Wall clock time and date at job start Sun Mar 29 2020 23:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42911 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 C 1.52998 * 109.46641 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47184 * 67.04005 * 4 3 2 6 6 C 1.46896 * 110.99978 * 289.94265 * 5 4 3 7 7 C 1.50699 * 109.47251 * 299.66228 * 6 5 4 8 8 H 1.08006 * 119.99705 * 354.88926 * 7 6 5 9 9 C 1.37878 * 120.00234 * 174.88059 * 7 6 5 10 10 N 1.31509 * 119.99889 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99912 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47568 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47156 * 120.00017 * 11 9 7 14 14 H 1.48501 * 109.47351 * 240.00260 * 11 9 7 15 15 C 1.46901 * 111.00050 * 53.89632 * 5 4 3 16 16 C 1.53003 * 109.47062 * 66.04604 * 15 5 4 17 17 C 1.52998 * 109.46822 * 179.97438 * 16 15 5 18 18 C 1.54964 * 110.92595 * 71.54243 * 17 16 15 19 19 C 1.54267 * 104.16439 * 156.29320 * 18 17 16 20 20 C 1.53871 * 106.63800 * 336.44539 * 19 18 17 21 21 C 1.54268 * 106.60239 * 359.97438 * 20 19 18 22 22 H 1.08997 * 109.46838 * 59.99541 * 1 2 3 23 23 H 1.08993 * 109.47278 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46425 * 300.00006 * 1 2 3 25 25 H 1.09002 * 109.46788 * 60.00221 * 3 2 1 26 26 H 1.08995 * 109.46830 * 299.99971 * 3 2 1 27 27 H 1.08996 * 109.47252 * 307.03658 * 4 3 2 28 28 H 1.09003 * 109.46818 * 187.03593 * 4 3 2 29 29 H 1.09005 * 109.47190 * 59.66241 * 6 5 4 30 30 H 1.08996 * 109.47421 * 179.66441 * 6 5 4 31 31 H 0.97004 * 120.00211 * 180.02562 * 10 9 7 32 32 H 1.09002 * 109.47078 * 306.04778 * 15 5 4 33 33 H 1.09004 * 109.47179 * 186.04771 * 15 5 4 34 34 H 1.09002 * 109.47032 * 60.00146 * 16 15 5 35 35 H 1.08991 * 109.47242 * 299.99927 * 16 15 5 36 36 H 1.09000 * 110.67630 * 308.23655 * 17 16 15 37 37 H 1.08999 * 110.47328 * 37.63813 * 18 17 16 38 38 H 1.09000 * 110.53105 * 274.97582 * 18 17 16 39 39 H 1.09000 * 110.03200 * 217.14082 * 19 18 17 40 40 H 1.09001 * 110.03108 * 95.75195 * 19 18 17 41 41 H 1.09006 * 110.03285 * 119.25603 * 20 19 18 42 42 H 1.08996 * 110.03383 * 240.64088 * 20 19 18 43 43 H 1.08997 * 110.48923 * 142.28417 * 21 20 19 44 44 H 1.08998 * 110.48790 * 264.80107 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9805 0.6075 -1.2762 6 6 3.6018 -0.8084 -1.3740 7 6 4.2469 -1.5797 -0.2514 8 1 4.9402 -1.0865 0.4138 9 6 3.9518 -2.9147 -0.0735 10 7 3.1079 -3.5152 -0.8838 11 14 4.7510 -3.8704 1.3184 12 1 5.6540 -2.9717 2.0814 13 1 3.6991 -4.3990 2.2236 14 1 5.5347 -5.0000 0.7572 15 6 3.4525 1.3734 -2.4131 16 6 4.0669 2.7746 -2.4135 17 6 3.5174 3.5720 -3.5980 18 6 2.0329 3.9526 -3.3681 19 6 1.8186 5.1927 -4.2603 20 6 3.2040 5.8279 -4.4721 21 6 4.2130 4.9522 -3.7006 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 3.8491 0.5387 0.8194 28 1 3.9783 2.1726 0.1252 29 1 2.5180 -0.9005 -1.3022 30 1 3.9380 -1.2093 -2.3302 31 1 2.9000 -4.4544 -0.7584 32 1 2.3687 1.4519 -2.3264 33 1 3.7067 0.8649 -3.3432 34 1 5.1506 2.6961 -2.5002 35 1 3.8127 3.2830 -1.4836 36 1 3.6325 3.0116 -4.5258 37 1 1.8610 4.2017 -2.3210 38 1 1.3771 3.1400 -3.6805 39 1 1.1555 5.9005 -3.7629 40 1 1.3943 4.8941 -5.2190 41 1 3.4525 5.8368 -5.5334 42 1 3.2130 6.8442 -4.0782 43 1 5.1475 4.8681 -4.2552 44 1 4.3952 5.3645 -2.7081 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303218708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:25 Heat of formation + Delta-G solvation = -58.577575 kcal Electronic energy + Delta-G solvation = -20195.875111 eV Core-core repulsion = 17340.690552 eV Total energy + Delta-G solvation = -2855.184559 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.75677 -37.74329 -35.71954 -32.66853 -31.47941 -28.92464 -28.71099 -27.35448 -25.85507 -24.90832 -22.96458 -21.85969 -20.29687 -19.77909 -19.06450 -16.31448 -15.97467 -15.86899 -15.74363 -15.10164 -14.45182 -14.26928 -14.16845 -13.48317 -13.47766 -13.31773 -12.50461 -12.33826 -11.85466 -11.76284 -11.42155 -11.30956 -11.09035 -11.05351 -10.99764 -10.81614 -10.67783 -10.62771 -10.47643 -10.41460 -10.34865 -10.11408 -9.93718 -9.59131 -8.94084 -8.87346 -8.22177 -6.93339 -5.82256 -3.79505 3.41207 3.48061 3.52646 4.46406 4.56433 4.60993 4.65690 4.71767 5.12644 5.31852 5.40486 5.51770 5.54562 5.60808 5.62507 5.65509 5.68457 5.73589 5.76573 5.82989 5.85210 5.88002 5.97195 6.00644 6.06678 6.11556 6.19034 6.21881 6.26417 6.30351 6.34597 6.48243 6.67342 6.70628 6.90462 7.49725 7.84860 7.94608 7.98699 8.27258 8.43134 8.79064 9.26821 9.81378 11.29340 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029054 B = 0.005034 C = 0.004646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.491376 B = 5560.912313 C = 6025.664349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.022 3.978 4 C 0.062 3.938 5 N -0.534 5.534 6 C 0.181 3.819 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.057 3.943 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.050 3.950 16 C -0.106 4.106 17 C -0.091 4.091 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.120 4.120 22 H 0.028 0.972 23 H 0.081 0.919 24 H 0.027 0.973 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.015 0.985 31 H 0.256 0.744 32 H 0.028 0.972 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.609 16.394 -3.956 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.261 6.261 3 C -0.056 4.056 4 C -0.067 4.067 5 N -0.257 5.257 6 C 0.056 3.944 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.539 5.539 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.078 4.078 16 C -0.144 4.144 17 C -0.110 4.110 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.157 4.157 22 H 0.046 0.954 23 H 0.100 0.900 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.049 16.064 -4.011 16.836 hybrid contribution -0.842 -0.430 0.745 1.204 sum -3.891 15.634 -3.266 16.439 Atomic orbital electron populations 1.22668 0.83823 1.02195 0.98212 1.88483 1.17244 1.25781 1.94578 1.23371 0.97717 0.85979 0.98574 1.22195 0.89289 0.99437 0.95748 1.62314 1.58271 1.05531 0.99582 1.20016 0.97178 0.80572 0.96603 1.21111 1.24501 0.94226 1.13128 0.92471 1.24874 0.95415 0.97724 0.96255 1.69973 1.35132 1.10835 1.37922 0.86585 0.79079 0.79985 0.82542 1.19909 1.21381 1.21356 1.22111 0.96582 0.93451 0.95665 1.21593 1.00820 0.95261 0.96699 1.22152 0.94394 0.95296 0.99134 1.22447 0.96771 0.96986 0.99540 1.22136 0.96974 0.97378 0.99796 1.22124 0.95110 0.98838 1.00145 1.22406 0.97904 0.95245 1.00167 0.95370 0.90024 0.95397 0.94899 0.93906 0.88911 0.91611 0.94551 0.96726 0.93482 0.95395 0.91966 0.91441 0.92421 0.90787 0.91820 0.91824 0.92323 0.92171 0.92192 0.92306 0.91893 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.34 -7.42 7.58 -35.23 -0.27 -7.69 16 3 C 0.02 0.40 5.70 37.16 0.21 0.61 16 4 C 0.06 1.22 5.36 -3.82 -0.02 1.20 16 5 N -0.53 -11.62 4.75 -236.07 -1.12 -12.74 16 6 C 0.18 4.81 4.29 -4.98 -0.02 4.79 16 7 C -0.49 -14.10 8.21 -34.44 -0.28 -14.38 16 8 H 0.06 1.64 6.99 -52.48 -0.37 1.27 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 11 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 12 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 C 0.05 0.91 4.49 -3.82 -0.02 0.89 16 16 C -0.11 -1.52 4.64 -26.73 -0.12 -1.65 16 17 C -0.09 -1.10 2.86 -88.58 -0.25 -1.35 16 18 C -0.12 -1.37 5.71 -25.03 -0.14 -1.51 16 19 C -0.13 -1.22 6.80 -25.61 -0.17 -1.40 16 20 C -0.12 -1.17 6.80 -25.61 -0.17 -1.34 16 21 C -0.12 -1.25 6.27 -25.07 -0.16 -1.41 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.04 0.73 5.79 -51.93 -0.30 0.43 16 27 H 0.09 2.06 6.33 -51.93 -0.33 1.73 16 28 H 0.07 1.10 6.77 -51.93 -0.35 0.75 16 29 H 0.04 1.04 5.29 -51.93 -0.27 0.77 16 30 H 0.01 0.43 8.05 -51.93 -0.42 0.01 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.03 0.51 5.23 -51.93 -0.27 0.24 16 33 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 38 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.67 8.05 -51.93 -0.42 0.26 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -30.86 335.07 -8.87 -39.73 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -8.10 Total: -2.68 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -0.14 Total: -12.37 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.38 Total: -39.37 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.27 Total: -7.69 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.86 -8.87 -39.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303218708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.845 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds