Wall clock time and date at job start Sun Mar 29 2020 23:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00026 * 2 1 4 4 H 1.48500 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46945 * 299.99240 * 3 2 1 6 6 H 1.48494 * 109.47634 * 59.99526 * 3 2 1 7 7 C 1.37874 * 119.99633 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00462 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46726 * 59.99458 * 9 7 2 11 11 O 1.45198 * 109.47336 * 179.97438 * 9 7 2 12 12 C 1.34221 * 116.99903 * 209.99870 * 11 9 7 13 13 O 1.20826 * 120.00367 * 359.97438 * 12 11 9 14 14 C 1.50706 * 120.00092 * 180.02562 * 12 11 9 15 15 C 1.52997 * 109.47238 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46947 * 179.97438 * 15 14 12 17 17 F 1.39903 * 109.47077 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.46681 * 299.99957 * 9 7 2 19 19 C 1.34511 * 125.79131 * 99.71475 * 18 9 7 20 20 C 1.41385 * 106.84245 * 179.88675 * 19 18 9 21 21 C 1.34514 * 106.83765 * 0.37205 * 20 19 18 22 22 O 1.34301 * 108.42535 * 359.77188 * 21 20 19 23 23 H 0.97000 * 119.99970 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46953 * 299.99668 * 14 12 11 25 25 H 1.09000 * 109.47318 * 59.99266 * 14 12 11 26 26 H 1.09001 * 109.46832 * 299.99686 * 15 14 12 27 27 H 1.09004 * 109.47261 * 59.99705 * 15 14 12 28 28 H 1.08992 * 109.47554 * 299.99696 * 16 15 14 29 29 H 1.08996 * 109.47261 * 60.00229 * 16 15 14 30 30 H 1.08002 * 126.57992 * 0.02722 * 19 18 9 31 31 H 1.07990 * 126.58111 * 180.16599 * 20 19 18 32 32 H 1.08002 * 125.78946 * 179.74580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5570 -0.8896 11 8 2.1945 -3.6028 0.0005 12 6 1.8032 -4.7390 -0.5974 13 8 0.7083 -4.8093 -1.1037 14 6 2.7290 -5.9275 -0.6364 15 6 2.0453 -7.0827 -1.3706 16 6 2.9855 -8.2890 -1.4107 17 9 2.3602 -9.3455 -2.0815 18 6 0.3841 -2.5787 1.2307 19 6 -0.9350 -2.3203 1.2817 20 6 -1.3400 -2.5195 2.6215 21 6 -0.2426 -2.8797 3.3109 22 8 0.7988 -2.9139 2.4635 23 1 -0.4850 0.8400 -0.0004 24 1 3.6459 -5.6568 -1.1598 25 1 2.9689 -6.2347 0.3816 26 1 1.1282 -7.3535 -0.8475 27 1 1.8058 -6.7752 -2.3886 28 1 3.9024 -8.0180 -1.9339 29 1 3.2254 -8.5967 -0.3929 30 1 -1.5644 -2.0205 0.4568 31 1 -2.3382 -2.4016 3.0164 32 1 -0.2051 -3.1031 4.3669 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345976310.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:18 Heat of formation + Delta-G solvation = -136.317499 kcal Electronic energy + Delta-G solvation = -18857.549267 eV Core-core repulsion = 15506.148495 eV Total energy + Delta-G solvation = -3351.400771 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 256.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.67727 -41.37485 -39.62937 -36.01537 -33.97522 -33.29397 -31.73710 -29.77596 -27.62404 -26.52501 -23.33529 -22.17295 -20.67753 -20.14969 -19.28020 -17.31827 -16.74846 -16.66289 -16.47788 -15.81257 -15.38192 -15.23650 -14.81470 -14.53792 -14.35223 -13.77926 -12.97871 -12.73655 -12.17799 -11.95966 -11.74585 -11.59960 -11.48954 -11.36701 -11.14985 -11.07035 -10.99697 -10.72545 -10.39099 -10.14169 -9.75496 -9.42129 -8.85216 -8.68052 -7.28676 -6.24481 -4.42586 2.83460 2.85926 3.18514 3.24500 3.28779 3.44328 3.91246 4.15864 4.23936 4.67033 4.67419 4.75616 4.93676 5.04371 5.23055 5.42519 5.55437 5.72799 5.85393 5.91585 6.04700 6.17642 6.34397 6.68705 6.95841 7.12067 7.20297 7.36049 7.66576 7.67261 7.82677 8.32145 8.47737 8.74791 9.24578 10.74401 Molecular weight = 256.09amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.005803 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.122691 B = 4823.921433 C = 5615.588585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.297 3.703 10 H 0.079 0.921 11 O -0.349 6.349 12 C 0.452 3.548 13 O -0.516 6.516 14 C -0.113 4.113 15 C -0.143 4.143 16 C 0.063 3.937 17 F -0.220 7.220 18 C 0.025 3.975 19 C -0.178 4.178 20 C -0.217 4.217 21 C -0.089 4.089 22 O -0.177 6.177 23 H 0.268 0.732 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -9.895 1.162 10.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.244 3.756 10 H 0.096 0.904 11 O -0.265 6.265 12 C 0.295 3.705 13 O -0.405 6.405 14 C -0.151 4.151 15 C -0.181 4.181 16 C 0.008 3.992 17 F -0.201 7.201 18 C -0.026 4.026 19 C -0.198 4.198 20 C -0.237 4.237 21 C -0.156 4.156 22 O -0.074 6.074 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.122 0.878 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.984 -9.834 1.077 10.665 hybrid contribution -0.201 1.198 0.240 1.238 sum 3.783 -8.636 1.317 9.520 Atomic orbital electron populations 1.70042 1.05937 1.27598 1.46618 1.24952 0.95137 0.99596 0.93991 0.86175 0.80002 0.81950 0.77823 1.19267 1.20529 1.20664 1.20933 0.94172 0.87565 1.54168 0.90370 1.19192 0.85730 0.81850 0.88834 0.90371 1.86542 1.48447 1.22081 1.69426 1.23371 0.86772 0.85095 0.75265 1.90630 1.22750 1.83399 1.43736 1.21185 0.98774 0.91318 1.03812 1.21980 0.99523 0.93375 1.03245 1.21981 0.95576 0.84348 0.97274 1.92764 1.84997 1.59404 1.82911 1.23543 0.94160 1.00304 0.84558 1.21222 0.94870 1.06802 0.96882 1.21696 0.98940 1.07903 0.95157 1.23608 0.86055 1.10308 0.95636 1.83987 1.36560 1.68684 1.18154 0.92185 0.87710 0.87824 0.89826 0.89752 0.90553 0.90608 0.84092 0.85121 0.79855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.86 10.92 55.43 0.61 -23.25 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 3 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.52 8.89 -34.44 -0.31 -14.83 16 8 H 0.08 2.10 7.81 -52.48 -0.41 1.69 16 9 C 0.30 7.79 2.42 -29.03 -0.07 7.72 16 10 H 0.08 2.20 7.15 -51.93 -0.37 1.82 16 11 O -0.35 -8.02 9.85 -41.24 -0.41 -8.43 16 12 C 0.45 8.89 7.92 36.01 0.29 9.17 16 13 O -0.52 -11.61 15.20 -18.75 -0.29 -11.90 16 14 C -0.11 -1.45 5.81 -27.88 -0.16 -1.61 16 15 C -0.14 -1.71 4.96 -26.73 -0.13 -1.85 16 16 C 0.06 0.58 7.55 37.16 0.28 0.87 16 17 F -0.22 -2.68 17.36 2.25 0.04 -2.64 16 18 C 0.03 0.65 5.54 -35.62 -0.20 0.46 16 19 C -0.18 -4.43 9.16 -39.70 -0.36 -4.80 16 20 C -0.22 -4.64 10.91 -39.70 -0.43 -5.08 16 21 C -0.09 -1.81 12.09 29.42 0.36 -1.46 16 22 O -0.18 -4.32 10.65 4.50 0.05 -4.27 16 23 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 27 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.14 3.59 7.85 -52.49 -0.41 3.18 16 31 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 32 H 0.18 2.82 8.06 -52.49 -0.42 2.40 16 LS Contribution 291.39 15.07 4.39 4.39 Total: -1.00 -31.56 291.39 -5.17 -36.73 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.71 Total: 3.33 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -0.84 Total: -9.64 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.61 Total: -23.25 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.64 Total: -24.60 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.56 -5.17 -36.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345976310.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.583 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds