Wall clock time and date at job start Sun Mar 29 2020 23:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47441 * 304.99257 * 5 3 2 7 7 O 1.45206 * 109.47085 * 184.99382 * 5 3 2 8 8 C 1.34235 * 116.99893 * 149.99421 * 7 5 3 9 9 O 1.20819 * 119.99961 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99453 * 180.02562 * 8 7 5 11 11 C 1.53002 * 109.46660 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47187 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99676 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99745 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00011 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46996 * 90.00473 * 16 14 12 18 18 H 1.48505 * 109.47129 * 209.99995 * 16 14 12 19 19 H 1.48501 * 109.47331 * 330.00282 * 16 14 12 20 20 C 1.52995 * 109.47448 * 64.99708 * 5 3 2 21 21 C 1.52993 * 117.50149 * 248.74787 * 20 5 3 22 22 C 1.52998 * 117.50262 * 180.08325 * 20 5 3 23 23 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 26 26 H 1.08997 * 109.47401 * 300.00275 * 10 8 7 27 27 H 1.09001 * 109.47243 * 60.01188 * 10 8 7 28 28 H 1.09007 * 109.47092 * 300.00081 * 11 10 8 29 29 H 1.09006 * 109.47340 * 60.00062 * 11 10 8 30 30 H 0.96995 * 119.99910 * 180.02562 * 15 14 12 31 31 H 1.09003 * 115.54806 * 34.41453 * 20 5 3 32 32 H 1.09005 * 117.49919 * 359.97438 * 21 20 5 33 33 H 1.09000 * 117.50488 * 145.02137 * 21 20 5 34 34 H 1.08995 * 117.50259 * 214.98037 * 22 20 5 35 35 H 1.09006 * 117.49839 * 359.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9604 0.7052 0.8410 7 8 3.9784 2.6621 0.1187 8 6 5.1474 2.8998 0.7341 9 8 5.8048 1.9792 1.1586 10 6 5.6398 4.3149 0.8955 11 6 6.9852 4.3067 1.6240 12 6 7.4774 5.7218 1.7860 13 1 6.8892 6.5447 1.4076 14 6 8.6786 5.9659 2.4172 15 7 9.1079 7.2009 2.5590 16 14 9.6956 4.5426 3.0723 17 1 10.6295 4.0746 2.0169 18 1 10.4716 4.9922 4.2560 19 1 8.7943 3.4296 3.4648 20 6 4.1071 0.6929 -1.3082 21 6 4.8765 -0.6271 -1.2292 22 6 5.6247 0.6803 -1.5016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 5.7616 4.7715 -0.0867 27 1 4.9159 4.8876 1.4753 28 1 6.8638 3.8500 2.6062 29 1 7.7090 3.7341 1.0440 30 1 9.9531 7.3726 3.0028 31 1 3.4888 0.8631 -2.1896 32 1 4.9979 -1.0808 -0.2455 33 1 4.7649 -1.3252 -2.0588 34 1 6.0049 0.8417 -2.5102 35 1 6.2380 1.0869 -0.6974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812616632.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:03 Heat of formation + Delta-G solvation = -148.070724 kcal Electronic energy + Delta-G solvation = -19080.857251 eV Core-core repulsion = 15852.407127 eV Total energy + Delta-G solvation = -3228.450124 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 256.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10132 -40.07318 -37.48395 -36.74511 -35.86213 -33.66512 -31.50222 -29.98906 -27.54715 -26.25736 -22.61541 -22.24156 -22.09604 -20.64512 -19.94327 -18.22583 -17.49924 -17.22937 -16.84075 -16.66662 -16.08829 -15.39217 -14.89077 -14.34949 -14.14248 -13.61707 -13.34696 -13.14982 -12.87836 -12.57169 -12.35182 -12.19887 -11.62391 -11.51775 -11.08490 -11.05757 -10.98322 -10.76718 -10.51964 -10.35900 -10.22113 -10.17992 -9.98743 -9.75413 -9.28345 -8.57534 -6.08667 -4.08902 1.88496 1.90091 2.51143 3.05856 3.32498 3.39788 3.47844 3.75090 4.24541 4.44244 4.46371 4.64731 4.75072 4.81700 4.86610 4.89785 5.17697 5.22482 5.25823 5.31566 5.52386 5.72430 5.91128 5.95427 5.96993 6.02131 6.10684 6.36862 6.64167 7.19003 7.26951 7.46238 7.67760 8.04142 8.44865 8.93846 9.52616 11.03953 Molecular weight = 256.12amu Principal moments of inertia in cm(-1) A = 0.032198 B = 0.004640 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.407494 B = 6032.859461 C = 6494.552633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.351 6.351 3 C 0.470 3.530 4 O -0.482 6.482 5 C 0.127 3.873 6 H 0.121 0.879 7 O -0.333 6.333 8 C 0.463 3.537 9 O -0.505 6.505 10 C -0.094 4.094 11 C -0.001 4.001 12 C -0.528 4.528 13 H 0.076 0.924 14 C 0.071 3.929 15 N -0.900 5.900 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.262 1.262 20 C -0.177 4.177 21 C -0.156 4.156 22 C -0.171 4.171 23 H 0.064 0.936 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.026 0.974 29 H 0.022 0.978 30 H 0.265 0.735 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.974 -16.900 -7.532 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.311 3.689 4 O -0.367 6.367 5 C 0.070 3.930 6 H 0.138 0.862 7 O -0.251 6.251 8 C 0.307 3.693 9 O -0.393 6.393 10 C -0.131 4.131 11 C -0.038 4.038 12 C -0.566 4.566 13 H 0.094 0.906 14 C -0.131 4.131 15 N -0.538 5.538 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.186 1.186 20 C -0.196 4.196 21 C -0.193 4.193 22 C -0.208 4.208 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.886 -16.781 -7.329 22.981 hybrid contribution 0.320 -0.649 0.354 0.805 sum -13.566 -17.430 -6.975 23.162 Atomic orbital electron populations 1.23331 0.75727 1.03891 1.02841 1.86484 1.23663 1.32402 1.84235 1.23043 0.90775 0.81884 0.73236 1.90716 1.66518 1.36149 1.43283 1.21277 0.87662 0.83864 1.00170 0.86182 1.86714 1.39865 1.26533 1.71952 1.24968 0.77327 0.94474 0.72488 1.90587 1.55882 1.46516 1.46267 1.21606 1.00713 0.86359 1.04446 1.19499 0.90110 0.98419 0.95819 1.21019 1.05934 0.91061 1.38564 0.90597 1.24952 0.97328 0.95557 0.95231 1.69901 1.21468 1.19111 1.43306 0.86804 0.80632 0.83269 0.78876 1.20136 1.21314 1.18609 1.22330 0.96714 1.03382 0.97134 1.23011 1.02350 0.90175 1.03778 1.23298 0.92283 1.00818 1.04415 0.91674 0.87758 0.91666 0.87966 0.87996 0.95549 0.95930 0.92568 0.86718 0.88071 0.88081 0.88118 0.86673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.85 10.56 -39.25 -0.41 -4.26 16 3 C 0.47 6.42 7.27 36.01 0.26 6.68 16 4 O -0.48 -7.91 16.26 -25.39 -0.41 -8.32 16 5 C 0.13 1.77 2.78 -27.89 -0.08 1.69 16 6 H 0.12 1.64 6.91 -51.93 -0.36 1.28 16 7 O -0.33 -5.57 9.40 -45.91 -0.43 -6.00 16 8 C 0.46 8.42 7.18 36.01 0.26 8.68 16 9 O -0.51 -9.89 13.03 -18.74 -0.24 -10.14 16 10 C -0.09 -1.82 5.75 -27.88 -0.16 -1.98 16 11 C 0.00 -0.02 3.33 -27.88 -0.09 -0.12 16 12 C -0.53 -14.75 9.66 -34.44 -0.33 -15.08 16 13 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 16 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 20 C -0.18 -2.09 5.38 -90.63 -0.49 -2.58 16 21 C -0.16 -1.57 10.18 -26.70 -0.27 -1.84 16 22 C -0.17 -2.09 9.80 -26.69 -0.26 -2.36 16 23 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 26 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 27 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 28 H 0.03 0.65 7.16 -51.92 -0.37 0.28 16 29 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.11 1.24 8.11 -51.93 -0.42 0.81 16 32 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.73 5.37 -51.93 -0.28 1.45 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -32.77 305.18 -5.78 -38.54 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.78 Total: -1.34 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.19 Total: -3.59 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.50 Total: -28.72 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.77 -5.78 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616632.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.526 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds