Wall clock time and date at job start Mon Mar 30 2020 00:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.47105 * 2 1 4 4 C 1.52994 * 109.47624 * 240.00140 * 2 1 3 5 5 C 1.50704 * 109.47292 * 64.99438 * 4 2 1 6 6 H 1.07999 * 119.99741 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99830 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99477 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00461 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47056 * 89.99492 * 9 7 5 11 11 H 1.48492 * 109.47394 * 209.99798 * 9 7 5 12 12 H 1.48504 * 109.46969 * 329.99470 * 9 7 5 13 13 C 1.53003 * 109.47217 * 119.99567 * 2 1 3 14 14 N 1.46894 * 109.47039 * 287.19003 * 13 2 1 15 15 C 1.47805 * 111.00024 * 78.64965 * 14 13 2 16 16 C 1.45856 * 112.92558 * 153.85570 * 15 14 13 17 17 C 1.54513 * 111.58717 * 61.32125 * 16 15 14 18 18 C 1.50460 * 108.96064 * 282.75973 * 17 16 15 19 19 H 1.08998 * 108.77686 * 331.29894 * 18 17 16 20 20 C 1.52998 * 108.76962 * 213.12833 * 18 17 16 21 21 O 1.42909 * 109.47078 * 65.00534 * 20 18 17 22 22 C 1.54434 * 112.96047 * 92.01646 * 18 17 16 23 23 C 1.44269 * 111.00519 * 316.67448 * 14 13 2 24 24 H 1.09000 * 109.47544 * 313.74247 * 1 2 3 25 25 H 1.09004 * 109.46620 * 73.74274 * 1 2 3 26 26 H 1.08995 * 109.46735 * 193.73707 * 1 2 3 27 27 H 1.08999 * 109.47861 * 185.00117 * 4 2 1 28 28 H 1.09003 * 109.46922 * 304.99905 * 4 2 1 29 29 H 0.97003 * 119.99784 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.46966 * 167.18559 * 13 2 1 31 31 H 1.09004 * 109.46567 * 47.18984 * 13 2 1 32 32 H 1.09005 * 108.79287 * 32.96543 * 15 14 13 33 33 H 1.08999 * 108.70229 * 274.68188 * 15 14 13 34 34 H 1.09005 * 109.06192 * 300.77883 * 16 15 14 35 35 H 1.09003 * 109.00011 * 181.82737 * 16 15 14 36 36 H 1.09000 * 109.57073 * 42.63889 * 17 16 15 37 37 H 1.09005 * 109.57085 * 162.88747 * 17 16 15 38 38 H 1.09002 * 109.46967 * 184.99918 * 20 18 17 39 39 H 1.08999 * 109.47521 * 305.00058 * 20 18 17 40 40 H 0.96695 * 113.99872 * 179.97438 * 21 20 18 41 41 H 1.08996 * 108.93276 * 197.69969 * 22 18 17 42 42 H 1.08997 * 108.82213 * 79.18875 * 22 18 17 43 43 H 1.09005 * 108.97656 * 339.95478 * 23 14 13 44 44 H 1.09000 * 108.98311 * 98.75422 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9934 -0.4017 -3.7282 8 7 1.6450 0.2772 -4.7994 9 14 2.9640 -1.9882 -3.9027 10 1 2.0249 -3.1326 -4.0200 11 1 3.8129 -1.9179 -5.1190 12 1 3.8256 -2.1753 -2.7078 13 6 2.0400 -0.7212 1.2493 14 7 1.8173 0.1257 2.4287 15 6 0.4079 0.0605 2.8691 16 6 0.2431 0.3438 4.2904 17 6 0.7218 1.7694 4.6452 18 6 2.2253 1.7803 4.7020 19 1 2.5727 0.7879 4.9892 20 6 2.6703 2.7822 5.7693 21 8 2.2389 2.3315 7.0551 22 6 2.8764 2.1605 3.3542 23 6 2.1724 1.4970 2.1552 24 1 -0.3634 0.7105 0.7424 25 1 -0.3633 0.2877 -0.9866 26 1 -0.3632 -0.9982 0.2440 27 1 3.1264 -0.7994 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 1.8930 -0.0453 -5.6799 30 1 3.1059 -0.9228 1.1427 31 1 1.5026 -1.6617 1.3706 32 1 0.0214 -0.9376 2.6629 33 1 -0.1709 0.7857 2.2972 34 1 0.8205 -0.3792 4.8668 35 1 -0.8106 0.2468 4.5517 36 1 0.3800 2.4696 3.8829 37 1 0.3176 2.0595 5.6151 38 1 3.7572 2.8650 5.7592 39 1 2.2297 3.7567 5.5592 40 1 2.4874 2.9193 7.7815 41 1 3.9213 1.8506 3.3664 42 1 2.8320 3.2431 3.2353 43 1 2.8385 1.5254 1.2929 44 1 1.2672 2.0579 1.9222 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877554607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:09 Heat of formation + Delta-G solvation = -61.651835 kcal Electronic energy + Delta-G solvation = -20149.243241 eV Core-core repulsion = 17293.925372 eV Total energy + Delta-G solvation = -2855.317869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77085 -37.47025 -35.52151 -33.36761 -32.56653 -31.70706 -28.22269 -27.33396 -26.33212 -24.62780 -23.23699 -22.05161 -20.39478 -19.73272 -18.50758 -17.40522 -16.78507 -15.92181 -15.59526 -15.07750 -14.73732 -14.36830 -14.04048 -13.86368 -13.54108 -12.99717 -12.89097 -12.53743 -12.30716 -12.12461 -11.78561 -11.76615 -11.34556 -11.03818 -11.00011 -10.75996 -10.57842 -10.53321 -10.47087 -10.31559 -10.11588 -10.02914 -9.77703 -9.64950 -9.64922 -9.11389 -8.52570 -7.80997 -6.03351 -4.00436 3.31160 3.38784 3.42656 4.05814 4.20100 4.46185 4.77795 4.92894 4.95694 5.18136 5.26489 5.30382 5.36265 5.43020 5.45307 5.50134 5.59219 5.71363 5.78543 5.85019 5.87652 6.01852 6.06556 6.07706 6.17212 6.23786 6.31414 6.37341 6.39714 6.43275 6.48774 6.56444 6.73307 6.90481 7.08766 7.27404 7.35501 7.45376 7.50925 7.52187 7.81270 8.55562 9.01519 9.59767 11.10069 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.040971 B = 0.004274 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.240068 B = 6549.045527 C = 6681.097793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 H 0.070 0.930 4 C -0.007 4.007 5 C -0.514 4.514 6 H 0.072 0.928 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.055 3.945 14 N -0.526 5.526 15 C 0.047 3.953 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.076 4.076 19 H 0.081 0.919 20 C 0.075 3.925 21 O -0.573 6.573 22 C -0.102 4.102 23 C 0.052 3.948 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.015 0.985 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.374 0.626 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 3.480 20.748 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.088 0.912 4 C -0.045 4.045 5 C -0.552 4.552 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.072 4.072 14 N -0.249 5.249 15 C -0.081 4.081 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.094 4.094 19 H 0.099 0.901 20 C -0.002 4.002 21 O -0.378 6.378 22 C -0.141 4.141 23 C -0.077 4.077 24 H 0.058 0.942 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.220 0.780 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.563 2.795 20.580 20.776 hybrid contribution 0.258 -0.025 -0.715 0.761 sum 0.821 2.770 19.865 20.074 Atomic orbital electron populations 1.22047 0.96094 0.99764 1.02169 1.21791 0.95787 1.00396 0.95543 0.91194 1.19567 0.95804 0.95751 0.93334 1.21140 1.35317 1.09536 0.89216 0.91035 1.25037 0.95644 0.96973 0.95947 1.69921 1.47162 1.39376 0.98019 0.86791 0.80648 0.84263 0.77655 1.20402 1.21496 1.19011 1.22551 1.01169 0.95750 0.87776 1.61817 1.20492 1.08710 1.33854 1.21291 0.89300 1.01426 0.96041 1.20596 1.00441 0.97145 0.96879 1.21340 0.95070 0.96936 1.01144 1.20862 0.95908 0.99709 0.92956 0.90066 1.22389 0.97403 0.96922 0.83533 1.86503 1.81750 1.52823 1.16676 1.21964 0.99618 0.99047 0.93459 1.21946 0.99858 0.89084 0.96792 0.94219 0.91162 0.94074 0.96719 0.97157 0.92831 0.91086 0.91500 0.91804 0.93574 0.91604 0.92229 0.92541 0.91601 0.94024 0.94044 0.77968 0.91998 0.92438 0.90551 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.16 37.16 0.30 -2.34 16 2 C -0.12 -2.22 1.95 -90.62 -0.18 -2.39 16 3 H 0.07 1.39 5.57 -51.92 -0.29 1.10 16 4 C -0.01 -0.16 3.50 -27.88 -0.10 -0.25 16 5 C -0.51 -14.45 8.76 -34.44 -0.30 -14.75 16 6 H 0.07 2.16 7.41 -52.49 -0.39 1.78 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.19 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.05 0.90 5.04 -3.83 -0.02 0.88 16 14 N -0.53 -7.58 4.45 -239.55 -1.07 -8.65 16 15 C 0.05 0.62 3.65 -6.71 -0.02 0.59 16 16 C -0.11 -1.33 5.53 -29.32 -0.16 -1.49 16 17 C -0.11 -1.22 5.03 -27.21 -0.14 -1.36 16 18 C -0.08 -0.86 2.04 -91.14 -0.19 -1.04 16 19 H 0.08 1.07 7.39 -51.93 -0.38 0.69 16 20 C 0.08 0.71 6.20 37.16 0.23 0.94 16 21 O -0.57 -5.59 12.89 -35.23 -0.45 -6.04 16 22 C -0.10 -1.19 5.51 -25.42 -0.14 -1.33 16 23 C 0.05 0.73 3.82 -4.67 -0.02 0.71 16 24 H 0.04 0.64 5.29 -51.93 -0.27 0.37 16 25 H 0.07 1.49 6.67 -51.93 -0.35 1.15 16 26 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 27 H 0.01 0.35 7.14 -51.93 -0.37 -0.02 16 28 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 29 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 31 H 0.07 1.06 7.32 -51.93 -0.38 0.68 16 32 H 0.06 0.85 7.43 -51.93 -0.39 0.47 16 33 H 0.05 0.64 4.66 -51.93 -0.24 0.40 16 34 H 0.07 0.82 7.59 -51.93 -0.39 0.43 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.66 7.15 -51.93 -0.37 0.28 16 37 H 0.07 0.75 7.15 -51.93 -0.37 0.38 16 38 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.37 1.90 9.12 45.56 0.42 2.31 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.60 7.99 -51.93 -0.41 0.18 16 43 H 0.08 1.17 6.09 -51.93 -0.32 0.85 16 44 H 0.04 0.59 6.50 -51.93 -0.34 0.25 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -30.88 319.03 -8.37 -39.24 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.93 Total: 0.71 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: -0.83 Total: -20.05 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.29 Total: -35.84 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.45 Total: -6.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.88 -8.37 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877554607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.408 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds