 5 6 3.5657 1.4453 -0.1257 6 7 4.0562 2.8290 -0.0477 7 6 5.5140 2.8815 -0.2212 8 6 5.8591 2.6850 -1.6988 9 1 5.4287 1.7476 -2.0509 10 6 5.2882 3.8467 -2.5147 11 6 7.3793 2.6429 -1.8662 12 6 7.7183 2.3274 -3.3002 13 1 6.9283 2.1727 -4.0204 14 6 9.0367 2.2361 -3.6931 15 7 9.9986 2.4239 -2.8161 16 14 9.4568 1.8442 -5.4705 17 1 8.8906 2.8934 -6.3558 18 1 10.9323 1.8023 -5.6327 19 1 8.8814 0.5249 -5.8359 20 6 3.6538 3.4535 1.2209 21 6 2.1271 3.4306 1.3331 22 1 1.6936 4.0292 0.5319 23 6 1.7057 4.0065 2.6866 24 8 1.6664 2.0812 1.2239 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8529 1.0108 -1.0833 31 1 3.9994 0.8592 0.6846 32 1 5.8850 3.8503 0.1129 33 1 5.9787 2.0913 0.3686 34 1 4.2193 3.9361 -2.3206 35 1 5.7881 4.7720 -2.2283 36 1 5.4504 3.6594 -3.5761 37 1 7.8014 3.6114 -1.5977 38 1 7.7952 1.8726 -1.2167 39 1 10.9262 2.3593 -3.0924 40 1 4.0883 2.8997 2.0531 41 1 4.0053 4.4850 1.2463 42 1 2.1407 3.4083 3.4872 43 1 2.0572 5.0349 2.7692 44 1 0.6188 3.9863 2.7673 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602451663.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:44 Heat of formation + Delta-G solvation = -72.416268 kcal Electronic energy + Delta-G solvation = -19915.044579 eV Core-core repulsion = 17059.259930 eV Total energy + Delta-G solvation = -2855.784650 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81082 -36.63684 -34.61053 -33.97501 -32.00116 -31.36459 -28.37886 -27.05600 -26.30668 -24.56135 -23.40912 -21.90425 -21.24179 -20.30500 -18.84548 -16.65017 -16.43304 -15.88678 -15.31180 -14.90075 -14.60316 -14.42538 -13.87298 -13.74354 -13.45593 -13.07492 -12.76543 -12.39636 -12.29049 -12.18148 -11.97050 -11.69105 -11.60277 -11.35644 -11.10767 -10.98353 -10.91939 -10.84436 -10.70423 -10.33735 -10.32493 -10.27190 -9.61317 -9.52210 -9.09590 -8.92544 -8.31602 -8.07724 -5.96559 -3.97716 3.35011 3.39335 3.41848 3.64340 4.00167 4.49086 4.70228 4.91063 4.95807 5.07201 5.10270 5.25987 5.30545 5.38607 5.39500 5.48806 5.53090 5.59344 5.70241 5.77686 5.82061 5.87518 5.89767 5.98414 5.99582 6.03772 6.16710 6.17975 6.24472 6.38004 6.53492 6.71094 7.00904 7.11698 7.19577 7.24002 7.34543 7.39244 7.70032 7.86335 8.03526 8.47807 9.08403 9.65617 11.15003 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.004390 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.190983 B = 6376.117021 C = 6979.583765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.096 3.904 4 H 0.065 0.935 5 C 0.023 3.977 6 N -0.534 5.534 7 C 0.061 3.939 8 C -0.078 4.078 9 H 0.054 0.946 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.512 4.512 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.023 3.977 21 C 0.091 3.909 22 H 0.064 0.936 23 C -0.143 4.143 24 O -0.381 6.381 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.015 0.985 38 H 0.012 0.988 39 H 0.260 0.740 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.319 -0.090 8.744 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.038 3.962 4 H 0.083 0.917 5 C -0.105 4.105 6 N -0.258 5.258 7 C -0.066 4.066 8 C -0.097 4.097 9 H 0.072 0.928 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.105 4.105 21 C 0.033 3.967 22 H 0.082 0.918 23 C -0.200 4.200 24 O -0.301 6.301 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.434 0.096 8.525 19.407 hybrid contribution 1.084 -0.538 -0.504 1.311 sum -16.350 -0.442 8.021 18.216 Atomic orbital electron populations 1.21690 0.95256 1.01296 1.02177 1.21523 0.96633 0.94413 1.02824 1.22182 0.93254 0.93698 0.87076 0.91698 1.22824 0.95203 0.90088 1.02378 1.62248 1.14414 1.16805 1.32327 1.22351 0.84577 1.00600 0.99115 1.21173 0.99283 0.98045 0.91154 0.92769 1.21570 0.98765 0.97610 0.99959 1.19132 0.88131 0.96991 0.96788 1.21191 0.91606 1.47375 0.94873 0.92654 1.25014 0.96636 0.95618 0.97235 1.69956 0.99523 1.50363 1.33897 0.86692 0.77112 0.78913 0.85495 1.20261 1.21373 1.20318 1.22809 0.95968 1.00431 0.91324 1.22105 0.92802 0.83743 0.98067 0.91791 1.21735 1.02035 1.00558 0.95700 1.87925 1.76841 1.26218 1.39096 0.92116 0.92899 0.92922 0.90377 0.91314 0.89237 0.94380 0.91361 0.95048 0.93829 0.94209 0.93027 0.96622 0.97009 0.93058 0.94446 0.89962 0.92033 0.91042 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.16 0.36 -1.03 16 2 C -0.12 -1.24 5.64 -26.74 -0.15 -1.39 16 3 C 0.10 1.21 2.80 -26.69 -0.07 1.14 16 4 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.02 0.34 4.75 -3.71 -0.02 0.32 16 6 N -0.53 -8.21 3.97 -234.31 -0.93 -9.14 16 7 C 0.06 1.07 4.40 -3.82 -0.02 1.06 16 8 C -0.08 -1.61 2.39 -90.62 -0.22 -1.82 16 9 H 0.05 1.14 6.78 -51.93 -0.35 0.79 16 10 C -0.12 -2.39 8.86 37.16 0.33 -2.06 16 11 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 12 C -0.51 -14.42 8.48 -34.44 -0.29 -14.71 16 13 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 16 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.02 0.31 4.88 -3.72 -0.02 0.29 16 21 C 0.09 1.08 3.43 -26.68 -0.09 0.99 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.14 -1.33 9.57 37.16 0.36 -0.98 16 24 O -0.38 -5.03 9.66 -35.23 -0.34 -5.37 16 25 H 0.06 0.61 7.83 -51.93 -0.41 0.21 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 31 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.07 1.20 7.86 -51.93 -0.41 0.79 16 33 H 0.03 0.57 7.99 -51.93 -0.41 0.16 16 34 H 0.04 0.77 7.57 -51.93 -0.39 0.38 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.02 8.02 -51.92 -0.42 0.60 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -29.92 341.96 -8.99 -38.91 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -8.54 Total: -3.82 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -0.05 Total: -16.11 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.19 Total: -35.53 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.34 Total: -5.37 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.92 -8.99 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602451663.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.505 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds