Wall clock time and date at job start Sun Mar 29 2020 23:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99971 * 2 1 4 4 H 1.48499 * 109.47157 * 269.99571 * 3 2 1 5 5 H 1.48504 * 109.47347 * 29.99999 * 3 2 1 6 6 H 1.48505 * 109.47041 * 149.99787 * 3 2 1 7 7 C 1.37878 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99607 * 158.03306 * 7 2 1 9 9 C 1.50692 * 120.00003 * 338.03144 * 7 2 1 10 10 C 1.52998 * 115.55187 * 324.57347 * 9 7 2 11 11 O 1.45194 * 109.47406 * 278.54831 * 10 9 7 12 12 C 1.34228 * 117.00292 * 176.10939 * 11 10 9 13 13 O 1.20826 * 119.99874 * 357.56453 * 12 11 10 14 14 C 1.50701 * 120.00210 * 177.28220 * 12 11 10 15 15 C 1.52997 * 112.99891 * 54.33017 * 14 12 11 16 16 O 1.42903 * 109.46897 * 297.98715 * 15 14 12 17 17 C 1.54035 * 113.81601 * 282.34033 * 14 12 11 18 18 O 1.44177 * 85.51811 * 223.19387 * 17 14 12 19 19 C 1.44181 * 93.33936 * 24.19554 * 18 17 14 20 20 C 1.53003 * 117.51669 * 110.27937 * 9 7 2 21 21 C 1.53003 * 60.00236 * 107.48263 * 20 9 7 22 22 H 0.97003 * 119.99824 * 5.11660 * 1 2 3 23 23 H 1.09005 * 109.46899 * 158.54562 * 10 9 7 24 24 H 1.08998 * 109.46833 * 38.55264 * 10 9 7 25 25 H 1.08997 * 109.47413 * 57.98591 * 15 14 12 26 26 H 1.09001 * 109.47030 * 177.99103 * 15 14 12 27 27 H 0.96705 * 114.00072 * 180.02562 * 16 15 14 28 28 H 1.08999 * 113.86480 * 337.34244 * 17 14 12 29 29 H 1.08996 * 113.86232 * 109.04908 * 17 14 12 30 30 H 1.08998 * 113.86412 * 221.65865 * 19 18 17 31 31 H 1.09003 * 113.86492 * 89.94917 * 19 18 17 32 32 H 1.09002 * 117.49739 * 214.96285 * 20 9 7 33 33 H 1.08993 * 117.49981 * 359.97438 * 20 9 7 34 34 H 1.09008 * 117.49581 * 252.51348 * 21 20 9 35 35 H 1.08995 * 117.52152 * 107.47983 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0257 -1.2281 -0.3493 9 6 1.3331 -2.4515 0.4893 10 6 0.3596 -2.2692 1.6554 11 8 1.1024 -2.2117 2.9016 12 6 0.3993 -1.9729 4.0198 13 8 -0.7906 -1.7735 3.9542 14 6 1.0927 -1.9599 5.3577 15 6 2.2819 -0.9984 5.4053 16 8 3.2653 -1.4097 4.4536 17 6 1.4016 -3.3635 5.9119 18 8 0.9400 -2.8428 7.1747 19 6 0.1329 -1.8217 6.5545 20 6 0.9983 -3.5237 -0.5496 21 6 2.1424 -3.7491 0.4409 22 1 -0.4850 0.8367 -0.0749 23 1 -0.3341 -3.1096 1.6843 24 1 -0.1981 -1.3423 1.5216 25 1 1.9438 0.0098 5.1658 26 1 2.7170 -1.0079 6.4046 27 1 4.0496 -0.8444 4.4290 28 1 0.7679 -4.1492 5.5007 29 1 2.4612 -3.6185 5.9010 30 1 0.1863 -0.8540 7.0532 31 1 -0.8882 -2.1368 6.3395 32 1 0.0845 -4.0993 -0.4022 33 1 1.2633 -3.3195 -1.5869 34 1 3.1604 -3.6932 0.0552 35 1 1.9815 -4.4727 1.2401 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118398564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:02 Heat of formation + Delta-G solvation = -133.680407 kcal Electronic energy + Delta-G solvation = -20091.044105 eV Core-core repulsion = 16863.217992 eV Total energy + Delta-G solvation = -3227.826113 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 256.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.42743 -40.58184 -38.54069 -37.47485 -36.81890 -34.29442 -32.35219 -28.58810 -27.76103 -27.39666 -26.51326 -23.99417 -22.95033 -21.12505 -20.32240 -18.83721 -18.69351 -18.30147 -17.61793 -17.45460 -17.04135 -16.65766 -16.41299 -15.78586 -15.45442 -15.02820 -14.70665 -14.19587 -13.81529 -13.72021 -13.55556 -13.03573 -12.85577 -12.79115 -12.53522 -12.34566 -12.20431 -12.12172 -11.68524 -11.63555 -11.22947 -11.02010 -10.93387 -10.76120 -10.66538 -10.04305 -8.20157 -6.19466 1.10838 1.37143 1.41090 1.52599 1.78147 2.34426 2.37976 2.78978 2.91801 3.33601 3.49829 3.78504 3.89923 4.05837 4.15860 4.22626 4.35308 4.39480 4.48332 4.53007 4.55253 4.68190 4.77800 4.80128 4.89472 4.92162 4.96677 5.15535 5.42865 5.51281 5.71745 5.81768 6.33084 6.74389 6.79495 6.95619 7.37120 8.83369 Molecular weight = 256.12amu Principal moments of inertia in cm(-1) A = 0.021188 B = 0.007742 C = 0.006887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.204129 B = 3615.835099 C = 4064.505558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.100 3.900 11 O -0.326 6.326 12 C 0.457 3.543 13 O -0.550 6.550 14 C -0.138 4.138 15 C 0.106 3.894 16 O -0.572 6.572 17 C 0.071 3.929 18 O -0.377 6.377 19 C 0.073 3.927 20 C -0.191 4.191 21 C -0.172 4.172 22 H 0.264 0.736 23 H 0.032 0.968 24 H 0.088 0.912 25 H 0.052 0.948 26 H 0.099 0.901 27 H 0.399 0.601 28 H 0.086 0.914 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 -2.301 12.431 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.175 4.175 3 Si 0.773 3.227 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.014 3.986 10 C 0.027 3.973 11 O -0.241 6.241 12 C 0.302 3.698 13 O -0.442 6.442 14 C -0.140 4.140 15 C 0.028 3.972 16 O -0.380 6.380 17 C -0.006 4.006 18 O -0.296 6.296 19 C -0.004 4.004 20 C -0.229 4.229 21 C -0.210 4.210 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.249 0.751 28 H 0.104 0.896 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.957 -2.653 12.575 13.447 hybrid contribution 0.107 1.318 -0.721 1.506 sum 4.064 -1.335 11.854 12.602 Atomic orbital electron populations 1.69977 1.07603 1.27820 1.48685 1.25704 0.95318 1.02445 0.94036 0.85703 0.79369 0.79073 0.78567 1.19837 1.21101 1.18477 1.20684 0.98615 0.91798 1.43115 0.92185 1.18913 0.97311 0.89532 0.92794 1.22779 0.93259 1.01892 0.79382 1.86594 1.42030 1.79588 1.15840 1.24088 0.85831 0.72106 0.87812 1.90594 1.18002 1.47393 1.88188 1.24266 0.98771 1.02133 0.88807 1.21764 0.86983 0.94201 0.94217 1.86604 1.32646 1.57345 1.61415 1.23971 1.03309 0.92217 0.81097 1.89680 1.64053 1.49801 1.26095 1.24099 0.94616 0.94781 0.86882 1.23016 0.98639 1.05111 0.96084 1.22783 0.95762 1.00883 1.01530 0.92661 0.94955 0.89469 0.92990 0.88359 0.75126 0.89576 0.85650 0.85053 0.88826 0.90442 0.90093 0.89615 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.03 11.13 21.45 0.24 -51.79 16 2 C 0.03 1.39 5.03 84.65 0.43 1.81 16 3 Si 0.95 42.74 29.60 68.60 2.03 44.77 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.51 -27.85 8.98 25.60 0.23 -27.62 16 8 H 0.06 3.26 7.91 -2.91 -0.02 3.24 16 9 C 0.02 0.76 1.99 -52.93 -0.11 0.66 16 10 C 0.10 5.14 5.19 71.98 0.37 5.52 16 11 O -0.33 -15.18 9.23 -46.67 -0.43 -15.61 16 12 C 0.46 18.70 6.99 71.24 0.50 19.20 16 13 O -0.55 -25.27 15.64 21.96 0.34 -24.93 16 14 C -0.14 -4.03 1.10 -52.23 -0.06 -4.09 16 15 C 0.11 2.62 6.32 71.98 0.46 3.08 16 16 O -0.57 -16.22 12.64 -136.59 -1.73 -17.95 16 17 C 0.07 1.77 8.33 72.27 0.60 2.37 16 18 O -0.38 -9.32 12.37 -148.98 -1.84 -11.16 16 19 C 0.07 1.75 8.12 72.27 0.59 2.33 16 20 C -0.19 -8.64 9.88 30.60 0.30 -8.34 16 21 C -0.17 -7.42 9.93 30.60 0.30 -7.11 16 22 H 0.26 14.51 8.32 -92.71 -0.77 13.73 16 23 H 0.03 1.60 7.93 -2.38 -0.02 1.58 16 24 H 0.09 5.08 5.27 -2.39 -0.01 5.07 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 27 H 0.40 7.58 9.12 -74.05 -0.68 6.90 16 28 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 29 H 0.13 2.75 8.10 -2.39 -0.02 2.73 16 30 H 0.13 2.35 8.10 -2.39 -0.02 2.33 16 31 H 0.09 2.42 7.48 -2.39 -0.02 2.41 16 32 H 0.08 3.27 8.07 -2.39 -0.02 3.25 16 33 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.09 3.53 8.14 -2.38 -0.02 3.51 16 35 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -68.41 302.82 2.65 -65.75 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.43 Total: 23.11 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.61 Total: -12.20 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.24 Total: -51.79 kcal Atomic # 8 Polarization: -65.99 SS G_CDS: -3.66 Total: -69.65 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -68.41 2.65 -65.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118398564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.928 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds