Wall clock time and date at job start Mon Mar 30 2020 00:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47460 * 2 1 4 4 C 1.53007 * 109.47149 * 119.99282 * 2 1 3 5 5 C 1.50694 * 109.47299 * 295.00360 * 4 2 1 6 6 H 1.08000 * 119.99890 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99991 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99932 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00112 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46751 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46756 * 119.99839 * 9 7 5 12 12 H 1.48492 * 109.47032 * 240.00108 * 9 7 5 13 13 C 1.53003 * 109.47501 * 239.99444 * 2 1 3 14 14 N 1.46897 * 109.46543 * 61.00657 * 13 2 1 15 15 C 1.44119 * 110.83438 * 55.55131 * 14 13 2 16 16 C 1.54076 * 111.90247 * 219.35578 * 15 14 13 17 17 C 1.54290 * 112.28615 * 318.94169 * 16 15 14 18 18 C 1.50454 * 113.03352 * 318.30367 * 17 16 15 19 19 C 1.54501 * 108.84724 * 92.16199 * 18 17 16 20 20 C 1.45870 * 111.59900 * 282.79533 * 19 18 17 21 21 H 1.09001 * 108.79162 * 300.43789 * 20 19 18 22 22 C 1.52999 * 108.79570 * 182.09300 * 20 19 18 23 23 O 1.42893 * 109.47203 * 303.35871 * 22 20 19 24 24 H 1.09001 * 109.46731 * 60.00331 * 1 2 3 25 25 H 1.09006 * 109.47119 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47073 * 300.00590 * 1 2 3 27 27 H 1.09003 * 109.46610 * 55.00424 * 4 2 1 28 28 H 1.08999 * 109.47206 * 174.99414 * 4 2 1 29 29 H 0.97002 * 119.99874 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.46466 * 301.01435 * 13 2 1 31 31 H 1.08997 * 109.47227 * 181.01236 * 13 2 1 32 32 H 1.08998 * 108.99629 * 98.75810 * 15 14 13 33 33 H 1.08996 * 108.97946 * 339.94803 * 15 14 13 34 34 H 1.08998 * 108.91904 * 198.22242 * 16 15 14 35 35 H 1.08996 * 108.84467 * 79.61615 * 16 15 14 36 36 H 1.09001 * 108.76873 * 197.38723 * 17 16 15 37 37 H 1.09004 * 108.76621 * 79.22256 * 17 16 15 38 38 H 1.09003 * 109.57672 * 332.35548 * 18 17 16 39 39 H 1.08998 * 109.68254 * 212.03321 * 18 17 16 40 40 H 1.09003 * 109.05878 * 162.25237 * 19 18 17 41 41 H 1.09004 * 109.05802 * 43.33450 * 19 18 17 42 42 H 1.09000 * 109.46788 * 63.36400 * 22 20 19 43 43 H 1.08999 * 109.47123 * 183.36008 * 22 20 19 44 44 H 0.96702 * 113.99950 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9923 -0.4020 3.7284 8 7 2.6747 -1.5195 3.8514 9 14 1.4987 0.5632 5.2497 10 1 0.7422 1.7747 4.8433 11 1 0.6440 -0.2853 6.1184 12 1 2.7170 0.9671 5.9965 13 6 2.0401 -0.7214 -1.2492 14 7 1.5704 -0.0150 -2.4485 15 6 1.9669 1.3702 -2.4158 16 6 0.8594 2.2978 -2.9514 17 6 0.1601 1.7153 -4.1973 18 6 1.1188 1.0812 -5.1681 19 6 1.2412 -0.4232 -4.8381 20 6 2.0934 -0.6505 -3.6763 21 1 3.0852 -0.2490 -3.8844 22 6 2.2122 -2.1573 -3.4393 23 8 0.9078 -2.7187 -3.2801 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6054 -1.7197 1.2953 28 1 3.1263 -0.7994 1.2057 29 1 2.9213 -1.8427 4.7321 30 1 1.6619 -1.7437 -1.2581 31 1 3.1299 -0.7371 -1.2401 32 1 2.8615 1.4976 -3.0253 33 1 2.1962 1.6491 -1.3874 34 1 1.2997 3.2605 -3.2111 35 1 0.1172 2.4490 -2.1677 36 1 -0.3752 2.5171 -4.7060 37 1 -0.5614 0.9642 -3.8754 38 1 2.0962 1.5554 -5.0785 39 1 0.7457 1.2029 -6.1849 40 1 1.6652 -0.9427 -5.6974 41 1 0.2484 -0.8249 -4.6351 42 1 2.7060 -2.6215 -4.2929 43 1 2.7980 -2.3383 -2.5381 44 1 0.9066 -3.6734 -3.1264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895149727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:20:42 Heat of formation + Delta-G solvation = -59.327812 kcal Electronic energy + Delta-G solvation = -20611.323066 eV Core-core repulsion = 17756.105974 eV Total energy + Delta-G solvation = -2855.217092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.86190 -36.39506 -35.76014 -33.41015 -32.55523 -31.58257 -27.63007 -26.84519 -26.55546 -24.54282 -22.92809 -22.46064 -20.04430 -19.74979 -18.31624 -17.35205 -16.44911 -15.95268 -15.35359 -14.64414 -14.52438 -14.38017 -13.94228 -13.64381 -13.41527 -13.14685 -12.56141 -12.29748 -12.19272 -12.00797 -11.72444 -11.36526 -11.09312 -10.98861 -10.82130 -10.68306 -10.56314 -10.39821 -10.31087 -10.21955 -10.12453 -10.07205 -9.75381 -9.43258 -9.05777 -8.86515 -8.30147 -7.83207 -5.95361 -3.95886 3.33589 3.41156 3.45513 4.09361 4.43598 4.50798 4.74175 4.99838 5.16900 5.27520 5.35032 5.36972 5.40841 5.44547 5.48473 5.61304 5.69150 5.80852 5.83626 5.94879 5.95311 6.07089 6.16762 6.27300 6.34578 6.38256 6.43652 6.54440 6.57768 6.61245 6.65867 6.82084 7.12626 7.27773 7.29639 7.53208 7.63008 7.73364 7.76487 7.89867 8.05510 8.50202 9.10723 9.67395 11.16295 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029019 B = 0.005283 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.659947 B = 5298.415187 C = 5898.713963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.507 5.507 15 C 0.041 3.959 16 C -0.106 4.106 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.107 4.107 20 C 0.089 3.911 21 H 0.045 0.955 22 C 0.067 3.933 23 O -0.554 6.554 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.049 0.951 27 H 0.016 0.984 28 H 0.010 0.990 29 H 0.258 0.742 30 H 0.079 0.921 31 H 0.020 0.980 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.055 0.945 44 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 1.770 -17.706 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.103 4.103 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.069 4.069 14 N -0.231 5.231 15 C -0.087 4.087 16 C -0.145 4.145 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.018 4.018 21 H 0.063 0.937 22 C -0.011 4.011 23 O -0.358 6.358 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.039 0.961 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.859 2.255 -17.675 17.915 hybrid contribution 1.014 -0.126 1.051 1.466 sum -0.845 2.129 -16.624 16.781 Atomic orbital electron populations 1.21545 0.95533 1.00677 0.99911 1.21354 0.96261 0.98737 0.93971 0.92540 1.19114 0.95737 0.95605 0.90497 1.21275 1.34319 1.08204 0.90973 0.92562 1.25015 0.95380 0.95095 0.99065 1.69977 1.39345 1.21269 1.23184 0.86588 0.78218 0.80176 0.83350 1.19753 1.21096 1.21162 1.22464 0.96116 0.99002 0.89277 1.61656 1.59090 1.01493 1.00910 1.22071 0.95661 0.89322 1.01691 1.21911 0.98228 0.96976 0.97366 1.21169 0.98478 0.99747 0.95197 1.21317 0.99788 0.95703 0.98323 1.20531 1.02174 0.95945 0.95796 1.20643 0.96588 0.92354 0.92264 0.93707 1.22516 0.85300 0.93822 0.99469 1.86604 1.27686 1.26224 1.95278 0.93796 0.94099 0.93146 0.96590 0.97124 0.93218 0.90244 0.96140 0.95285 0.90124 0.92994 0.91859 0.93628 0.91308 0.92615 0.92596 0.92721 0.90075 0.94174 0.92726 0.78195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.86 37.16 0.33 -2.09 16 2 C -0.08 -1.76 2.05 -90.62 -0.19 -1.95 16 3 H 0.06 1.19 5.79 -51.93 -0.30 0.89 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.04 3.10 -3.82 -0.01 1.02 16 14 N -0.51 -7.79 3.51 -231.57 -0.81 -8.60 16 15 C 0.04 0.60 4.87 -4.75 -0.02 0.58 16 16 C -0.11 -1.39 6.14 -25.49 -0.16 -1.55 16 17 C -0.11 -1.31 5.42 -27.33 -0.15 -1.46 16 18 C -0.11 -1.27 5.60 -27.21 -0.15 -1.42 16 19 C -0.11 -1.28 4.56 -29.32 -0.13 -1.41 16 20 C 0.09 1.18 2.01 -70.59 -0.14 1.04 16 21 H 0.05 0.58 7.24 -51.93 -0.38 0.20 16 22 C 0.07 0.83 5.79 37.16 0.22 1.04 16 23 O -0.55 -7.19 11.96 -35.23 -0.42 -7.61 16 24 H 0.04 0.81 7.51 -51.93 -0.39 0.42 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.08 1.46 5.90 -51.93 -0.31 1.15 16 31 H 0.02 0.37 7.91 -51.93 -0.41 -0.04 16 32 H 0.03 0.40 6.51 -51.93 -0.34 0.06 16 33 H 0.08 1.32 5.05 -51.93 -0.26 1.05 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.89 8.02 -51.93 -0.42 0.47 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 38 H 0.06 0.62 7.15 -51.93 -0.37 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 41 H 0.08 1.12 6.89 -51.93 -0.36 0.76 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.72 5.92 -51.93 -0.31 0.41 16 44 H 0.37 3.30 9.12 45.56 0.42 3.72 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -30.67 324.15 -8.61 -39.27 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.05 Total: 0.38 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.92 Total: -18.78 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.08 Total: -35.01 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.42 Total: -7.61 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.67 -8.61 -39.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895149727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.054 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds