Wall clock time and date at job start Sun Mar 29 2020 23:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.47441 * 304.99257 * 5 3 2 7 7 O 1.45206 * 109.47085 * 184.99382 * 5 3 2 8 8 C 1.34235 * 116.99893 * 149.99421 * 7 5 3 9 9 O 1.20819 * 119.99961 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99453 * 180.02562 * 8 7 5 11 11 C 1.53002 * 109.46660 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47187 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99676 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99917 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99745 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00011 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46996 * 90.00473 * 16 14 12 18 18 H 1.48505 * 109.47129 * 209.99995 * 16 14 12 19 19 H 1.48501 * 109.47331 * 330.00282 * 16 14 12 20 20 C 1.52995 * 109.47448 * 64.99708 * 5 3 2 21 21 C 1.52993 * 117.50149 * 248.74787 * 20 5 3 22 22 C 1.52998 * 117.50262 * 180.08325 * 20 5 3 23 23 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 26 26 H 1.08997 * 109.47401 * 300.00275 * 10 8 7 27 27 H 1.09001 * 109.47243 * 60.01188 * 10 8 7 28 28 H 1.09007 * 109.47092 * 300.00081 * 11 10 8 29 29 H 1.09006 * 109.47340 * 60.00062 * 11 10 8 30 30 H 0.96995 * 119.99910 * 180.02562 * 15 14 12 31 31 H 1.09003 * 115.54806 * 34.41453 * 20 5 3 32 32 H 1.09005 * 117.49919 * 359.97438 * 21 20 5 33 33 H 1.09000 * 117.50488 * 145.02137 * 21 20 5 34 34 H 1.08995 * 117.50259 * 214.98037 * 22 20 5 35 35 H 1.09006 * 117.49839 * 359.97438 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9604 0.7052 0.8410 7 8 3.9784 2.6621 0.1187 8 6 5.1474 2.8998 0.7341 9 8 5.8048 1.9792 1.1586 10 6 5.6398 4.3149 0.8955 11 6 6.9852 4.3067 1.6240 12 6 7.4774 5.7218 1.7860 13 1 6.8892 6.5447 1.4076 14 6 8.6786 5.9659 2.4172 15 7 9.1079 7.2009 2.5590 16 14 9.6956 4.5426 3.0723 17 1 10.6295 4.0746 2.0169 18 1 10.4716 4.9922 4.2560 19 1 8.7943 3.4296 3.4648 20 6 4.1071 0.6929 -1.3082 21 6 4.8765 -0.6271 -1.2292 22 6 5.6247 0.6803 -1.5016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 5.7616 4.7715 -0.0867 27 1 4.9159 4.8876 1.4753 28 1 6.8638 3.8500 2.6062 29 1 7.7090 3.7341 1.0440 30 1 9.9531 7.3726 3.0028 31 1 3.4888 0.8631 -2.1896 32 1 4.9979 -1.0808 -0.2455 33 1 4.7649 -1.3252 -2.0588 34 1 6.0049 0.8417 -2.5102 35 1 6.2380 1.0869 -0.6974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812616632.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:03 Heat of formation + Delta-G solvation = -167.218880 kcal Electronic energy + Delta-G solvation = -19081.687578 eV Core-core repulsion = 15852.407127 eV Total energy + Delta-G solvation = -3229.280451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 256.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27692 -41.26985 -38.59101 -37.75024 -37.08741 -35.64481 -33.46878 -31.07128 -28.66553 -27.77751 -24.01534 -23.38563 -23.05700 -21.88624 -21.40602 -19.61356 -18.87293 -18.62803 -18.03171 -17.93722 -17.27799 -16.70809 -16.25107 -15.80825 -15.52373 -14.88604 -14.68414 -14.51671 -14.27135 -13.93212 -13.60000 -13.38025 -12.98996 -12.94142 -12.46710 -12.29642 -12.02397 -11.98841 -11.92060 -11.87796 -11.78243 -11.59170 -11.44895 -11.29339 -11.17380 -10.78179 -8.31020 -6.35895 0.81084 0.83780 1.08728 1.36191 1.38273 1.51493 1.95184 2.35548 2.78803 3.04483 3.30640 3.48609 3.62152 3.80520 3.90597 4.05431 4.25336 4.26803 4.30336 4.32543 4.35509 4.68015 4.74474 4.78386 4.88741 5.02941 5.10500 5.16091 5.22415 5.28160 5.35700 5.57937 6.21411 6.44633 6.62446 6.73397 7.29206 8.84755 Molecular weight = 256.12amu Principal moments of inertia in cm(-1) A = 0.032198 B = 0.004640 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.407494 B = 6032.859461 C = 6494.552633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.345 6.345 3 C 0.478 3.522 4 O -0.516 6.516 5 C 0.119 3.881 6 H 0.122 0.878 7 O -0.339 6.339 8 C 0.474 3.526 9 O -0.520 6.520 10 C -0.091 4.091 11 C 0.005 3.995 12 C -0.534 4.534 13 H 0.048 0.952 14 C 0.014 3.986 15 N -0.944 5.944 16 Si 0.941 3.059 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.255 1.255 20 C -0.183 4.183 21 C -0.132 4.132 22 C -0.187 4.187 23 H 0.067 0.933 24 H 0.141 0.859 25 H 0.062 0.938 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.268 0.732 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.640 -19.573 -8.150 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.261 6.261 3 C 0.320 3.680 4 O -0.404 6.404 5 C 0.063 3.937 6 H 0.140 0.860 7 O -0.256 6.256 8 C 0.319 3.681 9 O -0.409 6.409 10 C -0.129 4.129 11 C -0.033 4.033 12 C -0.572 4.572 13 H 0.066 0.934 14 C -0.184 4.184 15 N -0.584 5.584 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.179 1.179 20 C -0.201 4.201 21 C -0.169 4.169 22 C -0.224 4.224 23 H 0.086 0.914 24 H 0.159 0.841 25 H 0.081 0.919 26 H 0.133 0.867 27 H 0.128 0.872 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.576 -19.484 -7.959 25.602 hybrid contribution 0.398 0.166 0.506 0.665 sum -14.178 -19.318 -7.454 25.095 Atomic orbital electron populations 1.23712 0.73608 1.06368 1.02901 1.86478 1.25605 1.30608 1.83422 1.22949 0.90512 0.82177 0.72362 1.90706 1.67146 1.37366 1.45182 1.21576 0.88286 0.82197 1.01614 0.86007 1.86645 1.38856 1.28752 1.71353 1.24404 0.77673 0.93567 0.72429 1.90582 1.56462 1.46803 1.47010 1.21380 0.98841 0.87874 1.04767 1.19321 0.92357 0.95547 0.96032 1.21335 1.05651 0.92465 1.37725 0.93369 1.25832 0.98778 0.98092 0.95708 1.70028 1.22314 1.21327 1.44725 0.85783 0.79120 0.79992 0.78574 1.19034 1.20649 1.17885 1.22368 0.96522 1.04909 0.96346 1.23148 0.99362 0.89478 1.04900 1.23259 0.92047 1.02884 1.04205 0.91436 0.84054 0.91898 0.86739 0.87216 0.96178 0.95919 0.92291 0.85509 0.87989 0.85227 0.86709 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.80 10.56 -51.38 -0.54 -7.34 16 3 C 0.48 12.41 7.27 71.24 0.52 12.93 16 4 O -0.52 -16.60 16.26 28.31 0.46 -16.14 16 5 C 0.12 3.18 2.78 29.85 0.08 3.26 16 6 H 0.12 3.19 6.91 -2.39 -0.02 3.18 16 7 O -0.34 -11.08 9.40 -45.12 -0.42 -11.51 16 8 C 0.47 16.96 7.18 71.24 0.51 17.47 16 9 O -0.52 -19.97 13.03 21.98 0.29 -19.69 16 10 C -0.09 -3.51 5.75 29.85 0.17 -3.33 16 11 C 0.00 0.24 3.33 29.85 0.10 0.34 16 12 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 13 H 0.05 2.92 7.99 -2.91 -0.02 2.89 16 14 C 0.01 0.80 5.47 84.66 0.46 1.26 16 15 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 16 Si 0.94 44.92 27.47 68.60 1.88 46.81 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.25 -11.79 6.54 99.48 0.65 -11.14 16 20 C -0.18 -3.95 5.38 -10.80 -0.06 -4.01 16 21 C -0.13 -2.27 10.18 30.62 0.31 -1.96 16 22 C -0.19 -4.25 9.80 30.62 0.30 -3.95 16 23 H 0.07 0.86 8.13 -2.39 -0.02 0.85 16 24 H 0.14 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 26 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 27 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 28 H 0.02 0.97 7.16 -2.38 -0.02 0.95 16 29 H 0.02 1.07 7.53 -2.38 -0.02 1.05 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.13 2.42 8.11 -2.39 -0.02 2.40 16 32 H 0.10 1.76 8.05 -2.38 -0.02 1.74 16 33 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.53 5.37 -2.38 -0.01 2.51 16 Total: -1.00 -70.59 305.18 6.84 -63.75 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 3.84 Total: -6.42 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.30 Total: -58.21 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -0.22 Total: -54.67 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.81 kcal Total: -70.59 6.84 -63.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812616632.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.472 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds