Wall clock time and date at job start Sun Mar 29 2020 23:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00107 * 2 1 4 4 C 1.52999 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.52428 * 300.12298 * 4 3 2 6 6 C 1.53121 * 109.52219 * 179.97438 * 4 3 2 7 7 C 1.53033 * 109.31272 * 182.35674 * 6 4 3 8 8 N 1.46929 * 109.47790 * 59.16034 * 7 6 4 9 9 C 1.46902 * 110.98605 * 174.18153 * 8 7 6 10 10 H 1.08998 * 109.47129 * 66.30421 * 9 8 7 11 11 C 1.53004 * 109.47025 * 186.30028 * 9 8 7 12 12 C 1.52997 * 109.46949 * 306.29890 * 9 8 7 13 13 C 1.50696 * 109.47224 * 302.83261 * 12 9 8 14 14 H 1.07995 * 120.00646 * 5.12526 * 13 12 9 15 15 C 1.37886 * 119.99749 * 185.12503 * 13 12 9 16 16 N 1.31508 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99931 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46955 * 59.99860 * 17 15 13 19 19 H 1.48493 * 109.47178 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47111 * 300.00354 * 17 15 13 21 21 C 1.46850 * 111.21789 * 298.28418 * 8 7 6 22 22 C 1.53035 * 109.52651 * 61.74743 * 21 8 7 23 23 H 1.08999 * 109.46732 * 60.00713 * 1 2 3 24 24 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47473 * 300.00020 * 1 2 3 26 26 H 1.09000 * 109.47256 * 59.99655 * 3 2 1 27 27 H 1.09002 * 109.46901 * 300.00022 * 3 2 1 28 28 H 1.09000 * 109.47285 * 299.87504 * 5 4 3 29 29 H 1.09004 * 109.46781 * 59.87380 * 5 4 3 30 30 H 1.08999 * 109.46972 * 179.87501 * 5 4 3 31 31 H 1.09000 * 109.50125 * 302.32035 * 6 4 3 32 32 H 1.08997 * 109.50453 * 62.39575 * 6 4 3 33 33 H 1.09002 * 109.46380 * 179.21385 * 7 6 4 34 34 H 1.08992 * 109.46466 * 299.18244 * 7 6 4 35 35 H 1.09007 * 109.46940 * 60.00251 * 11 9 8 36 36 H 1.08995 * 109.47299 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.47299 * 299.99944 * 11 9 8 38 38 H 1.08997 * 109.47185 * 62.83563 * 12 9 8 39 39 H 1.09003 * 109.47109 * 182.83110 * 12 9 8 40 40 H 0.97001 * 120.00196 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46254 * 301.72314 * 21 8 7 42 42 H 1.09000 * 109.45205 * 181.75491 * 21 8 7 43 43 H 1.08997 * 109.50655 * 180.88216 * 22 21 8 44 44 H 1.08997 * 109.53735 * 60.77599 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 3.9875 0.4230 1.2482 6 6 4.1595 2.5828 0.0000 7 6 5.6835 2.4568 -0.0587 8 7 6.0683 1.7281 -1.2751 9 6 7.5283 1.7074 -1.4364 10 1 7.9742 1.1192 -0.6344 11 6 7.8835 1.0809 -2.7863 12 6 8.0679 3.1380 -1.3803 13 6 7.3997 3.9690 -2.4452 14 1 6.6055 3.5452 -3.0419 15 6 7.8024 5.2705 -2.6579 16 7 8.7698 5.7864 -1.9318 17 14 6.9737 6.3008 -3.9774 18 1 5.5244 6.4183 -3.6761 19 1 7.5844 7.6540 -4.0050 20 1 7.1531 5.6490 -5.2997 21 6 5.5196 0.3659 -1.2747 22 6 3.9908 0.4304 -1.2518 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.6678 0.9631 2.1394 29 1 3.5427 -0.5722 1.2474 30 1 5.0740 0.3354 1.2467 31 1 3.8065 3.1384 -0.8688 32 1 3.8728 3.1097 0.9100 33 1 6.1299 3.4511 -0.0734 34 1 6.0370 1.9131 0.8173 35 1 7.4377 1.6692 -3.5885 36 1 8.9668 1.0660 -2.9062 37 1 7.4992 0.0617 -2.8263 38 1 7.8589 3.5670 -0.4003 39 1 9.1445 3.1272 -1.5501 40 1 9.0534 6.7019 -2.0816 41 1 5.8739 -0.1680 -0.3930 42 1 5.8476 -0.1578 -2.1725 43 1 3.5841 -0.5808 -1.2356 44 1 3.6346 0.9518 -2.1402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411456453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:07 Heat of formation + Delta-G solvation = -57.056689 kcal Electronic energy + Delta-G solvation = -20549.764929 eV Core-core repulsion = 17694.646321 eV Total energy + Delta-G solvation = -2855.118608 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63349 -37.65074 -35.41522 -32.61203 -30.67469 -30.53029 -27.43486 -27.06918 -26.81524 -25.42294 -23.62917 -22.08690 -21.62618 -19.03806 -18.05029 -16.39914 -16.25273 -15.86653 -15.66369 -14.63637 -14.51376 -14.32626 -13.71602 -13.65267 -13.43965 -13.33453 -12.55925 -12.19692 -12.12054 -11.84312 -11.63423 -11.48113 -11.41930 -11.00766 -10.85736 -10.81375 -10.76994 -10.63813 -10.40966 -10.22878 -10.17555 -9.80503 -9.68993 -9.55489 -9.02419 -8.89904 -8.22510 -7.32571 -5.86145 -3.83315 3.41927 3.45920 3.49495 3.75602 4.57352 4.65152 4.90550 4.94968 5.12214 5.20407 5.24173 5.47809 5.49624 5.50736 5.54229 5.67635 5.72711 5.79590 5.84277 5.94303 6.01408 6.09166 6.13929 6.20774 6.26238 6.31515 6.39057 6.41885 6.49897 6.57247 6.66389 6.78974 6.87638 7.01253 7.14173 7.22806 7.62779 7.73667 8.03157 8.08871 8.18063 8.63469 9.24927 9.78484 11.25984 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024509 B = 0.005712 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.167331 B = 4900.776559 C = 5387.178609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.072 3.928 4 C -0.058 4.058 5 C -0.138 4.138 6 C -0.103 4.103 7 C 0.060 3.940 8 N -0.512 5.512 9 C 0.089 3.911 10 H 0.008 0.992 11 C -0.131 4.131 12 C 0.024 3.976 13 C -0.485 4.485 14 H 0.067 0.933 15 C 0.049 3.951 16 N -0.905 5.905 17 Si 0.888 3.112 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.049 3.951 22 C -0.096 4.096 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.019 0.981 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.031 0.969 38 H 0.013 0.987 39 H 0.022 0.978 40 H 0.257 0.743 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 -10.656 4.689 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.004 4.004 4 C -0.059 4.059 5 C -0.195 4.195 6 C -0.141 4.141 7 C -0.068 4.068 8 N -0.237 5.237 9 C -0.019 4.019 10 H 0.026 0.974 11 C -0.188 4.188 12 C -0.013 4.013 13 C -0.523 4.523 14 H 0.085 0.915 15 C -0.150 4.150 16 N -0.546 5.546 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.079 4.079 22 C -0.134 4.134 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.037 0.963 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.561 -10.410 4.307 16.873 hybrid contribution -0.329 0.537 0.018 0.630 sum -12.890 -9.873 4.325 16.803 Atomic orbital electron populations 1.22693 0.81763 1.02318 0.99727 1.87874 1.18946 1.28399 1.95342 1.22644 0.93848 0.84092 0.99824 1.20639 0.91814 0.96886 0.96521 1.21864 1.01298 1.00093 0.96247 1.21592 0.96203 0.94480 1.01802 1.22085 0.94046 1.00767 0.89882 1.61860 1.11686 1.13058 1.37105 1.21725 0.85698 0.99552 0.94917 0.97393 1.21758 1.00200 0.98097 0.98755 1.19278 0.96141 0.88606 0.97302 1.21161 1.17822 0.96034 1.17297 0.91495 1.25028 0.95365 0.98174 0.96398 1.69957 1.29128 1.14877 1.40670 0.86723 0.79678 0.79303 0.82611 1.20483 1.21788 1.20519 1.22175 0.94584 0.91292 0.99885 1.21515 0.95261 0.99797 0.96852 0.94286 0.89986 0.94440 0.93668 0.93267 0.93363 0.92380 0.92352 0.90860 0.92250 0.88335 0.96301 0.90953 0.93352 0.95002 0.96868 0.96006 0.93347 0.95958 0.91095 0.91723 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.84 9.42 -35.23 -0.33 -5.17 16 3 C 0.07 0.90 4.81 37.16 0.18 1.08 16 4 C -0.06 -0.81 0.60 -154.38 -0.09 -0.90 16 5 C -0.14 -1.82 7.75 37.16 0.29 -1.53 16 6 C -0.10 -1.60 4.88 -26.65 -0.13 -1.73 16 7 C 0.06 1.11 4.79 -3.79 -0.02 1.09 16 8 N -0.51 -9.86 3.85 -226.63 -0.87 -10.73 16 9 C 0.09 1.85 2.34 -67.71 -0.16 1.69 16 10 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 11 C -0.13 -2.53 8.82 37.16 0.33 -2.20 16 12 C 0.02 0.60 4.19 -27.89 -0.12 0.48 16 13 C -0.48 -13.22 7.63 -34.44 -0.26 -13.48 16 14 H 0.07 1.83 6.86 -52.49 -0.36 1.47 16 15 C 0.05 1.40 5.46 -17.82 -0.10 1.31 16 16 N -0.91 -27.07 13.29 55.43 0.74 -26.34 16 17 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.05 0.79 5.01 -3.83 -0.02 0.78 16 22 C -0.10 -1.42 4.71 -26.65 -0.13 -1.54 16 23 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.75 7.68 -51.93 -0.40 0.36 16 30 H 0.06 0.82 4.92 -51.93 -0.26 0.57 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.13 5.75 -51.93 -0.30 1.84 16 34 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 35 H 0.07 1.53 6.91 -51.92 -0.36 1.17 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.53 6.33 -51.93 -0.33 0.20 16 38 H 0.01 0.35 6.37 -51.93 -0.33 0.02 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.02 0.36 6.51 -51.93 -0.34 0.02 16 42 H 0.07 1.14 6.07 -51.93 -0.32 0.82 16 43 H 0.06 0.91 7.77 -51.93 -0.40 0.50 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -29.33 327.10 -7.61 -36.94 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.93 Total: -2.98 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 0.89 Total: -13.57 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.14 Total: -37.07 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.33 Total: -5.17 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.33 -7.61 -36.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411456453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.120 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds