Wall clock time and date at job start Mon Mar 30 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 C 1.50697 * 109.47050 * 294.99857 * 4 2 1 6 6 H 1.08007 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99937 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99815 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47402 * 59.99796 * 9 7 5 11 11 H 1.48503 * 109.46994 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47024 * 299.99706 * 9 7 5 13 13 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 14 14 N 1.46898 * 109.47386 * 64.99548 * 13 2 1 15 15 C 1.46901 * 111.00283 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.47252 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.54301 * 59.99792 * 16 15 14 18 18 C 1.53175 * 109.54034 * 299.82118 * 16 15 14 19 19 C 1.53100 * 109.15756 * 183.24346 * 18 16 15 20 20 O 1.42909 * 109.48834 * 57.47437 * 19 18 16 21 21 C 1.42903 * 114.09494 * 298.88979 * 20 19 18 22 22 C 1.53093 * 109.41612 * 61.15619 * 21 20 19 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 27 27 H 1.09000 * 109.46818 * 175.00170 * 4 2 1 28 28 H 0.96996 * 119.99901 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47346 * 184.99897 * 13 2 1 30 30 H 1.09002 * 109.47196 * 304.99671 * 13 2 1 31 31 H 1.00895 * 111.00526 * 303.95502 * 14 13 2 32 32 H 1.09002 * 109.46761 * 300.00031 * 15 14 13 33 33 H 1.08993 * 109.46846 * 60.00149 * 15 14 13 34 34 H 1.08996 * 109.46922 * 60.00303 * 17 16 15 35 35 H 1.09002 * 109.46578 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47091 * 299.99592 * 17 16 15 37 37 H 1.09005 * 109.52269 * 303.05648 * 18 16 15 38 38 H 1.09002 * 109.52687 * 63.24858 * 18 16 15 39 39 H 1.08999 * 109.40602 * 297.49318 * 19 18 16 40 40 H 1.09003 * 109.49472 * 177.50844 * 19 18 16 41 41 H 1.09000 * 109.47864 * 301.17478 * 21 20 19 42 42 H 1.09000 * 109.48726 * 181.14855 * 21 20 19 43 43 H 1.08993 * 109.52537 * 182.48153 * 22 21 20 44 44 H 1.09001 * 109.56902 * 62.32470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0800 0.9741 2.3757 7 6 1.9925 -0.4024 3.7283 8 7 2.6756 -1.5194 3.8511 9 14 1.4977 0.5620 5.2497 10 1 0.0177 0.6686 5.3087 11 1 1.9928 -0.1381 6.4622 12 1 2.0899 1.9224 5.1877 13 6 2.0401 -0.7211 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1247 -0.6270 -3.6673 16 6 1.7023 0.1912 -4.8893 17 6 2.3116 1.5919 -4.8029 18 6 0.1749 0.2984 -4.9309 19 6 -0.2416 1.0485 -6.1990 20 8 0.2711 0.3674 -7.3459 21 6 1.6970 0.2802 -7.3836 22 6 2.1914 -0.5026 -6.1643 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6055 -1.7198 1.2950 27 1 3.1264 -0.7994 1.2055 28 1 2.9228 -1.8424 4.7316 29 1 3.1264 -0.7994 -1.2057 30 1 1.6055 -1.7197 -1.2952 31 1 0.6529 0.1794 -2.4754 32 1 3.2116 -0.7048 -3.6406 33 1 1.6904 -1.6247 -3.7297 34 1 3.3985 1.5143 -4.7764 35 1 2.0103 2.1735 -5.6742 36 1 1.9604 2.0857 -3.8969 37 1 -0.2603 -0.7009 -4.9409 38 1 -0.1763 0.8410 -4.0532 39 1 0.1591 2.0617 -6.1685 40 1 -1.3294 1.0894 -6.2566 41 1 2.1230 1.2834 -7.3686 42 1 2.0060 -0.2324 -8.2945 43 1 3.2809 -0.5325 -6.1678 44 1 1.7990 -1.5190 -6.1994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602563607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:08 Heat of formation + Delta-G solvation = -97.682981 kcal Electronic energy + Delta-G solvation = -19615.119008 eV Core-core repulsion = 16758.238711 eV Total energy + Delta-G solvation = -2856.880297 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.96097 -38.48669 -36.71934 -34.86266 -33.23580 -32.02517 -29.18256 -28.60643 -27.71763 -26.27882 -24.67435 -24.10969 -22.91498 -20.70577 -19.45546 -18.54321 -17.29322 -16.92263 -16.74344 -16.60721 -15.95005 -15.75084 -15.43475 -15.16707 -14.69442 -14.59890 -14.36666 -13.82808 -13.53036 -13.31866 -13.15917 -12.90154 -12.78897 -12.74611 -12.59099 -12.24488 -12.21854 -12.11772 -12.00483 -11.91910 -11.49463 -11.26726 -11.11585 -11.06596 -10.90133 -10.53122 -10.29383 -9.31690 -8.17427 -6.26818 1.40304 1.43185 1.50808 2.42177 3.00512 3.15949 3.23398 3.71600 3.78019 3.90817 4.13848 4.20833 4.22733 4.33159 4.33840 4.44897 4.45333 4.64675 4.69423 4.75845 4.77805 4.79169 4.86933 4.88503 4.89497 5.00723 5.02815 5.13228 5.17004 5.23520 5.24324 5.34912 5.40217 5.47767 5.54884 5.60536 5.79782 5.89080 6.09163 6.30669 6.31172 6.51922 6.89180 7.41526 8.94567 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050648 B = 0.003434 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.706121 B = 8151.093613 C = 8356.231179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 H 0.058 0.942 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.683 5.683 15 C 0.070 3.930 16 C -0.056 4.056 17 C -0.133 4.133 18 C -0.147 4.147 19 C 0.060 3.940 20 O -0.404 6.404 21 C 0.058 3.942 22 C -0.143 4.143 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.046 0.954 26 H -0.012 1.012 27 H -0.015 1.015 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.019 0.981 31 H 0.343 0.657 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 4.793 -21.994 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.094 4.094 3 H 0.076 0.924 4 C -0.005 4.005 5 C -0.568 4.568 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.315 5.315 15 C -0.059 4.059 16 C -0.056 4.056 17 C -0.190 4.190 18 C -0.185 4.185 19 C -0.016 4.016 20 O -0.323 6.323 21 C -0.018 4.018 22 C -0.181 4.181 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.007 0.993 27 H 0.004 0.996 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.163 0.837 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.113 5.029 -21.980 22.762 hybrid contribution -0.297 -0.756 1.463 1.673 sum -3.410 4.273 -20.517 21.233 Atomic orbital electron populations 1.21647 0.94997 1.00573 1.01116 1.21010 0.96185 0.99011 0.93157 0.92390 1.18997 0.94149 0.94534 0.92779 1.21625 1.34533 1.08609 0.92059 0.91996 1.25967 0.95247 0.96090 1.02703 1.70095 1.40285 1.22987 1.24350 0.85552 0.78972 0.78763 0.78086 1.19120 1.21075 1.19249 1.21827 0.99492 0.94132 0.89792 1.60539 1.20038 1.49973 1.00990 1.22005 1.00150 0.94666 0.89127 1.20554 0.95184 0.96343 0.93524 1.21807 1.00379 0.94960 1.01839 1.22249 0.95380 1.01514 0.99314 1.22674 0.99755 0.94951 0.84260 1.87893 1.21870 1.78564 1.43983 1.22710 0.80511 1.00139 0.98428 1.22202 1.01948 0.99642 0.94281 0.91497 0.94254 0.93523 0.99349 0.99624 0.92942 0.92611 0.96289 0.83691 0.91503 0.95853 0.92939 0.92159 0.92234 0.92044 0.90218 0.92131 0.88119 0.92106 0.87826 0.89848 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 8.78 71.98 0.63 -3.93 16 2 C -0.07 -3.06 2.54 -10.79 -0.03 -3.09 16 3 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.03 1.75 4.45 29.85 0.13 1.89 16 5 C -0.53 -30.17 8.41 25.60 0.22 -29.95 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 8 N -0.94 -57.74 13.29 21.45 0.28 -57.46 16 9 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.08 2.67 5.14 86.30 0.44 3.11 16 14 N -0.68 -18.73 5.72 -513.89 -2.94 -21.67 16 15 C 0.07 1.63 4.66 86.30 0.40 2.03 16 16 C -0.06 -1.04 0.60 -52.06 -0.03 -1.07 16 17 C -0.13 -2.46 7.78 71.98 0.56 -1.90 16 18 C -0.15 -2.64 4.50 30.69 0.14 -2.50 16 19 C 0.06 0.99 6.57 72.02 0.47 1.46 16 20 O -0.40 -7.88 10.77 -148.98 -1.60 -9.49 16 21 C 0.06 0.89 6.57 72.01 0.47 1.36 16 22 C -0.14 -2.32 4.92 30.68 0.15 -2.17 16 23 H 0.07 1.93 6.68 -2.39 -0.02 1.91 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.83 6.95 -2.39 -0.02 1.81 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.34 8.70 5.11 -89.70 -0.46 8.24 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.95 5.02 -2.39 -0.01 0.94 16 36 H 0.06 1.28 7.61 -2.39 -0.02 1.26 16 37 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.08 1.42 6.76 -2.39 -0.02 1.40 16 39 H 0.06 0.91 6.61 -2.39 -0.02 0.89 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 0.83 6.60 -2.39 -0.02 0.81 16 42 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -64.10 331.68 2.28 -61.82 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.49 Total: 14.60 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 4.02 Total: -34.46 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.65 Total: -79.13 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.60 Total: -9.49 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.10 2.28 -61.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602563607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.861 kcal (2) G-P(sol) polarization free energy of solvation -64.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds