Wall clock time and date at job start Sun Mar 29 2020 23:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 H 1.07999 * 120.00313 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99880 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00054 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99981 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47091 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46997 * 120.00139 * 9 7 5 12 12 H 1.48498 * 109.47334 * 240.00730 * 9 7 5 13 13 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 14 14 N 1.46898 * 109.47092 * 295.00148 * 13 2 1 15 15 C 1.46910 * 111.00101 * 179.97438 * 14 13 2 16 16 H 1.09003 * 109.47088 * 34.99378 * 15 14 13 17 17 C 1.53007 * 109.46843 * 275.00235 * 15 14 13 18 18 O 1.42901 * 109.46960 * 294.99739 * 17 15 14 19 19 C 1.52996 * 109.47318 * 155.00244 * 15 14 13 20 20 C 1.53004 * 109.46848 * 294.99804 * 19 15 14 21 21 C 1.53776 * 113.61485 * 272.50083 * 20 19 15 22 22 C 1.53787 * 87.08200 * 220.01969 * 21 20 19 23 23 C 1.53773 * 113.61382 * 175.00007 * 20 19 15 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 28 28 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 29 29 H 0.97003 * 120.00316 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46906 * 55.00224 * 13 2 1 31 31 H 1.09006 * 109.47717 * 174.99599 * 13 2 1 32 32 H 1.00902 * 111.00133 * 56.04865 * 14 13 2 33 33 H 1.09001 * 109.47331 * 54.99514 * 17 15 14 34 34 H 1.08996 * 109.47045 * 174.99937 * 17 15 14 35 35 H 0.96693 * 113.99923 * 180.02562 * 18 17 15 36 36 H 1.08999 * 109.46893 * 54.99628 * 19 15 14 37 37 H 1.08998 * 109.47182 * 175.00406 * 19 15 14 38 38 H 1.09010 * 112.84921 * 43.80352 * 20 19 15 39 39 H 1.09002 * 113.61282 * 334.56501 * 21 20 19 40 40 H 1.08996 * 113.61762 * 105.47222 * 21 20 19 41 41 H 1.09004 * 113.61110 * 270.88458 * 22 21 20 42 42 H 1.08991 * 113.61558 * 139.97799 * 22 21 20 43 43 H 1.09009 * 113.61716 * 254.52937 * 23 20 19 44 44 H 1.08998 * 113.61555 * 25.34726 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4015 -3.7284 8 7 2.6764 -1.5185 -3.8513 9 14 1.4996 0.5636 -5.2496 10 1 0.7430 1.7752 -4.8433 11 1 2.7179 0.9685 -5.9959 12 1 0.6457 -0.2852 -6.1189 13 6 2.0400 -0.7212 1.2491 14 7 1.6514 0.0374 2.4455 15 6 2.1249 -0.6272 3.6672 16 1 3.0884 -1.0989 3.4741 17 6 1.1122 -1.6920 4.0936 18 8 -0.1170 -1.0613 4.4586 19 6 2.2780 0.4072 4.7840 20 6 3.3799 1.4011 4.4109 21 6 4.7867 0.9500 4.8377 22 6 5.0518 2.4136 5.2285 23 6 3.5319 2.5571 5.4134 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.1264 -0.7994 -1.2057 28 1 1.6055 -1.7197 -1.2953 29 1 2.9243 -1.8410 -4.7319 30 1 1.6055 -1.7198 1.2950 31 1 3.1264 -0.7995 1.2055 32 1 0.6529 0.1792 2.4753 33 1 0.9364 -2.3786 3.2655 34 1 1.5042 -2.2450 4.9472 35 1 -0.8066 -1.6775 4.7407 36 1 1.3369 0.9409 4.9163 37 1 2.5434 -0.0975 5.7129 38 1 3.3210 1.7283 3.3727 39 1 4.7870 0.2648 5.6855 40 1 5.4032 0.6007 4.0096 41 1 5.4515 3.0174 4.4138 42 1 5.6166 2.5228 6.1542 43 1 3.1355 3.5053 5.0500 44 1 3.1879 2.3119 6.4182 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602637607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:13:28 Heat of formation + Delta-G solvation = -63.031470 kcal Electronic energy + Delta-G solvation = -19517.696569 eV Core-core repulsion = 16662.318875 eV Total energy + Delta-G solvation = -2855.377694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.20339 -37.72822 -36.11641 -34.08225 -32.22252 -29.99478 -27.37174 -26.68749 -25.54558 -25.10631 -23.18087 -22.21009 -20.40477 -19.23884 -18.88518 -17.53313 -16.36041 -15.59103 -15.44848 -15.26013 -14.51149 -14.30909 -14.19418 -13.71964 -13.59239 -12.74260 -12.50613 -12.41506 -12.32834 -11.97416 -11.80912 -11.70475 -11.38840 -11.23776 -10.95070 -10.83156 -10.73884 -10.43088 -10.28967 -10.21845 -10.13275 -9.96116 -9.85635 -9.66631 -9.09633 -8.90881 -8.30708 -7.98087 -5.95328 -3.96061 3.33816 3.41366 3.45806 4.12694 4.48971 4.60975 4.64829 4.76225 4.80626 4.91564 5.10648 5.19870 5.32127 5.40692 5.53053 5.60104 5.67988 5.72980 5.80054 5.85345 5.88877 5.91915 5.99548 6.05415 6.12813 6.14695 6.30601 6.32660 6.47667 6.54597 6.62799 6.73391 7.03087 7.16337 7.22966 7.44517 7.54451 7.73182 7.82596 7.90991 8.05475 8.49927 9.10681 9.67306 11.16293 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.004281 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.121064 B = 6538.623354 C = 7246.974844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.679 5.679 15 C 0.089 3.911 16 H 0.084 0.916 17 C 0.043 3.957 18 O -0.567 6.567 19 C -0.088 4.088 20 C -0.099 4.099 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.140 4.140 24 H 0.033 0.967 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.258 0.742 30 H 0.019 0.981 31 H 0.065 0.935 32 H 0.347 0.653 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.375 0.625 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 1.704 19.748 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.311 5.311 15 C -0.021 4.021 16 H 0.103 0.897 17 C -0.037 4.037 18 O -0.371 6.371 19 C -0.126 4.126 20 C -0.118 4.118 21 C -0.179 4.179 22 C -0.180 4.180 23 C -0.178 4.178 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.167 0.833 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.222 0.778 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.500 2.563 19.419 19.594 hybrid contribution -1.091 -1.036 -0.760 1.686 sum -0.591 1.527 18.659 18.731 Atomic orbital electron populations 1.21726 0.96711 1.00298 1.00283 1.21202 0.94844 1.00046 0.94129 0.91692 1.19114 0.96072 0.95323 0.90468 1.21291 1.34409 1.08225 0.90991 0.92511 1.25019 0.95365 0.95093 0.99089 1.69975 1.39253 1.21322 1.23213 0.86584 0.78250 0.80155 0.83312 1.19731 1.21101 1.21148 1.22172 0.99967 0.94467 0.89934 1.60613 1.20618 1.49249 1.00589 1.21686 0.96189 0.92761 0.91499 0.89747 1.23000 0.86159 0.96163 0.98371 1.86467 1.23750 1.37990 1.88928 1.21392 0.99079 0.96245 0.95881 1.22521 0.93503 0.95328 1.00421 1.23002 0.97899 0.96221 1.00789 1.22784 0.96646 0.97473 1.01118 1.22946 0.96078 0.99188 0.99571 0.94806 0.94228 0.92002 0.96722 0.96868 0.93201 0.96241 0.91692 0.83273 0.93680 0.93844 0.77840 0.91184 0.92747 0.87620 0.90813 0.91749 0.90340 0.92153 0.91852 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 2 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 3 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.11 4.94 -3.83 -0.02 1.09 16 14 N -0.68 -10.19 5.62 -106.72 -0.60 -10.79 16 15 C 0.09 1.12 2.41 -67.71 -0.16 0.96 16 16 H 0.08 1.07 7.80 -51.93 -0.41 0.67 16 17 C 0.04 0.47 6.72 37.16 0.25 0.72 16 18 O -0.57 -6.21 12.24 -35.23 -0.43 -6.64 16 19 C -0.09 -1.02 4.44 -26.73 -0.12 -1.14 16 20 C -0.10 -1.16 3.59 -89.81 -0.32 -1.49 16 21 C -0.14 -1.50 7.63 -25.92 -0.20 -1.70 16 22 C -0.14 -1.42 8.08 -25.91 -0.21 -1.63 16 23 C -0.14 -1.46 7.64 -25.92 -0.20 -1.66 16 24 H 0.03 0.56 6.68 -51.93 -0.35 0.22 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.02 0.34 7.36 -51.93 -0.38 -0.04 16 31 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 32 H 0.35 5.38 6.19 -39.29 -0.24 5.13 16 33 H 0.04 0.53 7.35 -51.93 -0.38 0.15 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.38 2.53 9.12 45.56 0.42 2.94 16 36 H 0.07 0.90 7.73 -51.93 -0.40 0.50 16 37 H 0.05 0.57 7.84 -51.93 -0.41 0.17 16 38 H 0.11 1.48 7.62 -51.92 -0.40 1.09 16 39 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -30.25 344.43 -8.99 -39.24 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -7.47 Total: 4.30 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -1.39 Total: -21.71 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.14 Total: -37.25 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.43 Total: -6.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.25 -8.99 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602637607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.796 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds