Wall clock time and date at job start Sun Mar 29 2020 23:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00107 * 2 1 4 4 C 1.52999 * 109.47046 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.52428 * 300.12298 * 4 3 2 6 6 C 1.53121 * 109.52219 * 179.97438 * 4 3 2 7 7 C 1.53033 * 109.31272 * 182.35674 * 6 4 3 8 8 N 1.46929 * 109.47790 * 59.16034 * 7 6 4 9 9 C 1.46902 * 110.98605 * 174.18153 * 8 7 6 10 10 H 1.08998 * 109.47129 * 66.30421 * 9 8 7 11 11 C 1.53004 * 109.47025 * 186.30028 * 9 8 7 12 12 C 1.52997 * 109.46949 * 306.29890 * 9 8 7 13 13 C 1.50696 * 109.47224 * 302.83261 * 12 9 8 14 14 H 1.07995 * 120.00646 * 5.12526 * 13 12 9 15 15 C 1.37886 * 119.99749 * 185.12503 * 13 12 9 16 16 N 1.31508 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99931 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46955 * 59.99860 * 17 15 13 19 19 H 1.48493 * 109.47178 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47111 * 300.00354 * 17 15 13 21 21 C 1.46850 * 111.21789 * 298.28418 * 8 7 6 22 22 C 1.53035 * 109.52651 * 61.74743 * 21 8 7 23 23 H 1.08999 * 109.46732 * 60.00713 * 1 2 3 24 24 H 1.09004 * 109.47124 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47473 * 300.00020 * 1 2 3 26 26 H 1.09000 * 109.47256 * 59.99655 * 3 2 1 27 27 H 1.09002 * 109.46901 * 300.00022 * 3 2 1 28 28 H 1.09000 * 109.47285 * 299.87504 * 5 4 3 29 29 H 1.09004 * 109.46781 * 59.87380 * 5 4 3 30 30 H 1.08999 * 109.46972 * 179.87501 * 5 4 3 31 31 H 1.09000 * 109.50125 * 302.32035 * 6 4 3 32 32 H 1.08997 * 109.50453 * 62.39575 * 6 4 3 33 33 H 1.09002 * 109.46380 * 179.21385 * 7 6 4 34 34 H 1.08992 * 109.46466 * 299.18244 * 7 6 4 35 35 H 1.09007 * 109.46940 * 60.00251 * 11 9 8 36 36 H 1.08995 * 109.47299 * 179.97438 * 11 9 8 37 37 H 1.09001 * 109.47299 * 299.99944 * 11 9 8 38 38 H 1.08997 * 109.47185 * 62.83563 * 12 9 8 39 39 H 1.09003 * 109.47109 * 182.83110 * 12 9 8 40 40 H 0.97001 * 120.00196 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46254 * 301.72314 * 21 8 7 42 42 H 1.09000 * 109.45205 * 181.75491 * 21 8 7 43 43 H 1.08997 * 109.50655 * 180.88216 * 22 21 8 44 44 H 1.08997 * 109.53735 * 60.77599 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 3.9875 0.4230 1.2482 6 6 4.1595 2.5828 0.0000 7 6 5.6835 2.4568 -0.0587 8 7 6.0683 1.7281 -1.2751 9 6 7.5283 1.7074 -1.4364 10 1 7.9742 1.1192 -0.6344 11 6 7.8835 1.0809 -2.7863 12 6 8.0679 3.1380 -1.3803 13 6 7.3997 3.9690 -2.4452 14 1 6.6055 3.5452 -3.0419 15 6 7.8024 5.2705 -2.6579 16 7 8.7698 5.7864 -1.9318 17 14 6.9737 6.3008 -3.9774 18 1 5.5244 6.4183 -3.6761 19 1 7.5844 7.6540 -4.0050 20 1 7.1531 5.6490 -5.2997 21 6 5.5196 0.3659 -1.2747 22 6 3.9908 0.4304 -1.2518 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.6678 0.9631 2.1394 29 1 3.5427 -0.5722 1.2474 30 1 5.0740 0.3354 1.2467 31 1 3.8065 3.1384 -0.8688 32 1 3.8728 3.1097 0.9100 33 1 6.1299 3.4511 -0.0734 34 1 6.0370 1.9131 0.8173 35 1 7.4377 1.6692 -3.5885 36 1 8.9668 1.0660 -2.9062 37 1 7.4992 0.0617 -2.8263 38 1 7.8589 3.5670 -0.4003 39 1 9.1445 3.1272 -1.5501 40 1 9.0534 6.7019 -2.0816 41 1 5.8739 -0.1680 -0.3930 42 1 5.8476 -0.1578 -2.1725 43 1 3.5841 -0.5808 -1.2356 44 1 3.6346 0.9518 -2.1402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411456453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:06 Heat of formation + Delta-G solvation = -74.569853 kcal Electronic energy + Delta-G solvation = -20550.524357 eV Core-core repulsion = 17694.646321 eV Total energy + Delta-G solvation = -2855.878036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89989 -38.75855 -36.81858 -34.59994 -32.28112 -31.89374 -28.85989 -28.30536 -28.13213 -26.39959 -25.54729 -23.50174 -22.96672 -20.76127 -19.32097 -18.26126 -17.21815 -17.15553 -16.68741 -16.46398 -15.86498 -15.76039 -15.20545 -14.93426 -14.81485 -14.55804 -14.12283 -13.75169 -13.53132 -13.06644 -12.91179 -12.81258 -12.75196 -12.70163 -12.50741 -12.30408 -12.24357 -12.15855 -11.95595 -11.85951 -11.47578 -11.33640 -11.01716 -10.92163 -10.74270 -10.51160 -10.41059 -8.85114 -8.05664 -6.08764 1.43845 1.45681 1.53168 2.50186 2.88601 3.15158 3.31448 3.80515 3.85091 4.00099 4.31377 4.34771 4.37101 4.42200 4.49664 4.52591 4.58014 4.63124 4.65033 4.69375 4.73042 4.81308 4.85025 4.89037 4.90873 5.06357 5.10391 5.16557 5.20556 5.25405 5.30258 5.34823 5.42451 5.48455 5.57186 5.61304 5.72930 5.93324 6.29922 6.35677 6.53189 6.63054 7.05808 7.56740 9.06746 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024509 B = 0.005712 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.167331 B = 4900.776559 C = 5387.178609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.077 3.923 4 C -0.056 4.056 5 C -0.131 4.131 6 C -0.096 4.096 7 C 0.063 3.937 8 N -0.526 5.526 9 C 0.094 3.906 10 H 0.015 0.985 11 C -0.123 4.123 12 C 0.030 3.970 13 C -0.481 4.481 14 H 0.065 0.935 15 C -0.006 4.006 16 N -0.943 5.943 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.271 1.271 21 C 0.051 3.949 22 C -0.090 4.090 23 H 0.044 0.956 24 H 0.096 0.904 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.062 0.938 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.257 0.743 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.676 -11.918 4.459 19.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C 0.001 3.999 4 C -0.056 4.056 5 C -0.188 4.188 6 C -0.134 4.134 7 C -0.064 4.064 8 N -0.251 5.251 9 C -0.014 4.014 10 H 0.033 0.967 11 C -0.180 4.180 12 C -0.007 4.007 13 C -0.520 4.520 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.585 5.585 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.197 1.197 21 C -0.077 4.077 22 C -0.128 4.128 23 H 0.062 0.938 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.673 -11.690 4.072 19.198 hybrid contribution 0.313 0.886 0.136 0.950 sum -14.360 -10.804 4.208 18.457 Atomic orbital electron populations 1.22887 0.80017 1.03615 1.00513 1.87831 1.20844 1.28157 1.95494 1.22509 0.92521 0.84470 1.00405 1.20570 0.93107 0.95387 0.96510 1.21791 1.00462 1.00376 0.96201 1.21510 0.93973 0.95962 1.01964 1.21966 0.95950 0.98550 0.89971 1.61821 1.10392 1.15215 1.37686 1.21527 0.87069 0.96591 0.96198 0.96748 1.21669 1.00213 0.99342 0.96825 1.19131 0.94355 0.91523 0.95655 1.21361 1.17271 0.96233 1.17110 0.91637 1.25828 0.96062 0.99591 0.98637 1.70093 1.30773 1.15182 1.42501 0.85694 0.78798 0.77561 0.80091 1.19735 1.21677 1.19655 1.22228 0.95616 0.89401 1.00411 1.21458 0.93885 1.00511 0.96898 0.93754 0.88521 0.93390 0.92493 0.93343 0.92398 0.91858 0.93509 0.92260 0.90670 0.92393 0.95657 0.92902 0.93354 0.91888 0.99034 0.98963 0.93464 0.95261 0.90577 0.90441 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.94 9.42 -148.98 -1.40 -10.35 16 3 C 0.08 1.72 4.81 71.98 0.35 2.07 16 4 C -0.06 -1.42 0.60 -52.10 -0.03 -1.46 16 5 C -0.13 -3.15 7.75 71.98 0.56 -2.59 16 6 C -0.10 -2.90 4.88 30.65 0.15 -2.75 16 7 C 0.06 2.35 4.79 86.31 0.41 2.77 16 8 N -0.53 -20.03 3.85 -870.91 -3.35 -23.38 16 9 C 0.09 3.94 2.34 44.92 0.11 4.05 16 10 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 11 C -0.12 -4.66 8.82 71.98 0.63 -4.03 16 12 C 0.03 1.60 4.19 29.85 0.13 1.72 16 13 C -0.48 -26.77 7.63 25.60 0.20 -26.58 16 14 H 0.07 3.62 6.86 -2.91 -0.02 3.60 16 15 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 16 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 17 Si 0.95 45.38 29.54 68.60 2.03 47.40 16 18 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 21 C 0.05 1.57 5.01 86.32 0.43 2.00 16 22 C -0.09 -2.45 4.71 30.65 0.14 -2.31 16 23 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.46 7.68 -2.38 -0.02 1.45 16 30 H 0.05 1.22 4.92 -2.39 -0.01 1.21 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.61 5.75 -2.39 -0.01 2.60 16 34 H 0.03 0.90 6.52 -2.39 -0.02 0.88 16 35 H 0.05 2.20 6.91 -2.38 -0.02 2.18 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.98 6.33 -2.39 -0.02 1.96 16 38 H -0.01 -0.48 6.37 -2.39 -0.02 -0.49 16 39 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 40 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 41 H 0.03 0.88 6.51 -2.39 -0.02 0.86 16 42 H 0.08 2.25 6.07 -2.39 -0.01 2.24 16 43 H 0.08 1.95 7.77 -2.39 -0.02 1.93 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -63.23 327.10 3.28 -59.95 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.94 Total: 9.26 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 4.78 Total: -25.32 kcal Atomic # 7 Polarization: -77.88 SS G_CDS: -3.07 Total: -80.94 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.40 Total: -10.35 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -63.23 3.28 -59.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411456453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.620 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds